RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 TARSP26639 723 aaKnown RBP9.52□□□□□ -0.89
COL6A3-210ENST00000473258 ALDH18A1P54886 795 aaKnown RBP9.52□□□□□ -0.89
COL6A3-210ENST00000473258 PTPN21Q16825 1174 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 DGUOKQ16854 277 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 KLHL38Q2WGJ6 581 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 SPANXN2Q5MJ10 180 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 TXNDC11Q6PKC3 985 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 LVRNQ6Q4G3 990 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 PPP4R3CPQ6ZMV5 832 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 KRT77Q7Z794 578 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 TAGAPQ8N103 731 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 GALNT15Q8N3T1 639 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 SCG3Q8WXD2 468 aaKnown RBP9.52□□□□□ -0.89
COL6A3-210ENST00000473258 ZNF184Q99676 751 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-210ENST00000473258 NEUROG2Q9H2A3 272 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 NPHS2Q9NP85 383 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 CABP2Q9NPB3 220 aa9.52□□□□□ -0.89
COL6A3-210ENST00000473258 O00370 1275 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 KLHL2O95198 593 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 QARSP47897 775 aaKnown RBP9.51□□□□□ -0.89
COL6A3-210ENST00000473258 BNIPLQ7Z465 357 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 P3H2Q8IVL5 708 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 GIMAP8Q8ND71 665 aaPredicted RBP9.51□□□□□ -0.89
COL6A3-210ENST00000473258 SPATA4Q8NEY3 305 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 ZBTB18Q99592 522 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 ACAT2Q9BWD1 397 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 ARHGEF10LQ9HCE6 1279 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 PCDH12Q9NPG4 1184 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 CUEDC1Q9NWM3 386 aaPredicted RBP9.51□□□□□ -0.89
COL6A3-210ENST00000473258 SLC12A4Q9UP95 1085 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 JAK2O60674 1132 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 EIF4A3P38919 411 aaKnown RBP9.51□□□□□ -0.89
COL6A3-210ENST00000473258 RAB15P59190 212 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 EXOSC10Q01780 885 aaKnown RBP9.51□□□□□ -0.89
COL6A3-210ENST00000473258 TRAF2Q12933 501 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 COG2Q14746 738 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 PERM1Q5SV97 790 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 MAEAQ7L5Y9 396 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 DQX1Q8TE96 717 aaKnown RBP9.51□□□□□ -0.89
COL6A3-210ENST00000473258 CARD14Q9BXL6 1004 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 SAYSD1Q9NPB0 183 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 ARHGEF38Q9NXL2 777 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 ADGRG1Q9Y653 693 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 TTLL13PA6NNM8 815 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 BTBD11A6QL63 1104 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 NOS1APO75052 506 aaPredicted RBP9.51□□□□□ -0.89
COL6A3-210ENST00000473258 USP1O94782 785 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 AKIRIN2Q53H80 203 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 KRT40Q6A162 431 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 TTC27Q6P3X3 843 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 RASSF6Q6ZTQ3 369 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 PROSER2Q86WR7 435 aaPredicted RBP9.51□□□□□ -0.89
COL6A3-210ENST00000473258 CNBD1Q8NA66 436 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 ZIM3Q96PE6 472 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 OSBPL8Q9BZF1 889 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 KCNF1Q9H3M0 494 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 SNRKQ9NRH2 765 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 ZSCAN32Q9NX65 697 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 NSFL1CQ9UNZ2 370 aaKnown RBP9.51□□□□□ -0.89
COL6A3-210ENST00000473258 SMARCA2P51531 1590 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 ZNF862O60290 1169 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 PRKACAP17612 351 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 RPL5P46777 297 aaKnown RBP9.51□□□□□ -0.89
COL6A3-210ENST00000473258 SLC9A3P48764 834 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 PDCD4Q53EL6 469 aaKnown RBP9.51□□□□□ -0.89
COL6A3-210ENST00000473258 ARL8AQ96BM9 186 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 RMND5BQ96G75 393 aaPredicted RBP9.51□□□□□ -0.89
COL6A3-210ENST00000473258 PGBD1Q96JS3 809 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 SLC4A4Q9Y6R1 1079 aa9.51□□□□□ -0.89
COL6A3-210ENST00000473258 PDLIM1O00151 329 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 PHGDHO43175 533 aaKnown RBP9.5□□□□□ -0.89
COL6A3-210ENST00000473258 NAA20P61599 178 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.5□□□□□ -0.89
COL6A3-210ENST00000473258 STX5Q13190 355 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 CAPRIN1Q14444 709 aaKnown RBP9.5□□□□□ -0.89
COL6A3-210ENST00000473258 TOR1AIP2Q8NFQ8 470 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 SLITRK6Q9H5Y7 841 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 NCOA5Q9HCD5 579 aaKnown RBP9.5□□□□□ -0.89
COL6A3-210ENST00000473258 APPL1Q9UKG1 709 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 PIPSLA2A3N6 862 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 SLC27A2O14975 620 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 LPXNO60711 386 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 VAV1P15498 845 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 CCR3P51677 355 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 ARPP19P56211 112 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 GSTA3Q16772 222 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 LLGL2Q6P1M3 1020 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 LRRC74BQ6ZQY2 392 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 SNF8Q96H20 258 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 ZC3H10Q96K80 434 aaKnown RBP9.5□□□□□ -0.89
COL6A3-210ENST00000473258 FAM213AQ9BRX8 229 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 TSSK1BQ9BXA7 367 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 PACSIN1Q9BY11 444 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 CLRN2A0PK11 232 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 H7C0C1 242 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 SNX2O60749 519 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 ATP5OP48047 213 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 ELF3P78545 371 aaPredicted RBP9.5□□□□□ -0.89
COL6A3-210ENST00000473258 LRRC63Q05C16 580 aa9.5□□□□□ -0.89
COL6A3-210ENST00000473258 ITGA9Q13797 1035 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms