RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 ANKRD13AQ8IZ07 590 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 GPD1LQ8N335 351 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 AGPAT3Q9NRZ7 376 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 PCSK1NQ9UHG2 260 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 ODF2LQ9ULJ1 636 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 IQCA1LA6NCM1 817 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 KLRC1P26715 233 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 E2F4Q16254 413 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 WDR72Q3MJ13 1102 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 HAS1Q92839 578 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 EXOC4Q96A65 974 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 SUCLA2Q9P2R7 463 aaPredicted RBP12□□□□□ -0.49
PTPRF-204ENST00000412568 A0A087X0T9 212 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 POC1B-GALNT4F8VUJ3 575 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 MEIS2O14770 477 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 PEX10O60683 326 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 VIL1P09327 827 aaKnown RBP12□□□□□ -0.49
PTPRF-204ENST00000412568 FAM228BP0C875 321 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 CIITAP33076 1130 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 GALCP54803 685 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 EMC2Q15006 297 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 CENPPQ6IPU0 288 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 RFX6Q8HWS3 928 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 SPATA4Q8NEY3 305 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 TBK1Q9UHD2 729 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 CAPN7Q9Y6W3 813 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 LDHAP00338 332 aaKnown RBP12□□□□□ -0.49
PTPRF-204ENST00000412568 ATF2P15336 505 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 MAP2K2P36507 400 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 CLNS1AP54105 237 aaKnown RBP12□□□□□ -0.49
PTPRF-204ENST00000412568 GPC5P78333 572 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 EDRF1Q3B7T1 1238 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 C10orf76Q5T2E6 689 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 PPP1R13LQ8WUF5 828 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 TCP11Q8WWU5 503 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 RSRC1Q96IZ7 334 aaKnown RBP12□□□□□ -0.49
PTPRF-204ENST00000412568 PBKQ96KB5 322 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 FAM167AQ96KS9 214 aa12□□□□□ -0.49
PTPRF-204ENST00000412568 ASTN2O75129 1339 aaPredicted RBP12□□□□□ -0.49
PTPRF-204ENST00000412568 FAM237AA0A1B0GTK4 181 aa11.99□□□□□ -0.49
PTPRF-204ENST00000412568 A6NNZ2 444 aa11.99□□□□□ -0.49
PTPRF-204ENST00000412568 HUNKP57058 714 aa11.99□□□□□ -0.49
PTPRF-204ENST00000412568 TAF1CQ15572 869 aaPredicted RBP11.99□□□□□ -0.49
PTPRF-204ENST00000412568 SLC18A3Q16572 532 aa11.99□□□□□ -0.49
PTPRF-204ENST00000412568 TUBB8Q3ZCM7 444 aa11.99□□□□□ -0.49
PTPRF-204ENST00000412568 CPA5Q8WXQ8 436 aa11.99□□□□□ -0.49
PTPRF-204ENST00000412568 POLR3CQ9BUI4 534 aaPredicted RBP11.99□□□□□ -0.49
PTPRF-204ENST00000412568 NUP85Q9BW27 656 aa11.99□□□□□ -0.49
PTPRF-204ENST00000412568 PITPNM2Q9BZ72 1349 aa11.99□□□□□ -0.49
PTPRF-204ENST00000412568 SNX25Q9H3E2 840 aa11.99□□□□□ -0.49
PTPRF-204ENST00000412568 INTS13Q9NVM9 706 aa11.99□□□□□ -0.49
PTPRF-204ENST00000412568 TISP43B9A030 160 aa11.99□□□□□ -0.49
PTPRF-204ENST00000412568 PPP1R11O60927 126 aaPredicted RBP11.99□□□□□ -0.49
PTPRF-204ENST00000412568 PPP2R5EQ16537 467 aa11.99□□□□□ -0.49
PTPRF-204ENST00000412568 PPP6R3Q5H9R7 873 aaPredicted RBP11.99□□□□□ -0.49
PTPRF-204ENST00000412568 HP1BP3Q5SSJ5 553 aaPredicted RBP11.99□□□□□ -0.49
PTPRF-204ENST00000412568 TRIM50Q86XT4 487 aa11.99□□□□□ -0.49
PTPRF-204ENST00000412568 FBXO16Q8IX29 292 aaPredicted RBP11.99□□□□□ -0.49
PTPRF-204ENST00000412568 RNF10Q8N5U6 811 aaKnown RBP11.99□□□□□ -0.49
PTPRF-204ENST00000412568 DUSP9Q99956 384 aaKnown RBP11.99□□□□□ -0.49
PTPRF-204ENST00000412568 LRRC1Q9BTT6 524 aa11.99□□□□□ -0.49
PTPRF-204ENST00000412568 MRPL4Q9BYD3 311 aaKnown RBP11.99□□□□□ -0.49
PTPRF-204ENST00000412568 APEX2Q9UBZ4 518 aa11.99□□□□□ -0.49
PTPRF-204ENST00000412568 SNX12Q9UMY4 172 aa11.99□□□□□ -0.49
PTPRF-204ENST00000412568 SLITRK3O94933 977 aa11.99□□□□□ -0.49
PTPRF-204ENST00000412568 CELF2O95319 508 aaKnown RBP11.99□□□□□ -0.49
PTPRF-204ENST00000412568 PRKCBP05771 671 aa11.99□□□□□ -0.49
PTPRF-204ENST00000412568 GNA15P30679 374 aa11.99□□□□□ -0.49
PTPRF-204ENST00000412568 TCF7P36402 384 aaPredicted RBP11.99□□□□□ -0.49
PTPRF-204ENST00000412568 SNX16P57768 344 aa11.99□□□□□ -0.49
PTPRF-204ENST00000412568 DLK2Q6UY11 383 aa11.99□□□□□ -0.49
PTPRF-204ENST00000412568 TSNARE1Q96NA8 513 aa11.99□□□□□ -0.49
PTPRF-204ENST00000412568 KLHL11Q9NVR0 708 aa11.99□□□□□ -0.49
PTPRF-204ENST00000412568 BAIAP2L1Q9UHR4 511 aa11.99□□□□□ -0.49
PTPRF-204ENST00000412568 RRP15Q9Y3B9 282 aaKnown RBP11.99□□□□□ -0.49
PTPRF-204ENST00000412568 KCPQ6ZWJ8 1503 aa11.99□□□□□ -0.49
PTPRF-204ENST00000412568 A0A0U1RQJ8 604 aa11.98□□□□□ -0.49
PTPRF-204ENST00000412568 CTSHP09668 335 aa11.98□□□□□ -0.49
PTPRF-204ENST00000412568 PHKA2P46019 1235 aa11.98□□□□□ -0.49
PTPRF-204ENST00000412568 TRIM65Q6PJ69 517 aa11.98□□□□□ -0.49
PTPRF-204ENST00000412568 PALM2Q8IXS6 379 aa11.98□□□□□ -0.49
PTPRF-204ENST00000412568 ZNF564Q8TBZ8 553 aaPredicted RBP11.98□□□□□ -0.49
PTPRF-204ENST00000412568 MRPL47Q9HD33 250 aaKnown RBP11.98□□□□□ -0.49
PTPRF-204ENST00000412568 TTC7AQ9ULT0 858 aaPredicted RBP11.98□□□□□ -0.49
PTPRF-204ENST00000412568 MAD1L1Q9Y6D9 718 aa11.98□□□□□ -0.49
PTPRF-204ENST00000412568 PASKQ96RG2 1323 aa11.98□□□□□ -0.49
PTPRF-204ENST00000412568 VWA5AO00534 786 aa11.98□□□□□ -0.49
PTPRF-204ENST00000412568 GGCXP38435 758 aa11.98□□□□□ -0.49
PTPRF-204ENST00000412568 GPC3P51654 580 aa11.98□□□□□ -0.49
PTPRF-204ENST00000412568 ZNF157P51786 506 aaPredicted RBP11.98□□□□□ -0.49
PTPRF-204ENST00000412568 CASP5P51878 434 aa11.98□□□□□ -0.49
PTPRF-204ENST00000412568 NNTQ13423 1086 aa11.98□□□□□ -0.49
PTPRF-204ENST00000412568 SNAPC2Q13487 334 aa11.98□□□□□ -0.49
PTPRF-204ENST00000412568 SH3BP5LQ7L8J4 393 aa11.98□□□□□ -0.49
PTPRF-204ENST00000412568 HSPH1Q92598 858 aa11.98□□□□□ -0.49
PTPRF-204ENST00000412568 EDEM3Q9BZQ6 932 aa11.98□□□□□ -0.49
PTPRF-204ENST00000412568 FHDC1Q9C0D6 1143 aaPredicted RBP11.98□□□□□ -0.49
PTPRF-204ENST00000412568 IKZF4Q9H2S9 585 aa11.98□□□□□ -0.49
PTPRF-204ENST00000412568 AMACRQ9UHK6 382 aa11.98□□□□□ -0.49
PTPRF-204ENST00000412568 BCL9LQ86UU0 1499 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms