RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 LBX2Q6XYB7 198 aa13.92□□□□□ -0.18
PTCH1-207ENST00000429896 CCT6BQ92526 530 aa13.92□□□□□ -0.18
PTCH1-207ENST00000429896 DNAJC18Q9H819 358 aa13.92□□□□□ -0.18
PTCH1-207ENST00000429896 UBE4BO95155 1302 aa13.91□□□□□ -0.18
PTCH1-207ENST00000429896 TRAPPC3O43617 180 aa13.91□□□□□ -0.18
PTCH1-207ENST00000429896 AOC2O75106 756 aa13.91□□□□□ -0.18
PTCH1-207ENST00000429896 SYT2Q8N9I0 419 aaPredicted RBP13.91□□□□□ -0.18
PTCH1-207ENST00000429896 C4AP0C0L4 1744 aa13.91□□□□□ -0.18
PTCH1-207ENST00000429896 FOXN1O15353 648 aa13.91□□□□□ -0.18
PTCH1-207ENST00000429896 STK10O94804 968 aaKnown RBP13.91□□□□□ -0.18
PTCH1-207ENST00000429896 BEX3Q00994 111 aa13.91□□□□□ -0.18
PTCH1-207ENST00000429896 CLEC17AQ6ZS10 378 aa13.91□□□□□ -0.18
PTCH1-207ENST00000429896 TRIM11Q96F44 468 aa13.91□□□□□ -0.18
PTCH1-207ENST00000429896 TMEM39AQ9NV64 488 aa13.91□□□□□ -0.18
PTCH1-207ENST00000429896 ITGB4P16144 1822 aa13.91□□□□□ -0.18
PTCH1-207ENST00000429896 CLCN3P51790 818 aa13.91□□□□□ -0.18
PTCH1-207ENST00000429896 HADHQ16836 314 aaKnown RBP13.91□□□□□ -0.18
PTCH1-207ENST00000429896 CCDC144BQ3MJ40 725 aa13.91□□□□□ -0.18
PTCH1-207ENST00000429896 CELF3Q5SZQ8 465 aaKnown RBP13.91□□□□□ -0.18
PTCH1-207ENST00000429896 VSIG10LQ86VR7 867 aa13.91□□□□□ -0.18
PTCH1-207ENST00000429896 ARFGAP3Q9NP61 516 aa13.91□□□□□ -0.18
PTCH1-207ENST00000429896 HSPBP1Q9NZL4 362 aa13.91□□□□□ -0.18
PTCH1-207ENST00000429896 PTPROQ16827 1216 aa13.91□□□□□ -0.18
PTCH1-207ENST00000429896 DCAF4L1Q3SXM0 396 aa13.91□□□□□ -0.18
PTCH1-207ENST00000429896 NFRKBQ6P4R8 1299 aa13.91□□□□□ -0.18
PTCH1-207ENST00000429896 PPP2R3CQ969Q6 453 aa13.91□□□□□ -0.18
PTCH1-207ENST00000429896 HVCN1Q96D96 273 aa13.91□□□□□ -0.18
PTCH1-207ENST00000429896 SLC38A7Q9NVC3 462 aa13.91□□□□□ -0.18
PTCH1-207ENST00000429896 SLC45A1Q9Y2W3 748 aa13.91□□□□□ -0.18
PTCH1-207ENST00000429896 SYNGAP1Q96PV0 1343 aa13.91□□□□□ -0.18
PTCH1-207ENST00000429896 PLIN4Q96Q06 1357 aa13.91□□□□□ -0.18
PTCH1-207ENST00000429896 ATP2A1O14983 1001 aa13.9□□□□□ -0.18
PTCH1-207ENST00000429896 DUOXA2Q1HG44 320 aa13.9□□□□□ -0.18
PTCH1-207ENST00000429896 CCDC77Q9BR77 488 aa13.9□□□□□ -0.18
PTCH1-207ENST00000429896 POLIQ9UNA4 740 aa13.9□□□□□ -0.18
PTCH1-207ENST00000429896 NPTXRO95502 500 aa13.9□□□□□ -0.18
PTCH1-207ENST00000429896 C12orf42Q96LP6 360 aa13.9□□□□□ -0.18
PTCH1-207ENST00000429896 CNTNAP1P78357 1384 aa13.9□□□□□ -0.18
PTCH1-207ENST00000429896 NUP188Q5SRE5 1749 aa13.9□□□□□ -0.18
PTCH1-207ENST00000429896 GRB10Q13322 594 aa13.9□□□□□ -0.18
PTCH1-207ENST00000429896 BIRC2Q13490 618 aa13.9□□□□□ -0.18
PTCH1-207ENST00000429896 KRT81Q14533 505 aa13.9□□□□□ -0.18
PTCH1-207ENST00000429896 DAAM2Q86T65 1068 aa13.9□□□□□ -0.18
PTCH1-207ENST00000429896 CYP2W1Q8TAV3 490 aa13.9□□□□□ -0.18
PTCH1-207ENST00000429896 PRPF31Q8WWY3 499 aaKnown RBP13.9□□□□□ -0.18
PTCH1-207ENST00000429896 MRFAP1L1Q96HT8 127 aa13.9□□□□□ -0.18
PTCH1-207ENST00000429896 INSRRP14616 1297 aa13.9□□□□□ -0.18
PTCH1-207ENST00000429896 UBA1P22314 1058 aaKnown RBP13.9□□□□□ -0.18
PTCH1-207ENST00000429896 BRI3BPQ8WY22 251 aa13.9□□□□□ -0.18
PTCH1-207ENST00000429896 SENP6Q9GZR1 1112 aaPredicted RBP13.9□□□□□ -0.18
PTCH1-207ENST00000429896 SYNJ2BP-COX16A0A087WUM0 186 aa13.9□□□□□ -0.18
PTCH1-207ENST00000429896 PTGISQ16647 500 aa13.9□□□□□ -0.18
PTCH1-207ENST00000429896 KRT39Q6A163 491 aa13.9□□□□□ -0.18
PTCH1-207ENST00000429896 RASAL3Q86YV0 1011 aa13.9□□□□□ -0.18
PTCH1-207ENST00000429896 REPS2Q8NFH8 660 aa13.9□□□□□ -0.18
PTCH1-207ENST00000429896 COX16Q9P0S2 106 aa13.9□□□□□ -0.18
PTCH1-207ENST00000429896 EIF3DO15371 548 aaKnown RBP eCLIP13.89□□□□□ -0.19
PTCH1-207ENST00000429896 SNHG28P0DPA3 235 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 GRK4P32298 578 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 PRMT2P55345 433 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 CPLX4Q7Z7G2 160 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 NOP9Q86U38 636 aaKnown RBP13.89□□□□□ -0.19
PTCH1-207ENST00000429896 TTC39CQ8N584 583 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 SLAIN1Q8ND83 568 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 RUSC1Q9BVN2 902 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 TRIM7Q9C029 511 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 TADA2AO75478 443 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 GFPT2O94808 682 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 MYBP10242 640 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 DPYDQ12882 1025 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 FAM149B1Q96BN6 582 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.89□□□□□ -0.19
PTCH1-207ENST00000429896 IGKV6D-41A0A0C4DH26 115 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 SLC16A3O15427 465 aaKnown RBP13.89□□□□□ -0.19
PTCH1-207ENST00000429896 SLU7O95391 586 aaKnown RBP13.89□□□□□ -0.19
PTCH1-207ENST00000429896 VTNP04004 478 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 SNRPFP62306 86 aaKnown RBP13.89□□□□□ -0.19
PTCH1-207ENST00000429896 TRIM50Q86XT4 487 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 DBR1Q9UK59 544 aaKnown RBP13.89□□□□□ -0.19
PTCH1-207ENST00000429896 TLR2O60603 784 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 IL18RAPO95256 599 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 GAS8O95995 478 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 TOB1P50616 345 aaPredicted RBP13.89□□□□□ -0.19
PTCH1-207ENST00000429896 TMEM132DQ14C87 1099 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 KRT31Q15323 416 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 RINT1Q6NUQ1 792 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 METTL16Q86W50 562 aaKnown RBP13.89□□□□□ -0.19
PTCH1-207ENST00000429896 NKX2-3Q8TAU0 364 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 TTC36A6NLP5 189 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 LGALS2P05162 132 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 TBXAS1P24557 533 aaPredicted RBP13.89□□□□□ -0.19
PTCH1-207ENST00000429896 CASP14P31944 242 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 NAMPTP43490 491 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 CRHR2Q13324 411 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 BSPRYQ5W0U4 402 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 PURBQ96QR8 312 aaKnown RBP13.89□□□□□ -0.19
PTCH1-207ENST00000429896 MAF1Q9H063 256 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 TLL2Q9Y6L7 1015 aa13.89□□□□□ -0.19
PTCH1-207ENST00000429896 TYW5A2RUC4 315 aaKnown RBP13.88□□□□□ -0.19
PTCH1-207ENST00000429896 CAPN2P17655 700 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms