RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 PARD6AQ9NPB6 346 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 HELLSQ9NRZ9 838 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 LZTS1Q9Y250 596 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 SQORQ9Y6N5 450 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 NOTCH4Q99466 2003 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 KDM3AQ9Y4C1 1321 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 TTC24A2A3L6 582 aaPredicted RBP6.06□□□□□ -1.44
PTPN4-209ENST00000469511 MEIS3P2A8K0S8 358 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 SFI1A8K8P3 1242 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 TMEM229AB2RXF0 380 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 J3QL48 77 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 MEIS2O14770 477 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 RPS6KA5O75582 802 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 LAG3P18627 525 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 ADD1P35611 737 aaKnown RBP6.06□□□□□ -1.44
PTPN4-209ENST00000469511 HNRNPUQ00839 825 aaKnown RBP eCLIP6.06□□□□□ -1.44
PTPN4-209ENST00000469511 WTAPQ15007 396 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 GNPTABQ3T906 1256 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 CLLU1OSQ5K130 101 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 ATAT1Q5SQI0 421 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 PHLDB3Q6NSJ2 640 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 Q6ZVU0 165 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 SLC24A5Q71RS6 500 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 KIAA0319LQ8IZA0 1049 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 SLC44A3Q8N4M1 653 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 GPR152Q8TDT2 470 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 ESR2Q92731 530 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 GPATCH3Q96I76 525 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 ZNF558Q96NG5 402 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 MYADMQ96S97 322 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 OSMRQ99650 979 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 SENP7Q9BQF6 1050 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 RPP25Q9BUL9 199 aaKnown RBP6.06□□□□□ -1.44
PTPN4-209ENST00000469511 SEMA4AQ9H3S1 761 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 SMARCAD1Q9H4L7 1026 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 NGRNQ9NPE2 291 aaKnown RBP6.06□□□□□ -1.44
PTPN4-209ENST00000469511 ZNF358Q9NW07 568 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 MAP3K20Q9NYL2 800 aaKnown RBP6.06□□□□□ -1.44
PTPN4-209ENST00000469511 ERAP1Q9NZ08 941 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 MTF2Q9Y483 593 aaPredicted RBP6.06□□□□□ -1.44
PTPN4-209ENST00000469511 PCDHA2Q9Y5H9 948 aa6.06□□□□□ -1.44
PTPN4-209ENST00000469511 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP6.05□□□□□ -1.44
PTPN4-209ENST00000469511 SMIM35A0A1B0GVV1 85 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 DENND3A2RUS2 1198 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 ZBTB42B2RXF5 422 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 VTNP04004 478 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 ADRB1P08588 477 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 SRGAP2BP0DMP2 458 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 MX1P20591 662 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 ATP4AP20648 1035 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 FGFR4P22455 802 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 KLRC1P26715 233 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 GDF10P55107 478 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 TBC1D8BQ0IIM8 1120 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 SMC1AQ14683 1233 aaKnown RBP6.05□□□□□ -1.44
PTPN4-209ENST00000469511 UBE2SQ16763 222 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 KIZQ2M2Z5 673 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 LONRF3Q496Y0 759 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 PCNX4Q63HM2 1172 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 TSSK4Q6SA08 328 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 TRMT1LQ7Z2T5 733 aaKnown RBP6.05□□□□□ -1.44
PTPN4-209ENST00000469511 GPR149Q86SP6 731 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 C1orf210Q8IVY1 113 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 VPS52Q8N1B4 723 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.05□□□□□ -1.44
PTPN4-209ENST00000469511 RNF169Q8NCN4 708 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 C1orf216Q8TAB5 229 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 HELQQ8TDG4 1101 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 CHAMP1Q96JM3 812 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 TMEM117Q9H0C3 514 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 ZBP1Q9H171 429 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 IL25Q9H293 177 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 ATP6V0A4Q9HBG4 840 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 TMEM161AQ9NX61 479 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 SPG21Q9NZD8 308 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 WNT16Q9UBV4 365 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 PUF60Q9UHX1 559 aaKnown RBP6.05□□□□□ -1.44
PTPN4-209ENST00000469511 UBIAD1Q9Y5Z9 338 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 PKD1L2Q7Z442 2459 aa6.05□□□□□ -1.44
PTPN4-209ENST00000469511 ZMYM6O95789 1325 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 hCG_1642624A0A1W2PR95 340 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 RRN3P2A6NIE6 340 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 CCER2I3L3R5 266 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 M0QZ92 97 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 ZNF213O14771 459 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 BACH1O14867 736 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 GPR32O75388 356 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 CSDE1O75534 798 aaKnown RBP6.04□□□□□ -1.44
PTPN4-209ENST00000469511 SSBP05455 408 aaKnown RBP eCLIP6.04□□□□□ -1.44
PTPN4-209ENST00000469511 ADH1AP07327 375 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 NCLP19338 710 aaKnown RBP6.04□□□□□ -1.44
PTPN4-209ENST00000469511 CD72P21854 359 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 BCAR1P56945 870 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 ITGB3BPQ13352 177 aaPredicted RBP6.04□□□□□ -1.44
PTPN4-209ENST00000469511 GRM4Q14833 912 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 LPAL2Q16609 132 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 OCLNQ16625 522 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 KIAA0319Q5VV43 1072 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 XRRA1Q6P2D8 792 aa6.04□□□□□ -1.44
PTPN4-209ENST00000469511 CCDC149Q6ZUS6 474 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms