RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 ZNF410Q86VK4 478 aa11.89□□□□□ -0.51
COL6A3-214ENST00000493608 NOSTRINQ8IVI9 506 aa11.89□□□□□ -0.51
COL6A3-214ENST00000493608 HELQQ8TDG4 1101 aa11.89□□□□□ -0.51
COL6A3-214ENST00000493608 POF1BQ8WVV4 589 aa11.89□□□□□ -0.51
COL6A3-214ENST00000493608 PSPC1Q8WXF1 523 aaKnown RBP11.89□□□□□ -0.51
COL6A3-214ENST00000493608 LPPQ93052 612 aa11.89□□□□□ -0.51
COL6A3-214ENST00000493608 P2RX5Q93086 422 aa11.89□□□□□ -0.51
COL6A3-214ENST00000493608 CASD1Q96PB1 797 aa11.89□□□□□ -0.51
COL6A3-214ENST00000493608 JPH2Q9BR39 696 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-214ENST00000493608 PRKD2Q9BZL6 878 aa11.89□□□□□ -0.51
COL6A3-214ENST00000493608 CWH43Q9H720 699 aa11.89□□□□□ -0.51
COL6A3-214ENST00000493608 ELAC1Q9H777 363 aaKnown RBP11.89□□□□□ -0.51
COL6A3-214ENST00000493608 MINDY3Q9H8M7 445 aa11.89□□□□□ -0.51
COL6A3-214ENST00000493608 IFT122Q9HBG6 1241 aa11.89□□□□□ -0.51
COL6A3-214ENST00000493608 PIN4Q9Y237 131 aaKnown RBP11.89□□□□□ -0.51
COL6A3-214ENST00000493608 PCDHGC5Q9Y5F6 944 aa11.89□□□□□ -0.51
COL6A3-214ENST00000493608 A0A0U1RQF3 1178 aa11.88□□□□□ -0.51
COL6A3-214ENST00000493608 TNFRSF10AO00220 468 aa11.88□□□□□ -0.51
COL6A3-214ENST00000493608 MED24O75448 989 aa11.88□□□□□ -0.51
COL6A3-214ENST00000493608 SPATA31C1P0DKV0 1188 aa11.88□□□□□ -0.51
COL6A3-214ENST00000493608 ATF7P17544 494 aaPredicted RBP11.88□□□□□ -0.51
COL6A3-214ENST00000493608 SFPQP23246 707 aaKnown RBP eCLIP11.88□□□□□ -0.51
COL6A3-214ENST00000493608 RFC5P40937 340 aa11.88□□□□□ -0.51
COL6A3-214ENST00000493608 HYAL1Q12794 435 aa11.88□□□□□ -0.51
COL6A3-214ENST00000493608 CLLU1OSQ5K130 101 aa11.88□□□□□ -0.51
COL6A3-214ENST00000493608 TWF2Q6IBS0 349 aaKnown RBP11.88□□□□□ -0.51
COL6A3-214ENST00000493608 MAEAQ7L5Y9 396 aa11.88□□□□□ -0.51
COL6A3-214ENST00000493608 ADGRD2Q7Z7M1 963 aa11.88□□□□□ -0.51
COL6A3-214ENST00000493608 FERMT3Q86UX7 667 aa11.88□□□□□ -0.51
COL6A3-214ENST00000493608 EXOC8Q8IYI6 725 aa11.88□□□□□ -0.51
COL6A3-214ENST00000493608 COLGALT1Q8NBJ5 622 aa11.88□□□□□ -0.51
COL6A3-214ENST00000493608 RNF149Q8NC42 400 aa11.88□□□□□ -0.51
COL6A3-214ENST00000493608 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.88□□□□□ -0.51
COL6A3-214ENST00000493608 TMX3Q96JJ7 454 aa11.88□□□□□ -0.51
COL6A3-214ENST00000493608 INO80BQ9C086 356 aaPredicted RBP11.88□□□□□ -0.51
COL6A3-214ENST00000493608 TMEM117Q9H0C3 514 aa11.88□□□□□ -0.51
COL6A3-214ENST00000493608 LMAN2LQ9H0V9 348 aa11.88□□□□□ -0.51
COL6A3-214ENST00000493608 UPF2Q9HAU5 1272 aaKnown RBP11.88□□□□□ -0.51
COL6A3-214ENST00000493608 XPNPEP1Q9NQW7 623 aa11.88□□□□□ -0.51
COL6A3-214ENST00000493608 CLDND1Q9NY35 253 aa11.88□□□□□ -0.51
COL6A3-214ENST00000493608 PCDHB12Q9Y5F1 795 aa11.88□□□□□ -0.51
COL6A3-214ENST00000493608 MEIS3P2A8K0S8 358 aa11.87□□□□□ -0.51
COL6A3-214ENST00000493608 LINC01565O15544 149 aa11.87□□□□□ -0.51
COL6A3-214ENST00000493608 FGF18O76093 207 aa11.87□□□□□ -0.51
COL6A3-214ENST00000493608 LYPLA2O95372 231 aa11.87□□□□□ -0.51
COL6A3-214ENST00000493608 OR52Z1P0C646 297 aa11.87□□□□□ -0.51
COL6A3-214ENST00000493608 PHKA2P46019 1235 aa11.87□□□□□ -0.51
COL6A3-214ENST00000493608 RARRES1P49788 294 aa11.87□□□□□ -0.51
COL6A3-214ENST00000493608 TOB1P50616 345 aaPredicted RBP11.87□□□□□ -0.51
COL6A3-214ENST00000493608 DLX2Q07687 328 aaPredicted RBP11.87□□□□□ -0.51
COL6A3-214ENST00000493608 CLUL1Q15846 466 aa11.87□□□□□ -0.51
COL6A3-214ENST00000493608 NAALADL2Q58DX5 795 aa11.87□□□□□ -0.51
COL6A3-214ENST00000493608 MCTP1Q6DN14 999 aa11.87□□□□□ -0.51
COL6A3-214ENST00000493608 FAM43BQ6ZT52 329 aaPredicted RBP11.87□□□□□ -0.51
COL6A3-214ENST00000493608 RBM23Q86U06 439 aaKnown RBP11.87□□□□□ -0.51
COL6A3-214ENST00000493608 ZNF598Q86UK7 904 aaKnown RBP11.87□□□□□ -0.51
COL6A3-214ENST00000493608 CATSPER3Q86XQ3 398 aa11.87□□□□□ -0.51
COL6A3-214ENST00000493608 THNSL1Q8IYQ7 743 aa11.87□□□□□ -0.51
COL6A3-214ENST00000493608 ABI1Q8IZP0 508 aa11.87□□□□□ -0.51
COL6A3-214ENST00000493608 C4orf32Q8N8J7 132 aa11.87□□□□□ -0.51
COL6A3-214ENST00000493608 ASAP3Q8TDY4 903 aa11.87□□□□□ -0.51
COL6A3-214ENST00000493608 MICAL1Q8TDZ2 1067 aa11.87□□□□□ -0.51
COL6A3-214ENST00000493608 TCP11Q8WWU5 503 aa11.87□□□□□ -0.51
COL6A3-214ENST00000493608 CCDC43Q96MW1 224 aaKnown RBP11.87□□□□□ -0.51
COL6A3-214ENST00000493608 CHST12Q9NRB3 414 aa11.87□□□□□ -0.51
COL6A3-214ENST00000493608 AAASQ9NRG9 546 aa11.87□□□□□ -0.51
COL6A3-214ENST00000493608 ANKEF1Q9NU02 776 aa11.87□□□□□ -0.51
COL6A3-214ENST00000493608 DACT1Q9NYF0 836 aa11.87□□□□□ -0.51
COL6A3-214ENST00000493608 PPME1Q9Y570 386 aa11.87□□□□□ -0.51
COL6A3-214ENST00000493608 PCDHB6Q9Y5E3 794 aa11.87□□□□□ -0.51
COL6A3-214ENST00000493608 NT5C1B-RDH14C9J2C7 533 aa11.86□□□□□ -0.51
COL6A3-214ENST00000493608 ASAP2O43150 1006 aa11.86□□□□□ -0.51
COL6A3-214ENST00000493608 HOXA2O43364 376 aa11.86□□□□□ -0.51
COL6A3-214ENST00000493608 USO1O60763 962 aaKnown RBP11.86□□□□□ -0.51
COL6A3-214ENST00000493608 EOMESO95936 686 aa11.86□□□□□ -0.51
COL6A3-214ENST00000493608 U2AF2P26368 475 aaKnown RBP eCLIP11.86□□□□□ -0.51
COL6A3-214ENST00000493608 GJB2P29033 226 aa11.86□□□□□ -0.51
COL6A3-214ENST00000493608 LTBRP36941 435 aa11.86□□□□□ -0.51
COL6A3-214ENST00000493608 ERVFC1P60507 584 aa11.86□□□□□ -0.51
COL6A3-214ENST00000493608 LEXMQ3ZCV2 418 aa11.86□□□□□ -0.51
COL6A3-214ENST00000493608 PTCRAQ6ISU1 281 aaPredicted RBP11.86□□□□□ -0.51
COL6A3-214ENST00000493608 SRGAP1Q7Z6B7 1085 aa11.86□□□□□ -0.51
COL6A3-214ENST00000493608 NEK9Q8TD19 979 aa11.86□□□□□ -0.51
COL6A3-214ENST00000493608 PABPC5Q96DU9 382 aaKnown RBP11.86□□□□□ -0.51
COL6A3-214ENST00000493608 TBC1D32Q96NH3 1257 aa11.86□□□□□ -0.51
COL6A3-214ENST00000493608 TMUB1Q9BVT8 246 aa11.86□□□□□ -0.51
COL6A3-214ENST00000493608 POLD4Q9HCU8 107 aa11.86□□□□□ -0.51
COL6A3-214ENST00000493608 GPRC5CQ9NQ84 441 aa11.86□□□□□ -0.51
COL6A3-214ENST00000493608 FAM105AQ9NUU6 356 aa11.86□□□□□ -0.51
COL6A3-214ENST00000493608 NOL7Q9UMY1 257 aaKnown RBP11.86□□□□□ -0.51
COL6A3-214ENST00000493608 INPP5FQ9Y2H2 1132 aa11.86□□□□□ -0.51
COL6A3-214ENST00000493608 PER2O15055 1255 aa11.85□□□□□ -0.51
COL6A3-214ENST00000493608 GAS2O43903 313 aaKnown RBP11.85□□□□□ -0.51
COL6A3-214ENST00000493608 DGAT1O75907 488 aa11.85□□□□□ -0.51
COL6A3-214ENST00000493608 IL9P15248 144 aa11.85□□□□□ -0.51
COL6A3-214ENST00000493608 LAG3P18627 525 aa11.85□□□□□ -0.51
COL6A3-214ENST00000493608 HOXA11P31270 313 aaPredicted RBP11.85□□□□□ -0.51
COL6A3-214ENST00000493608 ARL2P36404 184 aa11.85□□□□□ -0.51
COL6A3-214ENST00000493608 NRIP1P48552 1158 aa11.85□□□□□ -0.51
COL6A3-214ENST00000493608 ECM1Q16610 540 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms