RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 RASSF10A6NK89 507 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 MIF4GDA9UHW6 222 aaKnown RBP11.63□□□□□ -0.55
CLIP1-213ENST00000540338 TGFB1I1O43294 461 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 TMEM253P0C7T8 217 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 HSPA6P17066 643 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 TAX1BP1Q86VP1 789 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 GPD1LQ8N335 351 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 SLC35G2Q8TBE7 412 aa11.63□□□□□ -0.55
CLIP1-213ENST00000540338 ESYT3A0FGR9 886 aa11.62□□□□□ -0.55
CLIP1-213ENST00000540338 SASH3O75995 380 aa11.62□□□□□ -0.55
CLIP1-213ENST00000540338 CNGA1P29973 690 aa11.62□□□□□ -0.55
CLIP1-213ENST00000540338 GGCXP38435 758 aa11.62□□□□□ -0.55
CLIP1-213ENST00000540338 ITIH3Q06033 890 aa11.62□□□□□ -0.55
CLIP1-213ENST00000540338 CUL1Q13616 776 aa11.62□□□□□ -0.55
CLIP1-213ENST00000540338 CREG2Q8IUH2 290 aa11.62□□□□□ -0.55
CLIP1-213ENST00000540338 MAIP1Q8WWC4 291 aa11.62□□□□□ -0.55
CLIP1-213ENST00000540338 MAGOHBQ96A72 148 aaKnown RBP11.62□□□□□ -0.55
CLIP1-213ENST00000540338 C17orf75Q9HAS0 396 aa11.62□□□□□ -0.55
CLIP1-213ENST00000540338 TBX20Q9UMR3 447 aa11.62□□□□□ -0.55
CLIP1-213ENST00000540338 TRPC6Q9Y210 931 aa11.62□□□□□ -0.55
CLIP1-213ENST00000540338 LAMB1P07942 1786 aa11.62□□□□□ -0.55
CLIP1-213ENST00000540338 F8VZ95 297 aa11.62□□□□□ -0.55
CLIP1-213ENST00000540338 FANCGO15287 622 aa11.62□□□□□ -0.55
CLIP1-213ENST00000540338 NOL4O94818 638 aa11.62□□□□□ -0.55
CLIP1-213ENST00000540338 LDHAP00338 332 aaKnown RBP11.62□□□□□ -0.55
CLIP1-213ENST00000540338 BRDTQ58F21 947 aaPredicted RBP11.62□□□□□ -0.55
CLIP1-213ENST00000540338 EPM2AIP1Q7L775 607 aaPredicted RBP11.62□□□□□ -0.55
CLIP1-213ENST00000540338 CCDC25Q86WR0 208 aa11.62□□□□□ -0.55
CLIP1-213ENST00000540338 IL31RAQ8NI17 732 aa11.62□□□□□ -0.55
CLIP1-213ENST00000540338 BBXQ8WY36 941 aaPredicted RBP11.62□□□□□ -0.55
CLIP1-213ENST00000540338 MSTO1Q9BUK6 570 aa11.62□□□□□ -0.55
CLIP1-213ENST00000540338 PCDHB4Q9Y5E5 795 aa11.62□□□□□ -0.55
CLIP1-213ENST00000540338 MYO1FO00160 1098 aa11.62□□□□□ -0.55
CLIP1-213ENST00000540338 EBAG9O00559 213 aa11.62□□□□□ -0.55
CLIP1-213ENST00000540338 LCA5LO95447 670 aa11.62□□□□□ -0.55
CLIP1-213ENST00000540338 HPDP32754 393 aaPredicted RBP11.62□□□□□ -0.55
CLIP1-213ENST00000540338 R3HDM1Q15032 1099 aaKnown RBP11.62□□□□□ -0.55
CLIP1-213ENST00000540338 HGSNATQ68CP4 663 aa11.62□□□□□ -0.55
CLIP1-213ENST00000540338 MICALCLQ6ZW33 695 aa11.62□□□□□ -0.55
CLIP1-213ENST00000540338 TPCN2Q8NHX9 752 aa11.62□□□□□ -0.55
CLIP1-213ENST00000540338 TRIM11Q96F44 468 aa11.62□□□□□ -0.55
CLIP1-213ENST00000540338 PARP2Q9UGN5 583 aa11.62□□□□□ -0.55
CLIP1-213ENST00000540338 NOC2LQ9Y3T9 749 aaKnown RBP11.62□□□□□ -0.55
CLIP1-213ENST00000540338 FOXN3O00409 490 aaPredicted RBP11.61□□□□□ -0.55
CLIP1-213ENST00000540338 PRKCEQ02156 737 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 NEDD9Q14511 834 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 MEI1Q5TIA1 1274 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 DPY19L2Q6NUT2 758 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 GSTA5Q7RTV2 222 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 CCDC114Q96M63 670 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 GOLPH3Q9H4A6 298 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 FBXL5Q9UKA1 691 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 PFASO15067 1338 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 EDIL3O43854 480 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 TLR2O60603 784 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 STAM2O75886 525 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 PRKCIP41743 596 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 CYFIP1Q7L576 1253 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 METTL13Q8N6R0 699 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 PDGFDQ9GZP0 370 aaPredicted RBP11.61□□□□□ -0.55
CLIP1-213ENST00000540338 DDX47Q9H0S4 455 aaKnown RBP11.61□□□□□ -0.55
CLIP1-213ENST00000540338 USTQ9Y2C2 406 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 KIAA1551Q9HCM1 1747 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 PDE2AO00408 941 aaPredicted RBP11.61□□□□□ -0.55
CLIP1-213ENST00000540338 OPLAHO14841 1288 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 CYP26A1O43174 497 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 MAPK4P31152 587 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 DSG3P32926 999 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 ACTN2P35609 894 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 NPTX2P47972 431 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 POTEAQ6S8J7 498 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 ENOSF1Q7L5Y1 443 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 EXOC8Q8IYI6 725 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 USP38Q8NB14 1042 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 P2RX7Q99572 595 aaKnown RBP11.61□□□□□ -0.55
CLIP1-213ENST00000540338 JPH2Q9BR39 696 aaPredicted RBP11.61□□□□□ -0.55
CLIP1-213ENST00000540338 SUCLA2Q9P2R7 463 aaPredicted RBP11.61□□□□□ -0.55
CLIP1-213ENST00000540338 FEZ2Q9UHY8 353 aaPredicted RBP11.61□□□□□ -0.55
CLIP1-213ENST00000540338 C10orf71Q711Q0 1435 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 DYDC1Q8WWB3 177 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 PURBQ96QR8 312 aaKnown RBP11.61□□□□□ -0.55
CLIP1-213ENST00000540338 KIFC3Q9BVG8 833 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 DMGDHQ9UI17 866 aaKnown RBP11.61□□□□□ -0.55
CLIP1-213ENST00000540338 HPCAL4Q9UM19 191 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 IVNS1ABPQ9Y6Y0 642 aa11.61□□□□□ -0.55
CLIP1-213ENST00000540338 RTN2O75298 545 aa11.6□□□□□ -0.55
CLIP1-213ENST00000540338 ACTR2P61160 394 aa11.6□□□□□ -0.55
CLIP1-213ENST00000540338 KRT71Q3SY84 523 aa11.6□□□□□ -0.55
CLIP1-213ENST00000540338 DCUN1D2Q6PH85 259 aa11.6□□□□□ -0.55
CLIP1-213ENST00000540338 CHST13Q8NET6 341 aa11.6□□□□□ -0.55
CLIP1-213ENST00000540338 CAPS2Q9BXY5 557 aa11.6□□□□□ -0.55
CLIP1-213ENST00000540338 STMN4Q9H169 189 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-213ENST00000540338 ASIC3Q9UHC3 531 aa11.6□□□□□ -0.55
CLIP1-213ENST00000540338 RBAK-RBAKDNI3L0D1 243 aa11.6□□□□□ -0.55
CLIP1-213ENST00000540338 OSBPP22059 807 aa11.6□□□□□ -0.55
CLIP1-213ENST00000540338 OAZ1P54368 228 aa11.6□□□□□ -0.55
CLIP1-213ENST00000540338 KCTD16Q68DU8 428 aa11.6□□□□□ -0.55
CLIP1-213ENST00000540338 IRF2BP2Q7Z5L9 587 aa11.6□□□□□ -0.55
CLIP1-213ENST00000540338 SLC9A9Q8IVB4 645 aa11.6□□□□□ -0.55
CLIP1-213ENST00000540338 TMEM8AQ9HCN3 771 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms