RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 TMCO5AQ8N6Q1 288 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 NAT16Q8N8M0 369 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 RNF214Q8ND24 703 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 LRRC46Q96FV0 321 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 WDR18Q9BV38 432 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 ADI1Q9BV57 179 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 CNTD2Q9H8S5 307 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 SAYSD1Q9NPB0 183 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 SERHLQ9NQF3 203 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 ATP8A2Q9NTI2 1148 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 GJB4Q9NTQ9 266 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 PDRG1Q9NUG6 133 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 LMBRD1Q9NUN5 540 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 CAMSAP3Q9P1Y5 1249 aaPredicted RBP2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 TBC1D29Q9UFV1 150 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 GDF2Q9UK05 429 aaPredicted RBP2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 TMEM5Q9Y2B1 443 aa2.62□□□□□ -1.99
CCDC88A-208ENST00000444458 AQP12BA6NM10 295 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 B3GALNT1O75752 331 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 TMEM253P0C7T8 217 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 TSHRP16473 764 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 PAMP19021 973 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 MTNR1BP49286 362 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 MMP14P50281 582 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 PDE6CP51160 858 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 MAP2K6P52564 334 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 JAM2P57087 298 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 PSMC1P62191 440 aaKnown RBP2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 TLE2Q04725 743 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 SNW1Q13573 536 aaKnown RBP2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 METTL24Q5JXM2 366 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 SULT6B1Q6IMI4 303 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 DYMQ7RTS9 669 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 NKAIN3Q8N8D7 197 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 NRG4Q8WWG1 115 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 KAT5Q92993 513 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 CUL5Q93034 780 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 SLC35A4Q96G79 324 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 COG8Q96MW5 612 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 KCNC2Q96PR1 638 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 TREX2Q9BQ50 279 aaPredicted RBP2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 FSD1Q9BTV5 496 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 ZMAT3Q9HA38 289 aaKnown RBP2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 CHST7Q9NS84 486 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 TOR4AQ9NXH8 423 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 CACNA2D2Q9NY47 1150 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 USP36Q9P275 1121 aaKnown RBP2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 TMEFF2Q9UIK5 374 aaPredicted RBP2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 DENND2AQ9ULE3 1009 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 ST14Q9Y5Y6 855 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 SYNJ2O15056 1496 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 IPO5O00410 1097 aaKnown RBP2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 FSCN2O14926 492 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 PIP5K1BO14986 540 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 SHOXO15266 292 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 DOK2O60496 412 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 CAPNS1P04632 268 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 COL6A2P12110 1019 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 PSMA3P25788 255 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 CAP2P40123 477 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 COPAP53621 1224 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 UBE3AQ05086 875 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 CHAF1BQ13112 559 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 PTK2BQ14289 1009 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 TTLL4Q14679 1199 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 KLHDC10Q6PID8 442 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 COL23A1Q86Y22 540 aaPredicted RBP2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 BRSK2Q8IWQ3 736 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 TOR1AIP2Q8NFQ8 470 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 JAKMIP2Q96AA8 810 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 SH3KBP1Q96B97 665 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 ASPNQ9BXN1 380 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 C22orf23Q9BZE7 217 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 PRDM6Q9NQX0 595 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 PI4KAP2A4QPH2 592 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 TISP43B9A030 160 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 B9A039 149 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 SYT5O00445 386 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 HNRNPDLO14979 420 aaKnown RBP2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 THAP12O43422 761 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 GSNP06396 782 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 IFNGR1P15260 489 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 SUMO3P55854 103 aaPredicted RBP2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 LGALS4P56470 323 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 KRT83P78385 493 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 CNGA2Q16280 664 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 SLC35G1Q2M3R5 365 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 KIAA1614Q5VZ46 1190 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 CRTC3Q6UUV7 619 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 TMC6Q7Z403 805 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 SDCCAG8Q86SQ7 713 aaPredicted RBP2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 GATAD2AQ86YP4 633 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 CREG2Q8IUH2 290 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 ATP11CQ8NB49 1132 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 FANCBQ8NB91 859 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 RCBTB1Q8NDN9 531 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 CEP70Q8NHQ1 597 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 IPO4Q8TEX9 1081 aaKnown RBP2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 SNX21Q969T3 373 aa2.61□□□□□ -1.99
CCDC88A-208ENST00000444458 C7orf26Q96N11 449 aa2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms