RNA–Protein interactions for RNA: ENST00000492606.1

UBR4-215, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 3

Gene UBR4, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-215	ENST00000492606	GRIN3A	Q8TCU5	1115 aa		4.99	□□□□□ -1.61
UBR4-215	ENST00000492606	SEC16B	Q96JE7	1060 aa		4.99	□□□□□ -1.61
UBR4-215	ENST00000492606	FAM126A	Q9BYI3	521 aa	Predicted RBP	4.99	□□□□□ -1.61
UBR4-215	ENST00000492606	CEP44	Q9C0F1	390 aa		4.99	□□□□□ -1.61
UBR4-215	ENST00000492606	NRSN2	Q9GZP1	204 aa		4.99	□□□□□ -1.61
UBR4-215	ENST00000492606	SPATC1L	Q9H0A9	340 aa		4.99	□□□□□ -1.61
UBR4-215	ENST00000492606	DDX4	Q9NQI0	724 aa	Known RBP	4.99	□□□□□ -1.61
UBR4-215	ENST00000492606	ARHGEF3	Q9NR81	526 aa		4.99	□□□□□ -1.61
UBR4-215	ENST00000492606	FLNA	P21333	2647 aa	Known RBP	4.99	□□□□□ -1.61
UBR4-215	ENST00000492606	NBAS	A2RRP1	2371 aa		4.99	□□□□□ -1.61
UBR4-215	ENST00000492606	APC	P25054	2843 aa		4.99	□□□□□ -1.61
UBR4-215	ENST00000492606	SCN10A	Q9Y5Y9	1956 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	ELOA3C	A0A087WX78	387 aa	Predicted RBP	4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	ELOA3D	A6NLF2	546 aa	Predicted RBP	4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	ENTPD3	O75355	529 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	EOMES	O95936	686 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	F13A1	P00488	732 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	AMH	P03971	560 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	RLBP1	P12271	317 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	IGHMBP2	P38935	993 aa	Known RBP	4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	STARD6	P59095	220 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	BFSP2	Q13515	415 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	ACVR2B	Q13705	512 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	GNL2	Q13823	731 aa	Known RBP	4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	PCSK7	Q16549	785 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	FSCN1	Q16658	493 aa	Known RBP	4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	LRRFIP1	Q32MZ4	808 aa	Known RBP	4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	ELOA3B	Q3SY89	546 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	TAF1B	Q53T94	588 aa	Predicted RBP	4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	LLGL2	Q6P1M3	1020 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	DCLRE1A	Q6PJP8	1040 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	CCNI2	Q6ZMN8	369 aa	Predicted RBP	4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	ZC3H18	Q86VM9	953 aa	Known RBP	4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	SLITRK4	Q8IW52	837 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	TRIM42	Q8IWZ5	723 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	NPAS3	Q8IXF0	933 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	SRRM1	Q8IYB3	904 aa	Known RBP	4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	GOLM1	Q8NBJ4	401 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	ELOA3	Q8NG57	546 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	POF1B	Q8WVV4	589 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	TOP1MT	Q969P6	601 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	GAL3ST3	Q96A11	431 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	NECTIN4	Q96NY8	510 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	CTAGE1	Q96RT6	745 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	MYD88	Q99836	296 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	LRRC3	Q9BY71	257 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	ADAM7	Q9H2U9	754 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	PIF1	Q9H611	641 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	DIS3	Q9Y2L1	958 aa	Known RBP	4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	BSN	Q9UPA5	3926 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	CCDC168	Q8NDH2	2452 aa		4.98	□□□□□ -1.61
UBR4-215	ENST00000492606	MYH13	Q9UKX3	1938 aa		4.97	□□□□□ -1.61
UBR4-215	ENST00000492606	PTPRB	P23467	1997 aa		4.97	□□□□□ -1.61
UBR4-215	ENST00000492606	TEX51	A0A1B0GUA7	166 aa		4.97	□□□□□ -1.61
UBR4-215	ENST00000492606	SMNDC1	O75940	238 aa	Known RBP eCLIP	4.97	□□□□□ -1.61
UBR4-215	ENST00000492606	ALB	P02768	609 aa		4.97	□□□□□ -1.61
UBR4-215	ENST00000492606	FCER1A	P12319	257 aa		4.97	□□□□□ -1.61
UBR4-215	ENST00000492606	HSP90B1	P14625	803 aa	Known RBP	4.97	□□□□□ -1.61
UBR4-215	ENST00000492606	NME2	P22392	152 aa		4.97	□□□□□ -1.61
UBR4-215	ENST00000492606	ETFB	P38117	255 aa		4.97	□□□□□ -1.61
UBR4-215	ENST00000492606	NASP	P49321	788 aa	Predicted RBP	4.97	□□□□□ -1.61
UBR4-215	ENST00000492606	SIM1	P81133	766 aa	Predicted RBP	4.97	□□□□□ -1.61
UBR4-215	ENST00000492606	ADCY1	Q08828	1119 aa		4.97	□□□□□ -1.61
UBR4-215	ENST00000492606	TICAM1	Q8IUC6	712 aa		4.97	□□□□□ -1.61
UBR4-215	ENST00000492606	AFAP1L1	Q8TED9	768 aa		4.97	□□□□□ -1.61
UBR4-215	ENST00000492606	ACD	Q96AP0	544 aa		4.97	□□□□□ -1.61
UBR4-215	ENST00000492606	EDEM2	Q9BV94	578 aa		4.97	□□□□□ -1.61
UBR4-215	ENST00000492606	LACRT	Q9GZZ8	138 aa		4.97	□□□□□ -1.61
UBR4-215	ENST00000492606	DKK4	Q9UBT3	224 aa		4.97	□□□□□ -1.61
UBR4-215	ENST00000492606	EFR3B	Q9Y2G0	817 aa		4.97	□□□□□ -1.61
UBR4-215	ENST00000492606	SUPT16H	Q9Y5B9	1047 aa	Known RBP	4.97	□□□□□ -1.61
UBR4-215	ENST00000492606	RTTN	Q86VV8	2226 aa		4.97	□□□□□ -1.61
UBR4-215	ENST00000492606	SALL3	Q9BXA9	1300 aa		4.97	□□□□□ -1.61
UBR4-215	ENST00000492606	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	CILP	O75339	1184 aa		4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	ECEL1	O95672	775 aa		4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	CTSB	P07858	339 aa		4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	MMP3	P08254	477 aa		4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	EPX	P11678	715 aa		4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	HOXB8	P17481	243 aa	Predicted RBP	4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	HIBADH	P31937	336 aa	Known RBP	4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	MTHFR	P42898	656 aa		4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	MAP2K3	P46734	347 aa		4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	AFF1	P51825	1210 aa	Known RBP	4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	FAM193A	P78312	1265 aa		4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	CYP4F3	Q08477	520 aa		4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	MTAP	Q13126	283 aa		4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	ZYX	Q15942	572 aa	Known RBP	4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	FAM47C	Q5HY64	1035 aa		4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	DAB2IP	Q5VWQ8	1189 aa		4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	ELMSAN1	Q6PJG2	1045 aa		4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	SLCO4C1	Q6ZQN7	724 aa		4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	C8orf86	Q6ZUL3	223 aa		4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	LRRC8D	Q7L1W4	858 aa		4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	GPR155	Q7Z3F1	870 aa		4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	FAM177A1	Q8N128	213 aa	Predicted RBP	4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	SLC44A3	Q8N4M1	653 aa		4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	C12orf76	Q8N812	135 aa	Predicted RBP	4.96	□□□□□ -1.62
UBR4-215	ENST00000492606	KLHL23	Q8NBE8	558 aa		4.96	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms