RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 CYP4A11Q02928 519 aa15.77■□□□□ 0.12
SNHG1-213ENST00000540725 CTTNQ14247 550 aaKnown RBP15.77■□□□□ 0.12
SNHG1-213ENST00000540725 XKR9Q5GH70 373 aa15.77■□□□□ 0.12
SNHG1-213ENST00000540725 MRPL10Q7Z7H8 261 aaKnown RBP15.77■□□□□ 0.12
SNHG1-213ENST00000540725 ZNF280BQ86YH2 543 aa15.77■□□□□ 0.12
SNHG1-213ENST00000540725 SUGP1Q8IWZ8 645 aaKnown RBP15.77■□□□□ 0.12
SNHG1-213ENST00000540725 TMEM87AQ8NBN3 555 aa15.77■□□□□ 0.12
SNHG1-213ENST00000540725 URGCPQ8TCY9 931 aa15.77■□□□□ 0.12
SNHG1-213ENST00000540725 TCP11Q8WWU5 503 aa15.77■□□□□ 0.12
SNHG1-213ENST00000540725 NECTIN4Q96NY8 510 aa15.77■□□□□ 0.12
SNHG1-213ENST00000540725 POMKQ9H5K3 350 aa15.77■□□□□ 0.12
SNHG1-213ENST00000540725 ZSWIM4Q9H7M6 989 aa15.77■□□□□ 0.12
SNHG1-213ENST00000540725 BRMS1Q9HCU9 246 aa15.77■□□□□ 0.12
SNHG1-213ENST00000540725 TSHZ2Q9NRE2 1034 aa15.77■□□□□ 0.12
SNHG1-213ENST00000540725 NR2E1Q9Y466 385 aa15.77■□□□□ 0.12
SNHG1-213ENST00000540725 CNTNAP2Q9UHC6 1331 aa15.77■□□□□ 0.11
SNHG1-213ENST00000540725 ZBTB39O15060 712 aa15.76■□□□□ 0.11
SNHG1-213ENST00000540725 ASAP2O43150 1006 aa15.76■□□□□ 0.11
SNHG1-213ENST00000540725 NEFLP07196 543 aa15.76■□□□□ 0.11
SNHG1-213ENST00000540725 FDPSP14324 419 aaKnown RBP15.76■□□□□ 0.11
SNHG1-213ENST00000540725 HOXA11P31270 313 aaPredicted RBP15.76■□□□□ 0.11
SNHG1-213ENST00000540725 MTHFRP42898 656 aa15.76■□□□□ 0.11
SNHG1-213ENST00000540725 GIT2Q14161 759 aa15.76■□□□□ 0.11
SNHG1-213ENST00000540725 UBXN11Q5T124 520 aa15.76■□□□□ 0.11
SNHG1-213ENST00000540725 RARS2Q5T160 578 aaKnown RBP15.76■□□□□ 0.11
SNHG1-213ENST00000540725 ZBTB33Q86T24 672 aa15.76■□□□□ 0.11
SNHG1-213ENST00000540725 FERMT3Q86UX7 667 aa15.76■□□□□ 0.11
SNHG1-213ENST00000540725 FBXL6Q8N531 539 aa15.76■□□□□ 0.11
SNHG1-213ENST00000540725 NECAB1Q8N987 351 aa15.76■□□□□ 0.11
SNHG1-213ENST00000540725 RNF149Q8NC42 400 aa15.76■□□□□ 0.11
SNHG1-213ENST00000540725 TNFRSF25Q93038 417 aa15.76■□□□□ 0.11
SNHG1-213ENST00000540725 MTRQ99707 1265 aa15.76■□□□□ 0.11
SNHG1-213ENST00000540725 VN1R3Q9BXE9 311 aa15.76■□□□□ 0.11
SNHG1-213ENST00000540725 RSAD1Q9HA92 442 aa15.76■□□□□ 0.11
SNHG1-213ENST00000540725 DZANK1Q9NVP4 752 aa15.76■□□□□ 0.11
SNHG1-213ENST00000540725 DDHD2O94830 711 aa15.75■□□□□ 0.11
SNHG1-213ENST00000540725 LARGE1O95461 756 aa15.75■□□□□ 0.11
SNHG1-213ENST00000540725 EPCAMP16422 314 aa15.75■□□□□ 0.11
SNHG1-213ENST00000540725 MRE11P49959 708 aa15.75■□□□□ 0.11
SNHG1-213ENST00000540725 AFF1P51825 1210 aaKnown RBP15.75■□□□□ 0.11
SNHG1-213ENST00000540725 TPH2Q8IWU9 490 aa15.75■□□□□ 0.11
SNHG1-213ENST00000540725 C12orf76Q8N812 135 aaPredicted RBP15.75■□□□□ 0.11
SNHG1-213ENST00000540725 PRSS33Q8NF86 280 aa15.75■□□□□ 0.11
SNHG1-213ENST00000540725 GTF3C6Q969F1 213 aa15.75■□□□□ 0.11
SNHG1-213ENST00000540725 ASIC4Q96FT7 647 aa15.75■□□□□ 0.11
SNHG1-213ENST00000540725 RIPOR3Q96MK2 946 aa15.75■□□□□ 0.11
SNHG1-213ENST00000540725 XPNPEP1Q9NQW7 623 aa15.75■□□□□ 0.11
SNHG1-213ENST00000540725 C2CD4DB7Z1M9 353 aa15.75■□□□□ 0.11
SNHG1-213ENST00000540725 ERLIN2O94905 339 aa15.75■□□□□ 0.11
SNHG1-213ENST00000540725 SLITRK3O94933 977 aa15.75■□□□□ 0.11
SNHG1-213ENST00000540725 WEE2P0C1S8 567 aa15.75■□□□□ 0.11
SNHG1-213ENST00000540725 NCLP19338 710 aaKnown RBP15.75■□□□□ 0.11
SNHG1-213ENST00000540725 PTPN14Q15678 1187 aa15.75■□□□□ 0.11
SNHG1-213ENST00000540725 ME3Q16798 604 aa15.75■□□□□ 0.11
SNHG1-213ENST00000540725 IER5LQ5T953 404 aa15.75■□□□□ 0.11
SNHG1-213ENST00000540725 KIAA1841Q6NSI8 718 aa15.75■□□□□ 0.11
SNHG1-213ENST00000540725 SLC22A17Q8WUG5 538 aa15.75■□□□□ 0.11
SNHG1-213ENST00000540725 FAM193BQ96PV7 902 aaPredicted RBP15.75■□□□□ 0.11
SNHG1-213ENST00000540725 EIF2AK1Q9BQI3 630 aaKnown RBP15.75■□□□□ 0.11
SNHG1-213ENST00000540725 TMEM175Q9BSA9 504 aa15.75■□□□□ 0.11
SNHG1-213ENST00000540725 KANSL3Q9P2N6 904 aa15.75■□□□□ 0.11
SNHG1-213ENST00000540725 PCDHA12Q9UN75 941 aa15.75■□□□□ 0.11
SNHG1-213ENST00000540725 PLXNA3P51805 1871 aa15.74■□□□□ 0.11
SNHG1-213ENST00000540725 TSPAN1O60635 241 aa15.74■□□□□ 0.11
SNHG1-213ENST00000540725 POMCP01189 267 aa15.74■□□□□ 0.11
SNHG1-213ENST00000540725 PTENP60484 403 aa15.74■□□□□ 0.11
SNHG1-213ENST00000540725 MXD4Q14582 209 aaPredicted RBP15.74■□□□□ 0.11
SNHG1-213ENST00000540725 CALCRLQ16602 461 aa15.74■□□□□ 0.11
SNHG1-213ENST00000540725 KANK3Q6NY19 840 aa15.74■□□□□ 0.11
SNHG1-213ENST00000540725 PPFIBP1Q86W92 1011 aa15.74■□□□□ 0.11
SNHG1-213ENST00000540725 KREMEN2Q8NCW0 462 aa15.74■□□□□ 0.11
SNHG1-213ENST00000540725 SMG8Q8ND04 991 aaKnown RBP15.74■□□□□ 0.11
SNHG1-213ENST00000540725 CNNM3Q8NE01 707 aa15.74■□□□□ 0.11
SNHG1-213ENST00000540725 NSUN7Q8NE18 718 aaKnown RBP15.74■□□□□ 0.11
SNHG1-213ENST00000540725 HSD17B14Q9BPX1 270 aa15.74■□□□□ 0.11
SNHG1-213ENST00000540725 STK39Q9UEW8 545 aa15.74■□□□□ 0.11
SNHG1-213ENST00000540725 FAN1Q9Y2M0 1017 aa15.74■□□□□ 0.11
SNHG1-213ENST00000540725 MTCL1Q9Y4B5 1905 aaKnown RBP15.74■□□□□ 0.11
SNHG1-213ENST00000540725 INO80B-WBP1J3KQ70 363 aa15.73■□□□□ 0.11
SNHG1-213ENST00000540725 NRP1O14786 923 aa15.73■□□□□ 0.11
SNHG1-213ENST00000540725 LYPLA2O95372 231 aa15.73■□□□□ 0.11
SNHG1-213ENST00000540725 ALDH2P05091 517 aa15.73■□□□□ 0.11
SNHG1-213ENST00000540725 SSBP05455 408 aaKnown RBP eCLIP15.73■□□□□ 0.11
SNHG1-213ENST00000540725 ITGA4P13612 1032 aa15.73■□□□□ 0.11
SNHG1-213ENST00000540725 AXLP30530 894 aa15.73■□□□□ 0.11
SNHG1-213ENST00000540725 FOSBP53539 338 aa15.73■□□□□ 0.11
SNHG1-213ENST00000540725 TFDP1Q14186 410 aa15.73■□□□□ 0.11
SNHG1-213ENST00000540725 PCBP1Q15365 356 aaKnown RBP eCLIP15.73■□□□□ 0.11
SNHG1-213ENST00000540725 ATAT1Q5SQI0 421 aa15.73■□□□□ 0.11
SNHG1-213ENST00000540725 CABP7Q86V35 215 aa15.73■□□□□ 0.11
SNHG1-213ENST00000540725 DIS3L2Q8IYB7 885 aaKnown RBP15.73■□□□□ 0.11
SNHG1-213ENST00000540725 CCDC51Q96ER9 411 aa15.73■□□□□ 0.11
SNHG1-213ENST00000540725 CCDC43Q96MW1 224 aaKnown RBP15.73■□□□□ 0.11
SNHG1-213ENST00000540725 PRRX2Q99811 253 aa15.73■□□□□ 0.11
SNHG1-213ENST00000540725 EIF2AQ9BY44 585 aaKnown RBP15.73■□□□□ 0.11
SNHG1-213ENST00000540725 TTC12Q9H892 705 aaPredicted RBP15.73■□□□□ 0.11
SNHG1-213ENST00000540725 UBN1Q9NPG3 1134 aa15.73■□□□□ 0.11
SNHG1-213ENST00000540725 ANKEF1Q9NU02 776 aa15.73■□□□□ 0.11
SNHG1-213ENST00000540725 SORCS3Q9UPU3 1222 aa15.73■□□□□ 0.11
SNHG1-213ENST00000540725 IPPQ9Y573 584 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms