RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 GCOM1H8Y6P7 765 aaPredicted RBP7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 SH2B2O14492 632 aaPredicted RBP7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 B4GALT4O60513 344 aa7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 CDC45O75419 566 aa7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 ARIH2O95376 493 aa7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 GH1P01241 217 aa7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 SUPT20HL2P0C7V6 817 aa7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 POLR2MP0CAP2 368 aa7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 SMARCA1P28370 1054 aa7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 HOXA13P31271 388 aaPredicted RBP7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 LIFRP42702 1097 aa7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 GNAQP50148 359 aa7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 EPHB4P54760 987 aa7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 SMAD3P84022 425 aaKnown RBP7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 LY6KQ17RY6 165 aa7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 SLC35G1Q2M3R5 365 aa7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 NFRKBQ6P4R8 1299 aa7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 CCDC62Q6P9F0 684 aa7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 BCL7CQ8WUZ0 217 aaPredicted RBP7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 RRP36Q96EU6 259 aaKnown RBP7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 CCDC136Q96JN2 1154 aa7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 LZTS2Q9BRK4 669 aa7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 PDCD2LQ9BRP1 358 aa7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 MYL10Q9BUA6 226 aa7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 SPZ1Q9BXG8 430 aa7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 TRPV6Q9H1D0 765 aa7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 ALDH8A1Q9H2A2 487 aaPredicted RBP7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 MTMR10Q9NXD2 777 aa7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 SEC63Q9UGP8 760 aaKnown RBP7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 SCN5AQ14524 2016 aa7.84□□□□□ -1.15
CCDC88A-213ENST00000476903 KAT6AQ92794 2004 aa7.83□□□□□ -1.16
CCDC88A-213ENST00000476903 MMP3P08254 477 aa7.83□□□□□ -1.16
CCDC88A-213ENST00000476903 MYCLP12524 364 aaPredicted RBP7.83□□□□□ -1.16
CCDC88A-213ENST00000476903 CSF2RAP15509 400 aa7.83□□□□□ -1.16
CCDC88A-213ENST00000476903 CCND2P30279 289 aa7.83□□□□□ -1.16
CCDC88A-213ENST00000476903 CYP2C18P33260 490 aa7.83□□□□□ -1.16
CCDC88A-213ENST00000476903 ARHGAP1Q07960 439 aa7.83□□□□□ -1.16
CCDC88A-213ENST00000476903 PGM5Q15124 567 aa7.83□□□□□ -1.16
CCDC88A-213ENST00000476903 DGKDQ16760 1214 aa7.83□□□□□ -1.16
CCDC88A-213ENST00000476903 FAM47CQ5HY64 1035 aa7.83□□□□□ -1.16
CCDC88A-213ENST00000476903 PSRC1Q6PGN9 363 aaPredicted RBP7.83□□□□□ -1.16
CCDC88A-213ENST00000476903 KCNV1Q6PIU1 500 aa7.83□□□□□ -1.16
CCDC88A-213ENST00000476903 ZNF574Q6ZN55 896 aaPredicted RBP7.83□□□□□ -1.16
CCDC88A-213ENST00000476903 ZNF765Q7L2R6 523 aa7.83□□□□□ -1.16
CCDC88A-213ENST00000476903 SPRED2Q7Z698 418 aa7.83□□□□□ -1.16
CCDC88A-213ENST00000476903 PPTC7Q8NI37 304 aa7.83□□□□□ -1.16
CCDC88A-213ENST00000476903 AFG1LQ8WV93 481 aa7.83□□□□□ -1.16
CCDC88A-213ENST00000476903 PIBF1Q8WXW3 757 aa7.83□□□□□ -1.16
CCDC88A-213ENST00000476903 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.83□□□□□ -1.16
CCDC88A-213ENST00000476903 NOC4LQ9BVI4 516 aaKnown RBP7.83□□□□□ -1.16
CCDC88A-213ENST00000476903 TRMT13Q9NUP7 481 aaKnown RBP7.83□□□□□ -1.16
CCDC88A-213ENST00000476903 STXBP5LQ9Y2K9 1186 aa7.83□□□□□ -1.16
CCDC88A-213ENST00000476903 SLC12A7Q9Y666 1083 aa7.83□□□□□ -1.16
CCDC88A-213ENST00000476903 MRVI1Q9Y6F6 885 aa7.83□□□□□ -1.16
CCDC88A-213ENST00000476903 MYO9BQ13459 2157 aa7.83□□□□□ -1.16
CCDC88A-213ENST00000476903 HSFX4A0A1B0GTS1 333 aaPredicted RBP7.82□□□□□ -1.16
CCDC88A-213ENST00000476903 HSFX3A0A1B0GWH4 333 aaPredicted RBP7.82□□□□□ -1.16
CCDC88A-213ENST00000476903 STAM2O75886 525 aa7.82□□□□□ -1.16
CCDC88A-213ENST00000476903 PLEKHA8P1O95397 391 aa7.82□□□□□ -1.16
CCDC88A-213ENST00000476903 ACRP10323 421 aa7.82□□□□□ -1.16
CCDC88A-213ENST00000476903 TGFB3P10600 412 aa7.82□□□□□ -1.16
CCDC88A-213ENST00000476903 ESRRAP11474 423 aaPredicted RBP7.82□□□□□ -1.16
CCDC88A-213ENST00000476903 CASTP20810 708 aaKnown RBP7.82□□□□□ -1.16
CCDC88A-213ENST00000476903 CCL23P55773 120 aa7.82□□□□□ -1.16
CCDC88A-213ENST00000476903 PTPN11Q06124 597 aaPredicted RBP7.82□□□□□ -1.16
CCDC88A-213ENST00000476903 KRT32Q14532 448 aa7.82□□□□□ -1.16
CCDC88A-213ENST00000476903 TMEM240Q5SV17 173 aa7.82□□□□□ -1.16
CCDC88A-213ENST00000476903 SEZ6L2Q6UXD5 910 aa7.82□□□□□ -1.16
CCDC88A-213ENST00000476903 SYNE3Q6ZMZ3 975 aa7.82□□□□□ -1.16
CCDC88A-213ENST00000476903 SGMS1Q86VZ5 419 aa7.82□□□□□ -1.16
CCDC88A-213ENST00000476903 DHX37Q8IY37 1157 aaKnown RBP7.82□□□□□ -1.16
CCDC88A-213ENST00000476903 SRBD1Q8N5C6 995 aaKnown RBP7.82□□□□□ -1.16
CCDC88A-213ENST00000476903 SMARCC2Q8TAQ2 1214 aa7.82□□□□□ -1.16
CCDC88A-213ENST00000476903 CUL5Q93034 780 aa7.82□□□□□ -1.16
CCDC88A-213ENST00000476903 NEK1Q96PY6 1258 aa7.82□□□□□ -1.16
CCDC88A-213ENST00000476903 OSMRQ99650 979 aa7.82□□□□□ -1.16
CCDC88A-213ENST00000476903 KATNAL1Q9BW62 490 aa7.82□□□□□ -1.16
CCDC88A-213ENST00000476903 LRRC2Q9BYS8 371 aa7.82□□□□□ -1.16
CCDC88A-213ENST00000476903 MTIF3Q9H2K0 278 aaKnown RBP7.82□□□□□ -1.16
CCDC88A-213ENST00000476903 IL23AQ9NPF7 189 aa7.82□□□□□ -1.16
CCDC88A-213ENST00000476903 DDX41Q9UJV9 622 aaKnown RBP7.82□□□□□ -1.16
CCDC88A-213ENST00000476903 FRMPD4Q14CM0 1322 aa7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 UMODL1Q5DID0 1318 aa7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 TMEM265A0A087WTH1 108 aa7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 A6NHS1 94 aa7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 FGBP02675 491 aa7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 NEFLP07196 543 aa7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 PFKMP08237 780 aa7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 NFICP08651 508 aa7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 HMGB1P09429 215 aaKnown RBP7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 CYP2C9P11712 490 aa7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 RXRAP19793 462 aa7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 CHMP4BP1P59074 171 aa7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 BFSP2Q13515 415 aa7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 GNPTABQ3T906 1256 aa7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 CELF3Q5SZQ8 465 aaKnown RBP7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 TMTC3Q6ZXV5 915 aa7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 ZNF365Q70YC5 407 aa7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 C16orf59Q7L2K0 433 aa7.81□□□□□ -1.16
CCDC88A-213ENST00000476903 SESTD1Q86VW0 696 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms