RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 ZKSCAN8Q15776 578 aaPredicted RBP19.91■□□□□ 0.78
CCDC3-201ENST00000378825 PPP1R18Q6NYC8 613 aa19.91■□□□□ 0.78
CCDC3-201ENST00000378825 SEPT14Q6ZU15 432 aa19.91■□□□□ 0.78
CCDC3-201ENST00000378825 SLF2Q8IX21 1173 aa19.91■□□□□ 0.78
CCDC3-201ENST00000378825 P3H4Q92791 437 aa19.91■□□□□ 0.78
CCDC3-201ENST00000378825 PCDHAC2Q9Y5I4 1007 aa19.91■□□□□ 0.78
CCDC3-201ENST00000378825 SMCHD1A6NHR9 2005 aa19.91■□□□□ 0.78
CCDC3-201ENST00000378825 KIF1CO43896 1103 aaKnown RBP19.91■□□□□ 0.78
CCDC3-201ENST00000378825 ACSL3O95573 720 aa19.91■□□□□ 0.78
CCDC3-201ENST00000378825 MYCNP04198 464 aaPredicted RBP19.91■□□□□ 0.78
CCDC3-201ENST00000378825 LMNB1P20700 586 aa19.91■□□□□ 0.78
CCDC3-201ENST00000378825 TNFAIP3P21580 790 aa19.91■□□□□ 0.78
CCDC3-201ENST00000378825 HOXA13P31271 388 aaPredicted RBP19.91■□□□□ 0.78
CCDC3-201ENST00000378825 SHMT1P34896 483 aa19.91■□□□□ 0.78
CCDC3-201ENST00000378825 CCDC137Q6PK04 289 aaKnown RBP19.91■□□□□ 0.78
CCDC3-201ENST00000378825 TACO1Q9BSH4 297 aaKnown RBP19.91■□□□□ 0.78
CCDC3-201ENST00000378825 STK33Q9BYT3 514 aa19.91■□□□□ 0.78
CCDC3-201ENST00000378825 METTL14Q9HCE5 456 aaKnown RBP19.91■□□□□ 0.78
CCDC3-201ENST00000378825 KCNQ5Q9NR82 932 aa19.91■□□□□ 0.78
CCDC3-201ENST00000378825 LY75O60449 1722 aa19.91■□□□□ 0.78
CCDC3-201ENST00000378825 THSD7AQ9UPZ6 1657 aa19.91■□□□□ 0.78
CCDC3-201ENST00000378825 TCP11X1B4DZS4 312 aa19.9■□□□□ 0.78
CCDC3-201ENST00000378825 SNX3O60493 162 aa19.9■□□□□ 0.78
CCDC3-201ENST00000378825 ITIH4Q14624 930 aa19.9■□□□□ 0.78
CCDC3-201ENST00000378825 MESDQ14696 234 aa19.9■□□□□ 0.78
CCDC3-201ENST00000378825 ANKRD42Q8N9B4 389 aa19.9■□□□□ 0.78
CCDC3-201ENST00000378825 CTTNBP2NLQ9P2B4 639 aa19.9■□□□□ 0.78
CCDC3-201ENST00000378825 IGF2BP3O00425 579 aaKnown RBP eCLIP19.9■□□□□ 0.78
CCDC3-201ENST00000378825 RASGRF2O14827 1237 aa19.9■□□□□ 0.78
CCDC3-201ENST00000378825 TBCAO75347 108 aaKnown RBP19.9■□□□□ 0.78
CCDC3-201ENST00000378825 NEBLO76041 1014 aa19.9■□□□□ 0.78
CCDC3-201ENST00000378825 PYGMP11217 842 aa19.9■□□□□ 0.78
CCDC3-201ENST00000378825 RPL13P26373 211 aaKnown RBP19.9■□□□□ 0.78
CCDC3-201ENST00000378825 NFIAQ12857 509 aa19.9■□□□□ 0.78
CCDC3-201ENST00000378825 TNIP1Q15025 636 aa19.9■□□□□ 0.78
CCDC3-201ENST00000378825 ZFPM1Q8IX07 1006 aa19.9■□□□□ 0.78
CCDC3-201ENST00000378825 GDAP1Q8TB36 358 aa19.9■□□□□ 0.78
CCDC3-201ENST00000378825 INTS2Q9H0H0 1204 aaKnown RBP19.9■□□□□ 0.78
CCDC3-201ENST00000378825 STK38LQ9Y2H1 464 aa19.9■□□□□ 0.78
CCDC3-201ENST00000378825 PFASO15067 1338 aa19.9■□□□□ 0.78
CCDC3-201ENST00000378825 TISP43B9A030 160 aa19.89■□□□□ 0.78
CCDC3-201ENST00000378825 CHMP2AO43633 222 aa19.89■□□□□ 0.78
CCDC3-201ENST00000378825 PHF2O75151 1096 aa19.89■□□□□ 0.78
CCDC3-201ENST00000378825 KRT16P08779 473 aa19.89■□□□□ 0.78
CCDC3-201ENST00000378825 MYCT1Q8N699 235 aa19.89■□□□□ 0.78
CCDC3-201ENST00000378825 ELMO3Q96BJ8 720 aa19.89■□□□□ 0.78
CCDC3-201ENST00000378825 PWWP2AQ96N64 755 aa19.89■□□□□ 0.78
CCDC3-201ENST00000378825 ECT2Q9H8V3 914 aa19.89■□□□□ 0.78
CCDC3-201ENST00000378825 CCDC189A1A4V9 331 aa19.89■□□□□ 0.77
CCDC3-201ENST00000378825 FAM187AA6NFU0 413 aa19.89■□□□□ 0.77
CCDC3-201ENST00000378825 FTLP02792 175 aaPredicted RBP19.89■□□□□ 0.77
CCDC3-201ENST00000378825 PDE6BP35913 854 aa19.89■□□□□ 0.77
CCDC3-201ENST00000378825 MPP2Q14168 576 aa19.89■□□□□ 0.77
CCDC3-201ENST00000378825 RINT1Q6NUQ1 792 aa19.89■□□□□ 0.77
CCDC3-201ENST00000378825 KAT5Q92993 513 aa19.89■□□□□ 0.77
CCDC3-201ENST00000378825 ZC3H12CQ9C0D7 883 aaKnown RBP19.89■□□□□ 0.77
CCDC3-201ENST00000378825 MSH4O15457 936 aa19.89■□□□□ 0.77
CCDC3-201ENST00000378825 RTN2O75298 545 aa19.89■□□□□ 0.77
CCDC3-201ENST00000378825 AGTP01019 485 aa19.89■□□□□ 0.77
CCDC3-201ENST00000378825 COMTP21964 271 aa19.89■□□□□ 0.77
CCDC3-201ENST00000378825 HOXA10P31260 410 aaPredicted RBP19.89■□□□□ 0.77
CCDC3-201ENST00000378825 DLG4P78352 724 aa19.89■□□□□ 0.77
CCDC3-201ENST00000378825 DHX34Q14147 1143 aaKnown RBP19.89■□□□□ 0.77
CCDC3-201ENST00000378825 MAEAQ7L5Y9 396 aa19.89■□□□□ 0.77
CCDC3-201ENST00000378825 SERPINB13Q9UIV8 391 aa19.89■□□□□ 0.77
CCDC3-201ENST00000378825 PLIN4Q96Q06 1357 aa19.88■□□□□ 0.77
CCDC3-201ENST00000378825 SLC16A3O15427 465 aaKnown RBP19.88■□□□□ 0.77
CCDC3-201ENST00000378825 NQO1P15559 274 aaKnown RBP19.88■□□□□ 0.77
CCDC3-201ENST00000378825 PSMC2P35998 433 aaKnown RBP19.88■□□□□ 0.77
CCDC3-201ENST00000378825 TCP10Q12799 353 aa19.88■□□□□ 0.77
CCDC3-201ENST00000378825 BMT2Q1RMZ1 405 aa19.88■□□□□ 0.77
CCDC3-201ENST00000378825 C6orf118Q5T5N4 469 aa19.88■□□□□ 0.77
CCDC3-201ENST00000378825 COL23A1Q86Y22 540 aaPredicted RBP19.88■□□□□ 0.77
CCDC3-201ENST00000378825 DYDC1Q8WWB3 177 aa19.88■□□□□ 0.77
CCDC3-201ENST00000378825 CRYGNQ8WXF5 182 aa19.88■□□□□ 0.77
CCDC3-201ENST00000378825 EBF2Q9HAK2 575 aa19.88■□□□□ 0.77
CCDC3-201ENST00000378825 RABGAP1Q9Y3P9 1069 aa19.88■□□□□ 0.77
CCDC3-201ENST00000378825 CYP3A7-CYP3A51PA0A087WV96 503 aa19.88■□□□□ 0.77
CCDC3-201ENST00000378825 TMEM120BA0PK00 339 aa19.88■□□□□ 0.77
CCDC3-201ENST00000378825 CYP3A7P24462 503 aa19.88■□□□□ 0.77
CCDC3-201ENST00000378825 ANXA13P27216 316 aa19.88■□□□□ 0.77
CCDC3-201ENST00000378825 NUGGCQ68CJ6 796 aa19.88■□□□□ 0.77
CCDC3-201ENST00000378825 CCDC105Q8IYK2 499 aa19.88■□□□□ 0.77
CCDC3-201ENST00000378825 SLFN12Q8IYM2 578 aa19.88■□□□□ 0.77
CCDC3-201ENST00000378825 HOOK2Q96ED9 719 aa19.88■□□□□ 0.77
CCDC3-201ENST00000378825 ZNF570Q96NI8 536 aa19.88■□□□□ 0.77
CCDC3-201ENST00000378825 EIF2AK1Q9BQI3 630 aaKnown RBP19.88■□□□□ 0.77
CCDC3-201ENST00000378825 FRMPD4Q14CM0 1322 aa19.87■□□□□ 0.77
CCDC3-201ENST00000378825 ANKRD62A6NC57 917 aa19.87■□□□□ 0.77
CCDC3-201ENST00000378825 TP73O15350 636 aa19.87■□□□□ 0.77
CCDC3-201ENST00000378825 DIAPH2O60879 1101 aa19.87■□□□□ 0.77
CCDC3-201ENST00000378825 ADCY2Q08462 1091 aa19.87■□□□□ 0.77
CCDC3-201ENST00000378825 PPP2R5AQ15172 486 aa19.87■□□□□ 0.77
CCDC3-201ENST00000378825 RMDN2Q96LZ7 410 aa19.87■□□□□ 0.77
CCDC3-201ENST00000378825 MBOAT7Q96N66 472 aa19.87■□□□□ 0.77
CCDC3-201ENST00000378825 APEX2Q9UBZ4 518 aa19.87■□□□□ 0.77
CCDC3-201ENST00000378825 C15orf41Q9Y2V0 281 aa19.87■□□□□ 0.77
CCDC3-201ENST00000378825 GTPBP10A4D1E9 387 aaKnown RBP19.87■□□□□ 0.77
CCDC3-201ENST00000378825 UPP2O95045 317 aa19.87■□□□□ 0.77
CCDC3-201ENST00000378825 GSTA1P08263 222 aa19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms