RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 RFC5P40937 340 aa12.92□□□□□ -0.34
USP4-204ENST00000416417 ZBTB33Q86T24 672 aa12.92□□□□□ -0.34
USP4-204ENST00000416417 FERMT3Q86UX7 667 aa12.92□□□□□ -0.34
USP4-204ENST00000416417 PRSS33Q8NF86 280 aa12.92□□□□□ -0.34
USP4-204ENST00000416417 ASAP3Q8TDY4 903 aa12.92□□□□□ -0.34
USP4-204ENST00000416417 EIF2AK1Q9BQI3 630 aaKnown RBP12.92□□□□□ -0.34
USP4-204ENST00000416417 EIF2AQ9BY44 585 aaKnown RBP12.92□□□□□ -0.34
USP4-204ENST00000416417 HES2Q9Y543 173 aa12.92□□□□□ -0.34
USP4-204ENST00000416417 FSD2A1L4K1 749 aa12.91□□□□□ -0.34
USP4-204ENST00000416417 F8W810 466 aa12.91□□□□□ -0.34
USP4-204ENST00000416417 TBX3O15119 743 aa12.91□□□□□ -0.34
USP4-204ENST00000416417 DKC1O60832 514 aaKnown RBP eCLIP12.91□□□□□ -0.34
USP4-204ENST00000416417 BAG4O95429 457 aaKnown RBP12.91□□□□□ -0.34
USP4-204ENST00000416417 CTSAP10619 480 aa12.91□□□□□ -0.34
USP4-204ENST00000416417 SKIP12755 728 aa12.91□□□□□ -0.34
USP4-204ENST00000416417 TXKP42681 527 aa12.91□□□□□ -0.34
USP4-204ENST00000416417 RAB27AP51159 221 aa12.91□□□□□ -0.34
USP4-204ENST00000416417 VCPP55072 806 aaKnown RBP12.91□□□□□ -0.34
USP4-204ENST00000416417 GUCY1B3Q02153 619 aa12.91□□□□□ -0.34
USP4-204ENST00000416417 ST3GAL1Q11201 340 aa12.91□□□□□ -0.34
USP4-204ENST00000416417 PTPN21Q16825 1174 aa12.91□□□□□ -0.34
USP4-204ENST00000416417 TPRNQ4KMQ1 711 aa12.91□□□□□ -0.34
USP4-204ENST00000416417 TAS1R1Q7RTX1 841 aa12.91□□□□□ -0.34
USP4-204ENST00000416417 SRGAP1Q7Z6B7 1085 aa12.91□□□□□ -0.34
USP4-204ENST00000416417 MRPL10Q7Z7H8 261 aaKnown RBP12.91□□□□□ -0.34
USP4-204ENST00000416417 DDX53Q86TM3 631 aaKnown RBP12.91□□□□□ -0.34
USP4-204ENST00000416417 CDR2LQ86X02 465 aaPredicted RBP12.91□□□□□ -0.34
USP4-204ENST00000416417 TMEM87AQ8NBN3 555 aa12.91□□□□□ -0.34
USP4-204ENST00000416417 SMG8Q8ND04 991 aaKnown RBP12.91□□□□□ -0.34
USP4-204ENST00000416417 NSUN7Q8NE18 718 aaKnown RBP12.91□□□□□ -0.34
USP4-204ENST00000416417 GTF3C6Q969F1 213 aa12.91□□□□□ -0.34
USP4-204ENST00000416417 PGBD4Q96DM1 585 aa12.91□□□□□ -0.34
USP4-204ENST00000416417 MTRQ99707 1265 aa12.91□□□□□ -0.34
USP4-204ENST00000416417 APOL6Q9BWW8 343 aa12.91□□□□□ -0.34
USP4-204ENST00000416417 ADAM7Q9H2U9 754 aa12.91□□□□□ -0.34
USP4-204ENST00000416417 ZSWIM4Q9H7M6 989 aa12.91□□□□□ -0.34
USP4-204ENST00000416417 RSAD1Q9HA92 442 aa12.91□□□□□ -0.34
USP4-204ENST00000416417 PRG3Q9Y2Y8 225 aaPredicted RBP12.91□□□□□ -0.34
USP4-204ENST00000416417 MUC6Q6W4X9 2439 aa12.9□□□□□ -0.34
USP4-204ENST00000416417 C2CD2LO14523 706 aa12.9□□□□□ -0.34
USP4-204ENST00000416417 TSPAN1O60635 241 aa12.9□□□□□ -0.34
USP4-204ENST00000416417 SEC24BO95487 1268 aa12.9□□□□□ -0.34
USP4-204ENST00000416417 ASGR2P07307 311 aa12.9□□□□□ -0.34
USP4-204ENST00000416417 HOXB8P17481 243 aaPredicted RBP12.9□□□□□ -0.34
USP4-204ENST00000416417 MRE11P49959 708 aa12.9□□□□□ -0.34
USP4-204ENST00000416417 PTPN14Q15678 1187 aa12.9□□□□□ -0.34
USP4-204ENST00000416417 CALCRLQ16602 461 aa12.9□□□□□ -0.34
USP4-204ENST00000416417 CES5AQ6NT32 575 aa12.9□□□□□ -0.34
USP4-204ENST00000416417 TMC5Q6UXY8 1006 aa12.9□□□□□ -0.34
USP4-204ENST00000416417 MAEAQ7L5Y9 396 aa12.9□□□□□ -0.34
USP4-204ENST00000416417 OTUD6AQ7L8S5 288 aa12.9□□□□□ -0.34
USP4-204ENST00000416417 DIS3L2Q8IYB7 885 aaKnown RBP12.9□□□□□ -0.34
USP4-204ENST00000416417 KREMEN2Q8NCW0 462 aa12.9□□□□□ -0.34
USP4-204ENST00000416417 URGCPQ8TCY9 931 aa12.9□□□□□ -0.34
USP4-204ENST00000416417 PIGOQ8TEQ8 1089 aa12.9□□□□□ -0.34
USP4-204ENST00000416417 SLC22A17Q8WUG5 538 aa12.9□□□□□ -0.34
USP4-204ENST00000416417 WASF1Q92558 559 aa12.9□□□□□ -0.34
USP4-204ENST00000416417 ASIC4Q96FT7 647 aa12.9□□□□□ -0.34
USP4-204ENST00000416417 NAP1L4Q99733 375 aaKnown RBP12.9□□□□□ -0.34
USP4-204ENST00000416417 MIOSQ9NXC5 875 aa12.9□□□□□ -0.34
USP4-204ENST00000416417 INO80B-WBP1J3KQ70 363 aa12.89□□□□□ -0.35
USP4-204ENST00000416417 NRP1O14786 923 aa12.89□□□□□ -0.35
USP4-204ENST00000416417 B4GALT5O43286 388 aa12.89□□□□□ -0.35
USP4-204ENST00000416417 ERLIN2O94905 339 aa12.89□□□□□ -0.35
USP4-204ENST00000416417 ITGA4P13612 1032 aa12.89□□□□□ -0.35
USP4-204ENST00000416417 NEK4P51957 841 aa12.89□□□□□ -0.35
USP4-204ENST00000416417 SIGLEC14Q08ET2 396 aa12.89□□□□□ -0.35
USP4-204ENST00000416417 CAPSQ13938 189 aa12.89□□□□□ -0.35
USP4-204ENST00000416417 ANKRD1Q15327 319 aa12.89□□□□□ -0.35
USP4-204ENST00000416417 BMP8AQ7Z5Y6 402 aa12.89□□□□□ -0.35
USP4-204ENST00000416417 SLFN12Q8IYM2 578 aa12.89□□□□□ -0.35
USP4-204ENST00000416417 TCP11Q8WWU5 503 aa12.89□□□□□ -0.35
USP4-204ENST00000416417 RABGGTAQ92696 567 aa12.89□□□□□ -0.35
USP4-204ENST00000416417 ZFP42Q96MM3 310 aa12.89□□□□□ -0.35
USP4-204ENST00000416417 FAM193BQ96PV7 902 aaPredicted RBP12.89□□□□□ -0.35
USP4-204ENST00000416417 GAD1Q99259 594 aa12.89□□□□□ -0.35
USP4-204ENST00000416417 TMEM60Q9H2L4 133 aa12.89□□□□□ -0.35
USP4-204ENST00000416417 TTC12Q9H892 705 aaPredicted RBP12.89□□□□□ -0.35
USP4-204ENST00000416417 BRMS1Q9HCU9 246 aa12.89□□□□□ -0.35
USP4-204ENST00000416417 PCDHA12Q9UN75 941 aa12.89□□□□□ -0.35
USP4-204ENST00000416417 FAN1Q9Y2M0 1017 aa12.89□□□□□ -0.35
USP4-204ENST00000416417 IPPQ9Y573 584 aa12.89□□□□□ -0.35
USP4-204ENST00000416417 POTEMA6NI47 508 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 BRD1O95696 1058 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 CNPP09543 421 aaKnown RBP12.88□□□□□ -0.35
USP4-204ENST00000416417 NCLP19338 710 aaKnown RBP12.88□□□□□ -0.35
USP4-204ENST00000416417 KLRC2P26717 231 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 MLH1P40692 756 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 OR1G1P47890 313 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 SCNN1GP51170 649 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 ANAPC15P60006 121 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 PTENP60484 403 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 ITIH3Q06033 890 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 BMS1Q14692 1282 aaKnown RBP12.88□□□□□ -0.35
USP4-204ENST00000416417 SUGP1Q8IWZ8 645 aaKnown RBP12.88□□□□□ -0.35
USP4-204ENST00000416417 FBXL6Q8N531 539 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 KLHL5Q96PQ7 755 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 HSD17B14Q9BPX1 270 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 GPRC5CQ9NQ84 441 aa12.88□□□□□ -0.35
USP4-204ENST00000416417 MARCH5Q9NX47 278 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms