RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 HINFPQ9BQA5 517 aa11.27□□□□□ -0.61
RTN3-206ENST00000377819 DHX36Q9H2U1 1008 aaKnown RBP11.27□□□□□ -0.61
RTN3-206ENST00000377819 STN1Q9H668 368 aaKnown RBP11.27□□□□□ -0.61
RTN3-206ENST00000377819 NRBP1Q9UHY1 535 aa11.27□□□□□ -0.61
RTN3-206ENST00000377819 SPACA6W5XKT8 324 aa11.27□□□□□ -0.61
RTN3-206ENST00000377819 SETD1AO15047 1707 aaKnown RBP11.26□□□□□ -0.61
RTN3-206ENST00000377819 DENND3A2RUS2 1198 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 KIF28PB7ZC32 967 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 CTIFO43310 598 aaKnown RBP11.26□□□□□ -0.61
RTN3-206ENST00000377819 NDUFB5O43674 189 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 TYK2P29597 1187 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 SDC4P31431 198 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 ALCAMQ13740 583 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 SPDYAQ5MJ70 313 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 TTC23Q5W5X9 447 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 MOSPD2Q8NHP6 518 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 CABLES1Q8TDN4 633 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 UBE2TQ9NPD8 197 aaPredicted RBP11.26□□□□□ -0.61
RTN3-206ENST00000377819 MAD2L2Q9UI95 211 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 IQGAP1P46940 1657 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 NBPF26B4DH59 902 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 F8W810 466 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 CCDC22O60826 627 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 RHOBTB1O94844 696 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 NR1D1P20393 614 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 CSE1LP55060 971 aaKnown RBP11.26□□□□□ -0.61
RTN3-206ENST00000377819 NNTQ13423 1086 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 CDC37Q16543 378 aaPredicted RBP11.26□□□□□ -0.61
RTN3-206ENST00000377819 RHOT2Q8IXI1 618 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 SLC10A4Q96EP9 437 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 DHTKD1Q96HY7 919 aaPredicted RBP11.26□□□□□ -0.61
RTN3-206ENST00000377819 ELAC2Q9BQ52 826 aaKnown RBP11.26□□□□□ -0.61
RTN3-206ENST00000377819 SAYSD1Q9NPB0 183 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 MBD2Q9UBB5 411 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 MYO3AQ8NEV4 1616 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 PHLPP2Q6ZVD8 1323 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 RASA4BC9J798 803 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 LAD1O00515 517 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 RASA4O43374 803 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 KLHL18O94889 574 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 PFKFB1P16118 471 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 ANXA11P50995 505 aaKnown RBP11.26□□□□□ -0.61
RTN3-206ENST00000377819 CSTF3Q12996 717 aaKnown RBP11.26□□□□□ -0.61
RTN3-206ENST00000377819 ALFQ53S48 1182 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 PRUNE1Q86TP1 453 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 ASZ1Q8WWH4 475 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 SH3GL1Q99961 368 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 OXCT2Q9BYC2 517 aaPredicted RBP11.26□□□□□ -0.61
RTN3-206ENST00000377819 CLEC4MQ9H2X3 399 aaPredicted RBP11.26□□□□□ -0.61
RTN3-206ENST00000377819 MRGBPQ9NV56 204 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 LSM7Q9UK45 103 aaKnown RBP11.26□□□□□ -0.61
RTN3-206ENST00000377819 GTF2A1LQ9UNN4 478 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 EVPLLA8MZ36 301 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 CCDC188H7C350 402 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 ACSL3O95573 720 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 IGHDP01880 384 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 AKT1P31749 480 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 DR1Q01658 176 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 ESRP1Q6NXG1 681 aaKnown RBP11.26□□□□□ -0.61
RTN3-206ENST00000377819 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.26□□□□□ -0.61
RTN3-206ENST00000377819 TSEN34Q9BSV6 310 aaKnown RBP11.26□□□□□ -0.61
RTN3-206ENST00000377819 REXO4Q9GZR2 422 aaKnown RBP11.26□□□□□ -0.61
RTN3-206ENST00000377819 FAM135AQ9P2D6 1515 aa11.26□□□□□ -0.61
RTN3-206ENST00000377819 RPRD2Q5VT52 1461 aaKnown RBP11.25□□□□□ -0.61
RTN3-206ENST00000377819 LRRC14BA6NHZ5 514 aa11.25□□□□□ -0.61
RTN3-206ENST00000377819 TBC1D4O60343 1298 aa11.25□□□□□ -0.61
RTN3-206ENST00000377819 JAK1P23458 1154 aa11.25□□□□□ -0.61
RTN3-206ENST00000377819 NEK10Q6ZWH5 1172 aa11.25□□□□□ -0.61
RTN3-206ENST00000377819 THNSL1Q8IYQ7 743 aa11.25□□□□□ -0.61
RTN3-206ENST00000377819 TTC39CQ8N584 583 aa11.25□□□□□ -0.61
RTN3-206ENST00000377819 DPP10Q8N608 796 aa11.25□□□□□ -0.61
RTN3-206ENST00000377819 PPM1NQ8N819 430 aa11.25□□□□□ -0.61
RTN3-206ENST00000377819 HSPH1Q92598 858 aa11.25□□□□□ -0.61
RTN3-206ENST00000377819 ZNF496Q96IT1 587 aaPredicted RBP11.25□□□□□ -0.61
RTN3-206ENST00000377819 XPO6Q96QU8 1125 aaKnown RBP11.25□□□□□ -0.61
RTN3-206ENST00000377819 GCOM2Q9BZD3 368 aaPredicted RBP11.25□□□□□ -0.61
RTN3-206ENST00000377819 ZWILCHQ9H900 591 aa11.25□□□□□ -0.61
RTN3-206ENST00000377819 IARS2Q9NSE4 1012 aaKnown RBP11.25□□□□□ -0.61
RTN3-206ENST00000377819 ZFP69BQ9UJL9 534 aa11.25□□□□□ -0.61
RTN3-206ENST00000377819 PALD1Q9ULE6 856 aa11.25□□□□□ -0.61
RTN3-206ENST00000377819 HEY1Q9Y5J3 304 aa11.25□□□□□ -0.61
RTN3-206ENST00000377819 SLC30A1Q9Y6M5 507 aa11.25□□□□□ -0.61
RTN3-206ENST00000377819 FRMPD2Q68DX3 1309 aaPredicted RBP11.25□□□□□ -0.61
RTN3-206ENST00000377819 PSAPP07602 524 aa11.25□□□□□ -0.61
RTN3-206ENST00000377819 ICE2Q659A1 982 aa11.25□□□□□ -0.61
RTN3-206ENST00000377819 HEATR6Q6AI08 1181 aaKnown RBP11.25□□□□□ -0.61
RTN3-206ENST00000377819 AK8Q96MA6 479 aa11.25□□□□□ -0.61
RTN3-206ENST00000377819 CARD9Q9H257 536 aa11.25□□□□□ -0.61
RTN3-206ENST00000377819 EML4Q9HC35 981 aaKnown RBP11.25□□□□□ -0.61
RTN3-206ENST00000377819 ADAM22Q9P0K1 906 aa11.25□□□□□ -0.61
RTN3-206ENST00000377819 KDM5AP29375 1690 aaKnown RBP11.25□□□□□ -0.61
RTN3-206ENST00000377819 H3BMM5 538 aa11.25□□□□□ -0.61
RTN3-206ENST00000377819 RALAP11233 206 aa11.25□□□□□ -0.61
RTN3-206ENST00000377819 MLNP12872 115 aa11.25□□□□□ -0.61
RTN3-206ENST00000377819 IREB2P48200 963 aaKnown RBP11.25□□□□□ -0.61
RTN3-206ENST00000377819 PSMD7P51665 324 aa11.25□□□□□ -0.61
RTN3-206ENST00000377819 ARFIP2P53365 341 aa11.25□□□□□ -0.61
RTN3-206ENST00000377819 ATP12AP54707 1039 aa11.25□□□□□ -0.61
RTN3-206ENST00000377819 ANO4Q32M45 955 aa11.25□□□□□ -0.61
RTN3-206ENST00000377819 COBLL1Q53SF7 1204 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms