RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-208ENST00000481484 BRMS1Q9HCU9 246 aa4.67□□□□□ -1.66
VPS13D-208ENST00000481484 ERVK-5Q9HDB9 667 aa4.67□□□□□ -1.66
VPS13D-208ENST00000481484 TMEM161AQ9NX61 479 aa4.67□□□□□ -1.66
VPS13D-208ENST00000481484 DACT1Q9NYF0 836 aa4.67□□□□□ -1.66
VPS13D-208ENST00000481484 BRPF3Q9ULD4 1205 aa4.67□□□□□ -1.66
VPS13D-208ENST00000481484 PADI3Q9ULW8 664 aa4.67□□□□□ -1.66
VPS13D-208ENST00000481484 PCDHB12Q9Y5F1 795 aa4.67□□□□□ -1.66
VPS13D-208ENST00000481484 PCDHB11Q9Y5F2 797 aa4.67□□□□□ -1.66
VPS13D-208ENST00000481484 MAFBQ9Y5Q3 323 aaPredicted RBP4.67□□□□□ -1.66
VPS13D-208ENST00000481484 SNX14Q9Y5W7 946 aa4.67□□□□□ -1.66
VPS13D-208ENST00000481484 CYP46A1Q9Y6A2 500 aa4.67□□□□□ -1.66
VPS13D-208ENST00000481484 MTCL1Q9Y4B5 1905 aaKnown RBP4.67□□□□□ -1.66
VPS13D-208ENST00000481484 MYH11P35749 1972 aa4.67□□□□□ -1.66
VPS13D-208ENST00000481484 CITO14578 2027 aa4.67□□□□□ -1.66
VPS13D-208ENST00000481484 hCG_1642624A0A1W2PR95 340 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 PRR33A8MZF0 331 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 FAM86B1E9PN63 330 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 RFXAPO00287 272 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 TBX3O15119 743 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 DHX15O43143 795 aaKnown RBP4.66□□□□□ -1.66
VPS13D-208ENST00000481484 DCXO43602 365 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 CCNE2O96020 404 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 FAM86B2P0C5J1 330 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 ARP10275 920 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 ATF7P17544 494 aaPredicted RBP4.66□□□□□ -1.66
VPS13D-208ENST00000481484 KLRC1P26715 233 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 CDC27P30260 824 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 DNM2P50570 870 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 SSRP1Q08945 709 aaKnown RBP4.66□□□□□ -1.66
VPS13D-208ENST00000481484 TBC1D8BQ0IIM8 1120 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 APOBRQ0VD83 1088 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 COASYQ13057 564 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 CLN3Q13286 438 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 NONOQ15233 471 aaKnown RBP eCLIP4.66□□□□□ -1.66
VPS13D-208ENST00000481484 SMAD2Q15796 467 aaKnown RBP4.66□□□□□ -1.66
VPS13D-208ENST00000481484 ADCK5Q3MIX3 580 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 Q4G0T1 1027 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 PRR16Q569H4 304 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 LRCH2Q5VUJ6 765 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 JAKMIP3Q5VZ66 844 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 ERICH6BQ5W0A0 696 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 KRT40Q6A162 431 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 RUFY3Q7L099 469 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 LYSMD3Q7Z3D4 306 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 SPRED2Q7Z698 418 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 TMCO2Q7Z6W1 182 aaPredicted RBP4.66□□□□□ -1.66
VPS13D-208ENST00000481484 RAB11FIP4Q86YS3 637 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 ABI1Q8IZP0 508 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 GJD3Q8N144 294 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 LINC01465Q8N7H1 131 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 EFHBQ8N7U6 833 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 ZSCAN1Q8NBB4 408 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 SMRP1Q8NCR6 262 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 RASGRP4Q8TDF6 673 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 SLC5A5Q92911 643 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 LENG9Q96B70 501 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 FAM122AQ96E09 287 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 CCDC51Q96ER9 411 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 ZNF274Q96GC6 653 aaPredicted RBP4.66□□□□□ -1.66
VPS13D-208ENST00000481484 PGBD1Q96JS3 809 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 TCEANC2Q96MN5 208 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 SCLT1Q96NL6 688 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 PRRX2Q99811 253 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 TRAIPQ9BWF2 469 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 SLC26A6Q9BXS9 759 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 INO80BQ9C086 356 aaPredicted RBP4.66□□□□□ -1.66
VPS13D-208ENST00000481484 GRIP2Q9C0E4 1043 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 TMEM117Q9H0C3 514 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 BCAS3Q9H6U6 928 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 AGO3Q9H9G7 860 aaKnown RBP4.66□□□□□ -1.66
VPS13D-208ENST00000481484 ATP6V0A4Q9HBG4 840 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 TLR9Q9NR96 1032 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 DISC1Q9NRI5 854 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 RGS18Q9NS28 235 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 CLDND1Q9NY35 253 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 CD207Q9UJ71 328 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 PCDHA4Q9UN74 947 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 AKT3Q9Y243 479 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 SAMM50Q9Y512 469 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 MRPL42Q9Y6G3 142 aaKnown RBP4.66□□□□□ -1.66
VPS13D-208ENST00000481484 VPS13AQ96RL7 3174 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 DOCK8Q8NF50 2099 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 CACNA1AO00555 2505 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 ZNF292O60281 2723 aa4.66□□□□□ -1.66
VPS13D-208ENST00000481484 C2orf16Q68DN1 1984 aa4.65□□□□□ -1.66
VPS13D-208ENST00000481484 PDCD11Q14690 1871 aaKnown RBP4.65□□□□□ -1.66
VPS13D-208ENST00000481484 PTPRZ1P23471 2315 aaPredicted RBP4.65□□□□□ -1.66
VPS13D-208ENST00000481484 CYP3A7-CYP3A51PA0A087WV96 503 aa4.65□□□□□ -1.67
VPS13D-208ENST00000481484 CCDC194A0A1B0GVG4 234 aa4.65□□□□□ -1.67
VPS13D-208ENST00000481484 ZBTB42B2RXF5 422 aa4.65□□□□□ -1.67
VPS13D-208ENST00000481484 C9IYK1 514 aa4.65□□□□□ -1.67
VPS13D-208ENST00000481484 PI4K2BG5E9Z4 385 aa4.65□□□□□ -1.67
VPS13D-208ENST00000481484 DDX39AO00148 427 aaKnown RBP4.65□□□□□ -1.67
VPS13D-208ENST00000481484 ENPP3O14638 875 aa4.65□□□□□ -1.67
VPS13D-208ENST00000481484 MSH4O15457 936 aa4.65□□□□□ -1.67
VPS13D-208ENST00000481484 TBX10O75333 385 aa4.65□□□□□ -1.67
VPS13D-208ENST00000481484 EYA4O95677 639 aa4.65□□□□□ -1.67
VPS13D-208ENST00000481484 EOMESO95936 686 aa4.65□□□□□ -1.67
VPS13D-208ENST00000481484 ITGB1P05556 798 aa4.65□□□□□ -1.67
VPS13D-208ENST00000481484 DARSP14868 501 aaKnown RBP4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms