RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 SORBS3O60504 671 aa20.96■□□□□ 0.95
COL9A3-201ENST00000343916 KRT14P02533 472 aa20.96■□□□□ 0.95
COL9A3-201ENST00000343916 CCDC172P0C7W6 258 aa20.96■□□□□ 0.95
COL9A3-201ENST00000343916 ERVK-9P63128 1117 aa20.96■□□□□ 0.95
COL9A3-201ENST00000343916 SP4Q02446 784 aa20.96■□□□□ 0.95
COL9A3-201ENST00000343916 EPC2Q52LR7 807 aa20.96■□□□□ 0.95
COL9A3-201ENST00000343916 ELMO3Q96BJ8 720 aa20.96■□□□□ 0.95
COL9A3-201ENST00000343916 TMEM117Q9H0C3 514 aa20.96■□□□□ 0.95
COL9A3-201ENST00000343916 CHORDC1Q9UHD1 332 aaPredicted RBP20.96■□□□□ 0.95
COL9A3-201ENST00000343916 AMFRQ9UKV5 643 aa20.96■□□□□ 0.95
COL9A3-201ENST00000343916 COG5Q9UP83 839 aa20.96■□□□□ 0.95
COL9A3-201ENST00000343916 KRIT1O00522 736 aa20.96■□□□□ 0.95
COL9A3-201ENST00000343916 HSF2BPO75031 334 aa20.96■□□□□ 0.95
COL9A3-201ENST00000343916 NCKAP1LP55160 1127 aa20.96■□□□□ 0.95
COL9A3-201ENST00000343916 CETN1Q12798 172 aa20.96■□□□□ 0.95
COL9A3-201ENST00000343916 ZNF746Q6NUN9 644 aaPredicted RBP20.96■□□□□ 0.95
COL9A3-201ENST00000343916 DDX42Q86XP3 938 aaKnown RBP eCLIP20.96■□□□□ 0.95
COL9A3-201ENST00000343916 FAM76AQ8TAV0 307 aa20.96■□□□□ 0.95
COL9A3-201ENST00000343916 ARL8AQ96BM9 186 aa20.96■□□□□ 0.95
COL9A3-201ENST00000343916 CCDC127Q96BQ5 260 aa20.96■□□□□ 0.95
COL9A3-201ENST00000343916 RUFY1Q96T51 708 aa20.96■□□□□ 0.95
COL9A3-201ENST00000343916 POP1Q99575 1024 aaKnown RBP20.96■□□□□ 0.95
COL9A3-201ENST00000343916 AGPAT1Q99943 283 aa20.96■□□□□ 0.95
COL9A3-201ENST00000343916 SH3GL2Q99962 352 aa20.96■□□□□ 0.95
COL9A3-201ENST00000343916 NCANO14594 1321 aa20.95■□□□□ 0.94
COL9A3-201ENST00000343916 JAK3P52333 1124 aa20.95■□□□□ 0.94
COL9A3-201ENST00000343916 BACE1P56817 501 aa20.95■□□□□ 0.94
COL9A3-201ENST00000343916 MAP2K1Q02750 393 aaPredicted RBP20.95■□□□□ 0.94
COL9A3-201ENST00000343916 PPATQ06203 517 aa20.95■□□□□ 0.94
COL9A3-201ENST00000343916 SRLQ86TD4 932 aa20.95■□□□□ 0.94
COL9A3-201ENST00000343916 C12orf56Q8IXR9 622 aa20.95■□□□□ 0.94
COL9A3-201ENST00000343916 RRP15Q9Y3B9 282 aaKnown RBP20.95■□□□□ 0.94
COL9A3-201ENST00000343916 NR3C2P08235 984 aa20.95■□□□□ 0.94
COL9A3-201ENST00000343916 NPTX2P47972 431 aa20.95■□□□□ 0.94
COL9A3-201ENST00000343916 MXI1P50539 228 aa20.95■□□□□ 0.94
COL9A3-201ENST00000343916 HLTFQ14527 1009 aaKnown RBP eCLIP20.95■□□□□ 0.94
COL9A3-201ENST00000343916 DCAF12L1Q5VU92 463 aa20.95■□□□□ 0.94
COL9A3-201ENST00000343916 SNRNP48Q6IEG0 339 aaKnown RBP20.95■□□□□ 0.94
COL9A3-201ENST00000343916 BSNDQ8WZ55 320 aa20.95■□□□□ 0.94
COL9A3-201ENST00000343916 AMACRQ9UHK6 382 aa20.95■□□□□ 0.94
COL9A3-201ENST00000343916 CNOT7Q9UIV1 285 aaKnown RBP20.95■□□□□ 0.94
COL9A3-201ENST00000343916 HMGCS2P54868 508 aa20.94■□□□□ 0.94
COL9A3-201ENST00000343916 KRT76Q01546 638 aa20.94■□□□□ 0.94
COL9A3-201ENST00000343916 NNTQ13423 1086 aa20.94■□□□□ 0.94
COL9A3-201ENST00000343916 SNRNP35Q16560 246 aaKnown RBP20.94■□□□□ 0.94
COL9A3-201ENST00000343916 TTMPQ5BVD1 217 aa20.94■□□□□ 0.94
COL9A3-201ENST00000343916 NAA35Q5VZE5 725 aa20.94■□□□□ 0.94
COL9A3-201ENST00000343916 RASGEF1CQ8N431 466 aa20.94■□□□□ 0.94
COL9A3-201ENST00000343916 TMEM161BQ8NDZ6 487 aa20.94■□□□□ 0.94
COL9A3-201ENST00000343916 WRNIP1Q96S55 665 aa20.94■□□□□ 0.94
COL9A3-201ENST00000343916 RASSF4Q9H2L5 321 aa20.94■□□□□ 0.94
COL9A3-201ENST00000343916 TBX20Q9UMR3 447 aa20.94■□□□□ 0.94
COL9A3-201ENST00000343916 ANKRD62A6NC57 917 aa20.94■□□□□ 0.94
COL9A3-201ENST00000343916 SFNP31947 248 aa20.94■□□□□ 0.94
COL9A3-201ENST00000343916 DNAJC21Q5F1R6 531 aaKnown RBP20.94■□□□□ 0.94
COL9A3-201ENST00000343916 ALS2CLQ60I27 953 aa20.94■□□□□ 0.94
COL9A3-201ENST00000343916 ST6GALNAC4Q9H4F1 302 aa20.94■□□□□ 0.94
COL9A3-201ENST00000343916 GABBR1Q9UBS5 961 aa20.94■□□□□ 0.94
COL9A3-201ENST00000343916 NR2E1Q9Y466 385 aa20.94■□□□□ 0.94
COL9A3-201ENST00000343916 DENND3A2RUS2 1198 aa20.93■□□□□ 0.94
COL9A3-201ENST00000343916 ZNF862O60290 1169 aa20.93■□□□□ 0.94
COL9A3-201ENST00000343916 FGGP02679 453 aa20.93■□□□□ 0.94
COL9A3-201ENST00000343916 RFX1P22670 979 aa20.93■□□□□ 0.94
COL9A3-201ENST00000343916 CNGA1P29973 690 aa20.93■□□□□ 0.94
COL9A3-201ENST00000343916 PRPF4BQ13523 1007 aaKnown RBP20.93■□□□□ 0.94
COL9A3-201ENST00000343916 LRRC31Q6UY01 552 aa20.93■□□□□ 0.94
COL9A3-201ENST00000343916 ADAT2Q7Z6V5 191 aaKnown RBP20.93■□□□□ 0.94
COL9A3-201ENST00000343916 NLRX1Q86UT6 975 aa20.93■□□□□ 0.94
COL9A3-201ENST00000343916 VSIG10LQ86VR7 867 aa20.93■□□□□ 0.94
COL9A3-201ENST00000343916 RPUSD2Q8IZ73 545 aaKnown RBP20.93■□□□□ 0.94
COL9A3-201ENST00000343916 PPM1KQ8N3J5 372 aa20.93■□□□□ 0.94
COL9A3-201ENST00000343916 SEMA4DQ92854 862 aa20.93■□□□□ 0.94
COL9A3-201ENST00000343916 CALR3Q96L12 384 aaKnown RBP20.93■□□□□ 0.94
COL9A3-201ENST00000343916 MOV10L1Q9BXT6 1211 aaKnown RBP20.93■□□□□ 0.94
COL9A3-201ENST00000343916 TAF1DQ9H5J8 278 aaPredicted RBP20.93■□□□□ 0.94
COL9A3-201ENST00000343916 PCDHA10Q9Y5I2 948 aa20.93■□□□□ 0.94
COL9A3-201ENST00000343916 RGS20O76081 388 aa20.93■□□□□ 0.94
COL9A3-201ENST00000343916 FTLP02792 175 aaPredicted RBP20.93■□□□□ 0.94
COL9A3-201ENST00000343916 ECHS1P30084 290 aa20.93■□□□□ 0.94
COL9A3-201ENST00000343916 TGFB2P61812 414 aa20.93■□□□□ 0.94
COL9A3-201ENST00000343916 DMP1Q13316 513 aaPredicted RBP20.93■□□□□ 0.94
COL9A3-201ENST00000343916 KCTD16Q68DU8 428 aa20.93■□□□□ 0.94
COL9A3-201ENST00000343916 CEP170P1Q96L14 293 aa20.93■□□□□ 0.94
COL9A3-201ENST00000343916 TOPORSQ9NS56 1045 aaPredicted RBP20.93■□□□□ 0.94
COL9A3-201ENST00000343916 DDX3YO15523 660 aaKnown RBP20.92■□□□□ 0.94
COL9A3-201ENST00000343916 OPA1O60313 960 aa20.92■□□□□ 0.94
COL9A3-201ENST00000343916 SGPL1O95470 568 aa20.92■□□□□ 0.94
COL9A3-201ENST00000343916 R3HDM1Q15032 1099 aaKnown RBP20.92■□□□□ 0.94
COL9A3-201ENST00000343916 FMNL3Q8IVF7 1028 aa20.92■□□□□ 0.94
COL9A3-201ENST00000343916 SCYL3Q8IZE3 742 aa20.92■□□□□ 0.94
COL9A3-201ENST00000343916 IQCKQ8N0W5 287 aa20.92■□□□□ 0.94
COL9A3-201ENST00000343916 ZNF280CQ8ND82 737 aa20.92■□□□□ 0.94
COL9A3-201ENST00000343916 TMEM174Q8WUU8 243 aa20.92■□□□□ 0.94
COL9A3-201ENST00000343916 PIK3R5Q8WYR1 880 aa20.92■□□□□ 0.94
COL9A3-201ENST00000343916 CELF4Q9BZC1 486 aaKnown RBP20.92■□□□□ 0.94
COL9A3-201ENST00000343916 MTFR1LQ9H019 292 aa20.92■□□□□ 0.94
COL9A3-201ENST00000343916 ANKEF1Q9NU02 776 aa20.92■□□□□ 0.94
COL9A3-201ENST00000343916 ZNF233A6NK53 670 aa20.92■□□□□ 0.94
COL9A3-201ENST00000343916 P4HA2O15460 535 aa20.92■□□□□ 0.94
COL9A3-201ENST00000343916 PTPRAP18433 802 aa20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms