RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 INPP5FQ9Y2H2 1132 aa31.85■■■□□ 2.69
HMGB1-205ENST00000399494 EPCAMP16422 314 aa31.84■■■□□ 2.69
HMGB1-205ENST00000399494 KRT2P35908 639 aa31.84■■■□□ 2.69
HMGB1-205ENST00000399494 LETM2Q2VYF4 491 aa31.84■■■□□ 2.69
HMGB1-205ENST00000399494 ZNF280BQ86YH2 543 aa31.84■■■□□ 2.69
HMGB1-205ENST00000399494 FAM184AQ8NB25 1140 aa31.84■■■□□ 2.69
HMGB1-205ENST00000399494 FAM20AQ96MK3 541 aa31.84■■■□□ 2.69
HMGB1-205ENST00000399494 DZANK1Q9NVP4 752 aa31.84■■■□□ 2.69
HMGB1-205ENST00000399494 PCDHB2Q9Y5E7 798 aa31.84■■■□□ 2.69
HMGB1-205ENST00000399494 COL4A3BPQ9Y5P4 624 aa31.84■■■□□ 2.69
HMGB1-205ENST00000399494 CD2BP2O95400 341 aaKnown RBP31.83■■■□□ 2.69
HMGB1-205ENST00000399494 SLC11A1P49279 550 aa31.83■■■□□ 2.69
HMGB1-205ENST00000399494 RNASELQ05823 741 aaKnown RBP31.83■■■□□ 2.69
HMGB1-205ENST00000399494 AGMOQ6ZNB7 445 aa31.83■■■□□ 2.69
HMGB1-205ENST00000399494 MRPL10Q7Z7H8 261 aaKnown RBP31.83■■■□□ 2.69
HMGB1-205ENST00000399494 UBALD2Q8IYN6 164 aa31.83■■■□□ 2.69
HMGB1-205ENST00000399494 TMEM87AQ8NBN3 555 aa31.83■■■□□ 2.69
HMGB1-205ENST00000399494 PRPF31Q8WWY3 499 aaKnown RBP31.83■■■□□ 2.69
HMGB1-205ENST00000399494 PGBD4Q96DM1 585 aa31.83■■■□□ 2.69
HMGB1-205ENST00000399494 VN1R3Q9BXE9 311 aa31.83■■■□□ 2.69
HMGB1-205ENST00000399494 AGPAT5Q9NUQ2 364 aa31.83■■■□□ 2.69
HMGB1-205ENST00000399494 WRAP73Q9P2S5 460 aaPredicted RBP31.83■■■□□ 2.69
HMGB1-205ENST00000399494 B4GALT3O60512 393 aa31.82■■■□□ 2.68
HMGB1-205ENST00000399494 BRD1O95696 1058 aa31.82■■■□□ 2.68
HMGB1-205ENST00000399494 P4HBP07237 508 aaKnown RBP31.82■■■□□ 2.68
HMGB1-205ENST00000399494 ATAT1Q5SQI0 421 aa31.82■■■□□ 2.68
HMGB1-205ENST00000399494 PPP4R3AQ6IN85 833 aa31.82■■■□□ 2.68
HMGB1-205ENST00000399494 KIAA1841Q6NSI8 718 aa31.82■■■□□ 2.68
HMGB1-205ENST00000399494 OXER1Q8TDS5 423 aa31.82■■■□□ 2.68
HMGB1-205ENST00000399494 TMX3Q96JJ7 454 aa31.82■■■□□ 2.68
HMGB1-205ENST00000399494 GBP3Q9H0R5 595 aa31.82■■■□□ 2.68
HMGB1-205ENST00000399494 DHX33Q9H6R0 707 aaKnown RBP31.82■■■□□ 2.68
HMGB1-205ENST00000399494 MYO10Q9HD67 2058 aa31.82■■■□□ 2.68
HMGB1-205ENST00000399494 DKC1O60832 514 aaKnown RBP eCLIP31.81■■■□□ 2.68
HMGB1-205ENST00000399494 HOXA11P31270 313 aaPredicted RBP31.81■■■□□ 2.68
HMGB1-205ENST00000399494 MTMR3Q13615 1198 aa31.81■■■□□ 2.68
HMGB1-205ENST00000399494 SLC7A3Q8WY07 619 aa31.81■■■□□ 2.68
HMGB1-205ENST00000399494 C8orf76Q96K31 380 aa31.81■■■□□ 2.68
HMGB1-205ENST00000399494 CEP170P1Q96L14 293 aa31.81■■■□□ 2.68
HMGB1-205ENST00000399494 MINDY3Q9H8M7 445 aa31.81■■■□□ 2.68
HMGB1-205ENST00000399494 DDHD2O94830 711 aa31.8■■■□□ 2.68
HMGB1-205ENST00000399494 SRGAP2CP0DJJ0 459 aa31.8■■■□□ 2.68
HMGB1-205ENST00000399494 PIK3AP1Q6ZUJ8 805 aa31.8■■■□□ 2.68
HMGB1-205ENST00000399494 SRGAP1Q7Z6B7 1085 aa31.8■■■□□ 2.68
HMGB1-205ENST00000399494 EXOC8Q8IYI6 725 aa31.8■■■□□ 2.68
HMGB1-205ENST00000399494 ZDHHC14Q8IZN3 488 aa31.8■■■□□ 2.68
HMGB1-205ENST00000399494 HAS1Q92839 578 aa31.8■■■□□ 2.68
HMGB1-205ENST00000399494 TMEM143Q96AN5 459 aa31.8■■■□□ 2.68
HMGB1-205ENST00000399494 PPME1Q9Y570 386 aa31.8■■■□□ 2.68
HMGB1-205ENST00000399494 AFF1P51825 1210 aaKnown RBP31.79■■■□□ 2.68
HMGB1-205ENST00000399494 PTPN14Q15678 1187 aa31.79■■■□□ 2.68
HMGB1-205ENST00000399494 UBXN11Q5T124 520 aa31.79■■■□□ 2.68
HMGB1-205ENST00000399494 NEK8Q86SG6 692 aa31.79■■■□□ 2.68
HMGB1-205ENST00000399494 FEZF2Q8TBJ5 459 aa31.79■■■□□ 2.68
HMGB1-205ENST00000399494 LIMD1Q9UGP4 676 aa31.79■■■□□ 2.68
HMGB1-205ENST00000399494 GCFC2P16383 781 aaKnown RBP31.78■■■□□ 2.68
HMGB1-205ENST00000399494 NUBP1P53384 320 aa31.78■■■□□ 2.68
HMGB1-205ENST00000399494 GUCY1B3Q02153 619 aa31.78■■■□□ 2.68
HMGB1-205ENST00000399494 LAMTOR4Q0VGL1 99 aa31.78■■■□□ 2.68
HMGB1-205ENST00000399494 EPHA7Q15375 998 aa31.78■■■□□ 2.68
HMGB1-205ENST00000399494 SAFBQ15424 915 aaKnown RBP eCLIP31.78■■■□□ 2.68
HMGB1-205ENST00000399494 PPFIBP1Q86W92 1011 aa31.78■■■□□ 2.68
HMGB1-205ENST00000399494 C4orf19Q8IY42 314 aa31.78■■■□□ 2.68
HMGB1-205ENST00000399494 URGCPQ8TCY9 931 aa31.78■■■□□ 2.68
HMGB1-205ENST00000399494 PSPC1Q8WXF1 523 aaKnown RBP31.78■■■□□ 2.68
HMGB1-205ENST00000399494 SMOC2Q9H3U7 446 aa31.78■■■□□ 2.68
HMGB1-205ENST00000399494 FAM86C1Q9NVL1 165 aa31.78■■■□□ 2.68
HMGB1-205ENST00000399494 DBR1Q9UK59 544 aaKnown RBP31.78■■■□□ 2.68
HMGB1-205ENST00000399494 USTQ9Y2C2 406 aa31.78■■■□□ 2.68
HMGB1-205ENST00000399494 TBX3O15119 743 aa31.77■■■□□ 2.68
HMGB1-205ENST00000399494 LILRB3O75022 631 aa31.77■■■□□ 2.68
HMGB1-205ENST00000399494 ALDH2P05091 517 aa31.77■■■□□ 2.68
HMGB1-205ENST00000399494 ASGR2P07307 311 aa31.77■■■□□ 2.68
HMGB1-205ENST00000399494 RFC5P40937 340 aa31.77■■■□□ 2.68
HMGB1-205ENST00000399494 NR5A1Q13285 461 aa31.77■■■□□ 2.68
HMGB1-205ENST00000399494 CABP7Q86V35 215 aa31.77■■■□□ 2.68
HMGB1-205ENST00000399494 DIS3L2Q8IYB7 885 aaKnown RBP31.77■■■□□ 2.68
HMGB1-205ENST00000399494 PLCD3Q8N3E9 789 aa31.77■■■□□ 2.68
HMGB1-205ENST00000399494 KLHL5Q96PQ7 755 aa31.77■■■□□ 2.68
HMGB1-205ENST00000399494 IRF2BPLQ9H1B7 796 aa31.77■■■□□ 2.68
HMGB1-205ENST00000399494 RSAD1Q9HA92 442 aa31.77■■■□□ 2.68
HMGB1-205ENST00000399494 KANSL3Q9P2N6 904 aa31.77■■■□□ 2.68
HMGB1-205ENST00000399494 KIF3AQ9Y496 699 aa31.77■■■□□ 2.68
HMGB1-205ENST00000399494 USP34Q70CQ2 3546 aa31.76■■■□□ 2.67
HMGB1-205ENST00000399494 TMC5Q6UXY8 1006 aa31.76■■■□□ 2.67
HMGB1-205ENST00000399494 TDRD5Q8NAT2 981 aaKnown RBP31.76■■■□□ 2.67
HMGB1-205ENST00000399494 TMEM175Q9BSA9 504 aa31.76■■■□□ 2.67
HMGB1-205ENST00000399494 RGL1Q9NZL6 768 aa31.76■■■□□ 2.67
HMGB1-205ENST00000399494 STK39Q9UEW8 545 aa31.76■■■□□ 2.67
HMGB1-205ENST00000399494 FAN1Q9Y2M0 1017 aa31.76■■■□□ 2.67
HMGB1-205ENST00000399494 CNTNAP2Q9UHC6 1331 aa31.75■■■□□ 2.67
HMGB1-205ENST00000399494 ASAP2O43150 1006 aa31.75■■■□□ 2.67
HMGB1-205ENST00000399494 CCNT1O60563 726 aaKnown RBP31.75■■■□□ 2.67
HMGB1-205ENST00000399494 YWHABP31946 246 aaKnown RBP31.75■■■□□ 2.67
HMGB1-205ENST00000399494 OTUD6AQ7L8S5 288 aa31.75■■■□□ 2.67
HMGB1-205ENST00000399494 LXNQ9BS40 222 aa31.75■■■□□ 2.67
HMGB1-205ENST00000399494 BTBD18B2RXH4 712 aa31.74■■■□□ 2.67
HMGB1-205ENST00000399494 NRP1O14786 923 aa31.74■■■□□ 2.67
HMGB1-205ENST00000399494 ZBTB39O15060 712 aa31.74■■■□□ 2.67
HMGB1-205ENST00000399494 CNPP09543 421 aaKnown RBP31.74■■■□□ 2.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms