RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 SPAG7O75391 227 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 HAUS5O94927 633 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 OAS1P00973 400 aaKnown RBP6.68□□□□□ -1.34
VPS13D-209ENST00000487188 GH1P01241 217 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 IMPDH2P12268 514 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 TMED1Q13445 227 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 PLS1Q14651 629 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 SESTD1Q86VW0 696 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 GPBP1Q86WP2 473 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 GLYCTKQ8IVS8 523 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 UBE2OQ9C0C9 1292 aaKnown RBP6.68□□□□□ -1.34
VPS13D-209ENST00000487188 MIS12Q9H081 205 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 ZWILCHQ9H900 591 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 ZDHHC18Q9NUE0 388 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 PCMTD2Q9NV79 361 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 GALNT8Q9NY28 637 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 NR2E1Q9Y466 385 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 CHD4Q14839 1912 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 FLT1P17948 1338 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 TXNDC9O14530 226 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 CYP27B1O15528 508 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 CSF1RP07333 972 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 TSPY3P0CV98 308 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 TSPY8P0CW00 308 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 CREB1P16220 341 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 HOXA7P31268 230 aaPredicted RBP6.68□□□□□ -1.34
VPS13D-209ENST00000487188 TFAP4Q01664 338 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 MCL1Q07820 350 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 CCDC15Q0P6D6 951 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 MESDQ14696 234 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 CYP4F22Q6NT55 531 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 CCNJLQ8IV13 435 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 GLIS3Q8NEA6 775 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 HAUS1Q96CS2 278 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 ZNF333Q96JL9 665 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 CYTH2Q99418 400 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 ERVK-5Q9HDB9 667 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 DNAAF2Q9NVR5 837 aaKnown RBP6.68□□□□□ -1.34
VPS13D-209ENST00000487188 PHTF1Q9UMS5 762 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 A0A0A6YYK5 440 aaPredicted RBP6.68□□□□□ -1.34
VPS13D-209ENST00000487188 MAP3K13O43283 966 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 TJP3O95049 919 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 GAS8O95995 478 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 GOLGA8HP0CJ92 632 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 ATF2P15336 505 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 CA4P22748 312 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 ANXA13P27216 316 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 PTPN4P29074 926 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 GRB10Q13322 594 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 TRIP13Q15645 432 aaPredicted RBP6.68□□□□□ -1.34
VPS13D-209ENST00000487188 ARHGAP44Q17R89 818 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 COBLL1Q53SF7 1204 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 ZFYVE27Q5T4F4 411 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 OLFML2BQ68BL8 750 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 RFX8Q6ZV50 586 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 TRIM59Q8IWR1 403 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 ZNF444Q8N0Y2 327 aaPredicted RBP6.68□□□□□ -1.34
VPS13D-209ENST00000487188 SMC6Q96SB8 1091 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 GANQ9H2C0 597 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 DENND2DQ9H6A0 471 aaPredicted RBP6.68□□□□□ -1.34
VPS13D-209ENST00000487188 EMILIN3Q9NT22 766 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 TYW1Q9NV66 732 aaKnown RBP6.68□□□□□ -1.34
VPS13D-209ENST00000487188 MCM9Q9NXL9 1143 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 DCTN4Q9UJW0 460 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 PPP1R9AQ9ULJ8 1098 aa6.68□□□□□ -1.34
VPS13D-209ENST00000487188 CFAP69A5D8W1 941 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 FAM47DPA6NHR8 397 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 MIF4GDA9UHW6 222 aaKnown RBP6.67□□□□□ -1.34
VPS13D-209ENST00000487188 POC1B-GALNT4F8VUJ3 575 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 CALUO43852 315 aaPredicted RBP6.67□□□□□ -1.34
VPS13D-209ENST00000487188 HNRNPCL1O60812 293 aaKnown RBP6.67□□□□□ -1.34
VPS13D-209ENST00000487188 ATP6V1G1O75348 118 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 KRT36O76013 467 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 ZWINTO95229 277 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 STARD3NLO95772 234 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 HNRNPCP07910 306 aaKnown RBP eCLIP6.67□□□□□ -1.34
VPS13D-209ENST00000487188 ETS2P15036 469 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 RPL13P26373 211 aaKnown RBP6.67□□□□□ -1.34
VPS13D-209ENST00000487188 SERPINB3P29508 390 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 KCNJ1P48048 391 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 ERFP50548 548 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 NPEPPSP55786 919 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 SLC34A1Q06495 639 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 CHRNA2Q15822 529 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 KYNUQ16719 465 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 TAF1BQ53T94 588 aaPredicted RBP6.67□□□□□ -1.34
VPS13D-209ENST00000487188 MFSD5Q6N075 450 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 ZDHHC24Q6UX98 284 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 CCDC125Q86Z20 511 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 RBM12BQ8IXT5 1001 aaKnown RBP6.67□□□□□ -1.34
VPS13D-209ENST00000487188 LRRC15Q8TF66 581 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 HES6Q96HZ4 224 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 UIMC1Q96RL1 719 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 DDX50Q9BQ39 737 aaKnown RBP6.67□□□□□ -1.34
VPS13D-209ENST00000487188 TMEM109Q9BVC6 243 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 PLA2G12BQ9BX93 195 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.67□□□□□ -1.342e-7■□□□□ 9.4
VPS13D-209ENST00000487188 ANAPC4Q9UJX5 808 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 PCDHB13Q9Y5F0 798 aa6.67□□□□□ -1.34
VPS13D-209ENST00000487188 RPS6KL1Q9Y6S9 549 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms