RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 HNRNPH3P31942 346 aaKnown RBP6.8□□□□□ -1.32
SYNE1-239ENST00000545694 CASP14P31944 242 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 GTF2F1P35269 517 aaKnown RBP eCLIP6.8□□□□□ -1.32
SYNE1-239ENST00000545694 KRT9P35527 623 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 PMS1P54277 932 aaKnown RBP6.8□□□□□ -1.32
SYNE1-239ENST00000545694 PSMC6P62333 389 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 CCNA1P78396 465 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 CYP4A11Q02928 519 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 RBL2Q08999 1139 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 ADAM9Q13443 819 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 SNAPC2Q13487 334 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 UBAP2LQ14157 1087 aaKnown RBP6.8□□□□□ -1.32
SYNE1-239ENST00000545694 CTTNQ14247 550 aaKnown RBP6.8□□□□□ -1.32
SYNE1-239ENST00000545694 NEDD9Q14511 834 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 GPR162Q16538 588 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 CCDC40Q4G0X9 1142 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 LDLRAD1Q5T700 205 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 PRAMEF18Q5VWM3 479 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 E4F1Q66K89 784 aaPredicted RBP6.8□□□□□ -1.32
SYNE1-239ENST00000545694 SLC30A10Q6XR72 485 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 ZNF720Q7Z2F6 126 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 TMEM139Q8IV31 216 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 FAM178BQ8IXR5 827 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 ANKRD35Q8N283 1001 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 PGBD3Q8N328 593 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 MYCT1Q8N699 235 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 MCPH1Q8NEM0 835 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 SYN2Q92777 582 aaPredicted RBP6.8□□□□□ -1.32
SYNE1-239ENST00000545694 KIFAP3Q92845 792 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 GJA10Q969M2 543 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 VTI1AQ96AJ9 217 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 SPATC1LQ9H0A9 340 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 TAF1DQ9H5J8 278 aaPredicted RBP6.8□□□□□ -1.32
SYNE1-239ENST00000545694 HOMER2Q9NSB8 354 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 ABHD10Q9NUJ1 306 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 RGL1Q9NZL6 768 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 FBXL5Q9UKA1 691 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 MYO6Q9UM54 1294 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 SCAF8Q9UPN6 1271 aaKnown RBP6.8□□□□□ -1.32
SYNE1-239ENST00000545694 SAMM50Q9Y512 469 aa6.8□□□□□ -1.32
SYNE1-239ENST00000545694 PHLPP2Q6ZVD8 1323 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 TRPM7Q96QT4 1865 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 KRBA1A5PL33 1030 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 ADM5C9JUS6 153 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 PES1O00541 588 aaKnown RBP6.79□□□□□ -1.32
SYNE1-239ENST00000545694 C2CD2LO14523 706 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 DYNC1I1O14576 645 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 CHMP2AO43633 222 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 GCNT3O95395 438 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 NR2F2P24468 414 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 EDNRBP24530 442 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 ANXA13P27216 316 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 YWHABP31946 246 aaKnown RBP6.79□□□□□ -1.32
SYNE1-239ENST00000545694 CYLC1P35663 651 aaPredicted RBP6.79□□□□□ -1.32
SYNE1-239ENST00000545694 PSMC2P35998 433 aaKnown RBP6.79□□□□□ -1.32
SYNE1-239ENST00000545694 GCLCP48506 637 aaPredicted RBP6.79□□□□□ -1.32
SYNE1-239ENST00000545694 RARRES1P49788 294 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 SMTNP53814 917 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 ADKP55263 362 aaKnown RBP6.79□□□□□ -1.32
SYNE1-239ENST00000545694 ETF1P62495 437 aaKnown RBP6.79□□□□□ -1.32
SYNE1-239ENST00000545694 HERVK_113P62684 666 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 TUBB4BP68371 445 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 UBXN2AP68543 259 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 KRT83P78385 493 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 ITGB3BPQ13352 177 aaPredicted RBP6.79□□□□□ -1.32
SYNE1-239ENST00000545694 PLS1Q14651 629 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 PPP2R5AQ15172 486 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 SYCP1Q15431 976 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 MEA1Q16626 185 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 HSP90AA4PQ58FG1 418 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 MIIPQ5JXC2 388 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 CEP135Q66GS9 1140 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 MIS18BP1Q6P0N0 1132 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 GADL1Q6ZQY3 521 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 USP37Q86T82 979 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 SFR1Q86XK3 245 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 CREBRFQ8IUR6 639 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 TRIM59Q8IWR1 403 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 C12orf56Q8IXR9 622 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 MYRIPQ8NFW9 859 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 IL31RAQ8NI17 732 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 EDARADDQ8WWZ3 215 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 ABHD17AQ96GS6 310 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 PPP1R13BQ96KQ4 1090 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 RUSC1Q9BVN2 902 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 STRA6Q9BX79 667 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 TTYH3Q9C0H2 523 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 GBP3Q9H0R5 595 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 ZHX3Q9H4I2 956 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 JPH1Q9HDC5 661 aaPredicted RBP6.79□□□□□ -1.32
SYNE1-239ENST00000545694 LUC7LQ9NQ29 371 aaKnown RBP6.79□□□□□ -1.32
SYNE1-239ENST00000545694 PLCB1Q9NQ66 1216 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 SLC9A2Q9UBY0 812 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 ARMCX3Q9UH62 379 aaPredicted RBP6.79□□□□□ -1.32
SYNE1-239ENST00000545694 EXOC7Q9UPT5 735 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 PHF24Q9UPV7 400 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 PPP2R2CQ9Y2T4 447 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 RIPK3Q9Y572 518 aa6.79□□□□□ -1.32
SYNE1-239ENST00000545694 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.79□□□□□ -1.32
SYNE1-239ENST00000545694 KAT6AQ92794 2004 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms