RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 MRPL10Q7Z7H8 261 aaKnown RBP16.15■□□□□ 0.18
PRPF40A-201ENST00000354363 FERMT3Q86UX7 667 aa16.15■□□□□ 0.18
PRPF40A-201ENST00000354363 ZNF280BQ86YH2 543 aa16.15■□□□□ 0.18
PRPF40A-201ENST00000354363 SLFN12Q8IYM2 578 aa16.15■□□□□ 0.18
PRPF40A-201ENST00000354363 TCP11Q8WWU5 503 aa16.15■□□□□ 0.18
PRPF40A-201ENST00000354363 GBP3Q9H0R5 595 aa16.15■□□□□ 0.18
PRPF40A-201ENST00000354363 ADAM7Q9H2U9 754 aa16.15■□□□□ 0.18
PRPF40A-201ENST00000354363 ZSWIM4Q9H7M6 989 aa16.15■□□□□ 0.18
PRPF40A-201ENST00000354363 ASAP2O43150 1006 aa16.14■□□□□ 0.17
PRPF40A-201ENST00000354363 BAG4O95429 457 aaKnown RBP16.14■□□□□ 0.17
PRPF40A-201ENST00000354363 LARGE1O95461 756 aa16.14■□□□□ 0.17
PRPF40A-201ENST00000354363 PTPN21Q16825 1174 aa16.14■□□□□ 0.17
PRPF40A-201ENST00000354363 UBXN11Q5T124 520 aa16.14■□□□□ 0.17
PRPF40A-201ENST00000354363 CES5AQ6NT32 575 aa16.14■□□□□ 0.17
PRPF40A-201ENST00000354363 NECAB1Q8N987 351 aa16.14■□□□□ 0.17
PRPF40A-201ENST00000354363 URGCPQ8TCY9 931 aa16.14■□□□□ 0.17
PRPF40A-201ENST00000354363 VN1R3Q9BXE9 311 aa16.14■□□□□ 0.17
PRPF40A-201ENST00000354363 POMKQ9H5K3 350 aa16.14■□□□□ 0.17
PRPF40A-201ENST00000354363 DDHD2O94830 711 aa16.13■□□□□ 0.17
PRPF40A-201ENST00000354363 SLITRK3O94933 977 aa16.13■□□□□ 0.17
PRPF40A-201ENST00000354363 AFF1P51825 1210 aaKnown RBP16.13■□□□□ 0.17
PRPF40A-201ENST00000354363 GIT2Q14161 759 aa16.13■□□□□ 0.17
PRPF40A-201ENST00000354363 ME3Q16798 604 aa16.13■□□□□ 0.17
PRPF40A-201ENST00000354363 TPH2Q8IWU9 490 aa16.13■□□□□ 0.17
PRPF40A-201ENST00000354363 RNF149Q8NC42 400 aa16.13■□□□□ 0.17
PRPF40A-201ENST00000354363 ASIC4Q96FT7 647 aa16.13■□□□□ 0.17
PRPF40A-201ENST00000354363 NECTIN4Q96NY8 510 aa16.13■□□□□ 0.17
PRPF40A-201ENST00000354363 MTRQ99707 1265 aa16.13■□□□□ 0.17
PRPF40A-201ENST00000354363 RSAD1Q9HA92 442 aa16.13■□□□□ 0.17
PRPF40A-201ENST00000354363 BRMS1Q9HCU9 246 aa16.13■□□□□ 0.17
PRPF40A-201ENST00000354363 XPNPEP1Q9NQW7 623 aa16.13■□□□□ 0.17
PRPF40A-201ENST00000354363 NR2E1Q9Y466 385 aa16.13■□□□□ 0.17
PRPF40A-201ENST00000354363 MTCL1Q9Y4B5 1905 aaKnown RBP16.13■□□□□ 0.17
PRPF40A-201ENST00000354363 PLXNA3P51805 1871 aa16.13■□□□□ 0.17
PRPF40A-201ENST00000354363 CNTNAP2Q9UHC6 1331 aa16.13■□□□□ 0.17
PRPF40A-201ENST00000354363 NEFLP07196 543 aa16.12■□□□□ 0.17
PRPF40A-201ENST00000354363 EPCAMP16422 314 aa16.12■□□□□ 0.17
PRPF40A-201ENST00000354363 RARS2Q5T160 578 aaKnown RBP16.12■□□□□ 0.17
PRPF40A-201ENST00000354363 SUGP1Q8IWZ8 645 aaKnown RBP16.12■□□□□ 0.17
PRPF40A-201ENST00000354363 FBXL6Q8N531 539 aa16.12■□□□□ 0.17
PRPF40A-201ENST00000354363 C12orf76Q8N812 135 aaPredicted RBP16.12■□□□□ 0.17
PRPF40A-201ENST00000354363 TMEM87AQ8NBN3 555 aa16.12■□□□□ 0.17
PRPF40A-201ENST00000354363 SLC22A17Q8WUG5 538 aa16.12■□□□□ 0.17
PRPF40A-201ENST00000354363 GTF3C6Q969F1 213 aa16.12■□□□□ 0.17
PRPF40A-201ENST00000354363 EIF2AK1Q9BQI3 630 aaKnown RBP16.12■□□□□ 0.17
PRPF40A-201ENST00000354363 TSHZ2Q9NRE2 1034 aa16.12■□□□□ 0.17
PRPF40A-201ENST00000354363 DZANK1Q9NVP4 752 aa16.12■□□□□ 0.17
PRPF40A-201ENST00000354363 C2CD4DB7Z1M9 353 aa16.12■□□□□ 0.17
PRPF40A-201ENST00000354363 WEE2P0C1S8 567 aa16.12■□□□□ 0.17
PRPF40A-201ENST00000354363 NCLP19338 710 aaKnown RBP16.12■□□□□ 0.17
PRPF40A-201ENST00000354363 MTHFRP42898 656 aa16.12■□□□□ 0.17
PRPF40A-201ENST00000354363 MRE11P49959 708 aa16.12■□□□□ 0.17
PRPF40A-201ENST00000354363 PTPN14Q15678 1187 aa16.12■□□□□ 0.17
PRPF40A-201ENST00000354363 IER5LQ5T953 404 aa16.12■□□□□ 0.17
PRPF40A-201ENST00000354363 KANK3Q6NY19 840 aa16.12■□□□□ 0.17
PRPF40A-201ENST00000354363 SMG8Q8ND04 991 aaKnown RBP16.12■□□□□ 0.17
PRPF40A-201ENST00000354363 NSUN7Q8NE18 718 aaKnown RBP16.12■□□□□ 0.17
PRPF40A-201ENST00000354363 PRSS33Q8NF86 280 aa16.12■□□□□ 0.17
PRPF40A-201ENST00000354363 RIPOR3Q96MK2 946 aa16.12■□□□□ 0.17
PRPF40A-201ENST00000354363 TMEM175Q9BSA9 504 aa16.12■□□□□ 0.17
PRPF40A-201ENST00000354363 KANSL3Q9P2N6 904 aa16.12■□□□□ 0.17
PRPF40A-201ENST00000354363 PCDHA12Q9UN75 941 aa16.12■□□□□ 0.17
PRPF40A-201ENST00000354363 WNT7AO00755 349 aa16.11■□□□□ 0.17
PRPF40A-201ENST00000354363 ERLIN2O94905 339 aa16.11■□□□□ 0.17
PRPF40A-201ENST00000354363 LYPLA2O95372 231 aa16.11■□□□□ 0.17
PRPF40A-201ENST00000354363 PTENP60484 403 aa16.11■□□□□ 0.17
PRPF40A-201ENST00000354363 MXD4Q14582 209 aaPredicted RBP16.11■□□□□ 0.17
PRPF40A-201ENST00000354363 CALCRLQ16602 461 aa16.11■□□□□ 0.17
PRPF40A-201ENST00000354363 KIAA1841Q6NSI8 718 aa16.11■□□□□ 0.17
PRPF40A-201ENST00000354363 ZBTB33Q86T24 672 aa16.11■□□□□ 0.17
PRPF40A-201ENST00000354363 FAM193BQ96PV7 902 aaPredicted RBP16.11■□□□□ 0.17
PRPF40A-201ENST00000354363 HSD17B14Q9BPX1 270 aa16.11■□□□□ 0.17
PRPF40A-201ENST00000354363 FAN1Q9Y2M0 1017 aa16.11■□□□□ 0.17
PRPF40A-201ENST00000354363 BTBD18B2RXH4 712 aa16.1■□□□□ 0.17
PRPF40A-201ENST00000354363 TSPAN1O60635 241 aa16.1■□□□□ 0.17
PRPF40A-201ENST00000354363 POMCP01189 267 aa16.1■□□□□ 0.17
PRPF40A-201ENST00000354363 ALDH2P05091 517 aa16.1■□□□□ 0.17
PRPF40A-201ENST00000354363 AXLP30530 894 aa16.1■□□□□ 0.17
PRPF40A-201ENST00000354363 IFNLR1Q8IU57 520 aaPredicted RBP16.1■□□□□ 0.17
PRPF40A-201ENST00000354363 CNNM3Q8NE01 707 aa16.1■□□□□ 0.17
PRPF40A-201ENST00000354363 CPB2Q96IY4 423 aa16.1■□□□□ 0.17
PRPF40A-201ENST00000354363 EIF2AQ9BY44 585 aaKnown RBP16.1■□□□□ 0.17
PRPF40A-201ENST00000354363 TTC12Q9H892 705 aaPredicted RBP16.1■□□□□ 0.17
PRPF40A-201ENST00000354363 ANKEF1Q9NU02 776 aa16.1■□□□□ 0.17
PRPF40A-201ENST00000354363 IPPQ9Y573 584 aa16.1■□□□□ 0.17
PRPF40A-201ENST00000354363 NRP1O14786 923 aa16.09■□□□□ 0.17
PRPF40A-201ENST00000354363 JAK2O60674 1132 aa16.09■□□□□ 0.17
PRPF40A-201ENST00000354363 DGAT1O75907 488 aa16.09■□□□□ 0.17
PRPF40A-201ENST00000354363 SSBP05455 408 aaKnown RBP eCLIP16.09■□□□□ 0.17
PRPF40A-201ENST00000354363 ITGA4P13612 1032 aa16.09■□□□□ 0.17
PRPF40A-201ENST00000354363 FOSBP53539 338 aa16.09■□□□□ 0.17
PRPF40A-201ENST00000354363 POU5F1BQ06416 359 aa16.09■□□□□ 0.17
PRPF40A-201ENST00000354363 PCBP1Q15365 356 aaKnown RBP eCLIP16.09■□□□□ 0.17
PRPF40A-201ENST00000354363 ATAT1Q5SQI0 421 aa16.09■□□□□ 0.17
PRPF40A-201ENST00000354363 NOTUMQ6P988 496 aa16.09■□□□□ 0.17
PRPF40A-201ENST00000354363 PPFIBP1Q86W92 1011 aa16.09■□□□□ 0.17
PRPF40A-201ENST00000354363 DIS3L2Q8IYB7 885 aaKnown RBP16.09■□□□□ 0.17
PRPF40A-201ENST00000354363 KREMEN2Q8NCW0 462 aa16.09■□□□□ 0.17
PRPF40A-201ENST00000354363 FEZF2Q8TBJ5 459 aa16.09■□□□□ 0.17
PRPF40A-201ENST00000354363 ASAP3Q8TDY4 903 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms