RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 NUP98P52948 1817 aa7.87□□□□□ -1.15
USP40-202ENST00000409945 ARFGEF1Q9Y6D6 1849 aa7.87□□□□□ -1.15
USP40-202ENST00000409945 NUDT19A8MXV4 375 aa7.86□□□□□ -1.15
USP40-202ENST00000409945 BRINP1O60477 761 aa7.86□□□□□ -1.15
USP40-202ENST00000409945 TADA3O75528 432 aa7.86□□□□□ -1.15
USP40-202ENST00000409945 SRGNP10124 158 aa7.86□□□□□ -1.15
USP40-202ENST00000409945 GRIN1Q05586 938 aa7.86□□□□□ -1.15
USP40-202ENST00000409945 SPIRE1Q08AE8 756 aa7.86□□□□□ -1.15
USP40-202ENST00000409945 SPATS2Q86XZ4 545 aaKnown RBP7.86□□□□□ -1.15
USP40-202ENST00000409945 JDP2Q8WYK2 163 aa7.86□□□□□ -1.15
USP40-202ENST00000409945 TSR2Q969E8 191 aaKnown RBP7.86□□□□□ -1.15
USP40-202ENST00000409945 BOCQ9BWV1 1114 aa7.86□□□□□ -1.15
USP40-202ENST00000409945 RBPJLQ9UBG7 517 aa7.86□□□□□ -1.15
USP40-202ENST00000409945 SLC12A8A0AV02 714 aa7.86□□□□□ -1.15
USP40-202ENST00000409945 ACOT7O00154 380 aa7.86□□□□□ -1.15
USP40-202ENST00000409945 MARCH6O60337 910 aa7.86□□□□□ -1.15
USP40-202ENST00000409945 S100BP04271 92 aaPredicted RBP7.86□□□□□ -1.15
USP40-202ENST00000409945 LSSP48449 732 aa7.86□□□□□ -1.15
USP40-202ENST00000409945 TUSC3Q13454 348 aa7.86□□□□□ -1.15
USP40-202ENST00000409945 LRRC41Q15345 812 aa7.86□□□□□ -1.15
USP40-202ENST00000409945 PROSER3Q2NL68 480 aa7.86□□□□□ -1.15
USP40-202ENST00000409945 EMC4Q5J8M3 183 aa7.86□□□□□ -1.15
USP40-202ENST00000409945 BROXQ5VW32 411 aa7.86□□□□□ -1.15
USP40-202ENST00000409945 RNF219Q5W0B1 726 aaPredicted RBP7.86□□□□□ -1.15
USP40-202ENST00000409945 SPPL2CQ8IUH8 684 aa7.86□□□□□ -1.15
USP40-202ENST00000409945 KIAA1958Q8N8K9 716 aa7.86□□□□□ -1.15
USP40-202ENST00000409945 C8orf58Q8NAV2 365 aa7.86□□□□□ -1.15
USP40-202ENST00000409945 YTHDC1Q96MU7 727 aaKnown RBP7.86□□□□□ -1.15
USP40-202ENST00000409945 SEMA4AQ9H3S1 761 aa7.86□□□□□ -1.15
USP40-202ENST00000409945 TYW1Q9NV66 732 aaKnown RBP7.86□□□□□ -1.15
USP40-202ENST00000409945 MYOTQ9UBF9 498 aa7.86□□□□□ -1.15
USP40-202ENST00000409945 UTRNP46939 3433 aa7.85□□□□□ -1.15
USP40-202ENST00000409945 KIAA1551Q9HCM1 1747 aa7.85□□□□□ -1.15
USP40-202ENST00000409945 SH3TC1Q8TE82 1336 aa7.85□□□□□ -1.15
USP40-202ENST00000409945 BRCA1P38398 1863 aaKnown RBP7.85□□□□□ -1.15
USP40-202ENST00000409945 DLEC1Q9Y238 1755 aa7.85□□□□□ -1.15
USP40-202ENST00000409945 GSTA4O15217 222 aa7.85□□□□□ -1.15
USP40-202ENST00000409945 ZEB2O60315 1214 aa7.85□□□□□ -1.15
USP40-202ENST00000409945 ALDH1L1O75891 902 aa7.85□□□□□ -1.15
USP40-202ENST00000409945 SART3Q15020 963 aaKnown RBP7.85□□□□□ -1.15
USP40-202ENST00000409945 CCDC93Q567U6 631 aa7.85□□□□□ -1.15
USP40-202ENST00000409945 SUSD4Q5VX71 490 aa7.85□□□□□ -1.15
USP40-202ENST00000409945 KCTD1Q719H9 257 aa7.85□□□□□ -1.15
USP40-202ENST00000409945 MILR1Q7Z6M3 343 aa7.85□□□□□ -1.15
USP40-202ENST00000409945 RTKN2Q8IZC4 609 aa7.85□□□□□ -1.15
USP40-202ENST00000409945 KCNK12Q9HB15 430 aa7.85□□□□□ -1.15
USP40-202ENST00000409945 RNF181Q9P0P0 153 aa7.85□□□□□ -1.15
USP40-202ENST00000409945 B3GALT1Q9Y5Z6 326 aa7.85□□□□□ -1.15
USP40-202ENST00000409945 OAS3Q9Y6K5 1087 aaKnown RBP7.85□□□□□ -1.15
USP40-202ENST00000409945 RIC1Q4ADV7 1423 aa7.85□□□□□ -1.15
USP40-202ENST00000409945 FANCIQ9NVI1 1328 aa7.85□□□□□ -1.15
USP40-202ENST00000409945 TCRBV5S2A0A599 114 aa7.84□□□□□ -1.15
USP40-202ENST00000409945 KLRG2A4D1S0 409 aaPredicted RBP7.84□□□□□ -1.15
USP40-202ENST00000409945 PMLP29590 882 aa7.84□□□□□ -1.15
USP40-202ENST00000409945 IARSP41252 1262 aaKnown RBP7.84□□□□□ -1.15
USP40-202ENST00000409945 KPNA1P52294 538 aaPredicted RBP7.84□□□□□ -1.15
USP40-202ENST00000409945 KIF11P52732 1056 aa7.84□□□□□ -1.15
USP40-202ENST00000409945 ERVK-21P61565 698 aa7.84□□□□□ -1.15
USP40-202ENST00000409945 LRP8Q14114 963 aa7.84□□□□□ -1.15
USP40-202ENST00000409945 TTF1Q15361 905 aaPredicted RBP7.84□□□□□ -1.15
USP40-202ENST00000409945 ABCB5Q2M3G0 1257 aa7.84□□□□□ -1.15
USP40-202ENST00000409945 ADGRF1Q5T601 910 aa7.84□□□□□ -1.15
USP40-202ENST00000409945 RPTNQ6XPR3 784 aa7.84□□□□□ -1.15
USP40-202ENST00000409945 C16orf71Q8IYS4 520 aaPredicted RBP7.84□□□□□ -1.15
USP40-202ENST00000409945 TAOK3Q9H2K8 898 aa7.84□□□□□ -1.15
USP40-202ENST00000409945 APOBEC2Q9Y235 224 aaKnown RBP7.84□□□□□ -1.15
USP40-202ENST00000409945 TNKSO95271 1327 aa7.84□□□□□ -1.15
USP40-202ENST00000409945 ANKRD36CQ5JPF3 1778 aa7.84□□□□□ -1.16
USP40-202ENST00000409945 A0A1W2PQJ5 194 aa7.84□□□□□ -1.16
USP40-202ENST00000409945 HGSO14964 777 aaPredicted RBP7.84□□□□□ -1.16
USP40-202ENST00000409945 NTSR2O95665 410 aa7.84□□□□□ -1.16
USP40-202ENST00000409945 PTPN1P18031 435 aaKnown RBP7.84□□□□□ -1.16
USP40-202ENST00000409945 SMAD3P84022 425 aaKnown RBP7.84□□□□□ -1.16
USP40-202ENST00000409945 SMAD2Q15796 467 aaKnown RBP7.84□□□□□ -1.16
USP40-202ENST00000409945 CATSPEREQ5SY80 951 aa7.84□□□□□ -1.16
USP40-202ENST00000409945 CCDC191Q8NCU4 936 aa7.84□□□□□ -1.16
USP40-202ENST00000409945 YIPF4Q9BSR8 244 aa7.84□□□□□ -1.16
USP40-202ENST00000409945 ZMAT4Q9H898 229 aa7.84□□□□□ -1.16
USP40-202ENST00000409945 TOPORSQ9NS56 1045 aaPredicted RBP7.84□□□□□ -1.16
USP40-202ENST00000409945 ASH2LQ9UBL3 628 aa7.84□□□□□ -1.16
USP40-202ENST00000409945 UBN2Q6ZU65 1347 aa7.83□□□□□ -1.16
USP40-202ENST00000409945 ALG1L2C9J202 215 aa7.83□□□□□ -1.16
USP40-202ENST00000409945 SLC6A11P48066 632 aa7.83□□□□□ -1.16
USP40-202ENST00000409945 GP2P55259 537 aaKnown RBP7.83□□□□□ -1.16
USP40-202ENST00000409945 EXOSC9Q06265 439 aaKnown RBP7.83□□□□□ -1.16
USP40-202ENST00000409945 MCL1Q07820 350 aa7.83□□□□□ -1.16
USP40-202ENST00000409945 TMEM132BQ14DG7 1078 aa7.83□□□□□ -1.16
USP40-202ENST00000409945 PDCD1Q15116 288 aa7.83□□□□□ -1.16
USP40-202ENST00000409945 FIGNQ5HY92 759 aa7.83□□□□□ -1.16
USP40-202ENST00000409945 SLC10A5Q5PT55 438 aa7.83□□□□□ -1.16
USP40-202ENST00000409945 KSR2Q6VAB6 950 aa7.83□□□□□ -1.16
USP40-202ENST00000409945 NECAB2Q7Z6G3 386 aa7.83□□□□□ -1.16
USP40-202ENST00000409945 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.83□□□□□ -1.16
USP40-202ENST00000409945 ABHD4Q8TB40 342 aa7.83□□□□□ -1.16
USP40-202ENST00000409945 DLG3Q92796 817 aa7.83□□□□□ -1.16
USP40-202ENST00000409945 CRAMP1Q96RY5 1269 aa7.83□□□□□ -1.16
USP40-202ENST00000409945 MYD88Q99836 296 aa7.83□□□□□ -1.16
USP40-202ENST00000409945 CWC25Q9NXE8 425 aaPredicted RBP7.83□□□□□ -1.16
USP40-202ENST00000409945 WASF3Q9UPY6 502 aa7.83□□□□□ -1.16
USP40-202ENST00000409945 YBX2Q9Y2T7 364 aaKnown RBP7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms