RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 SIAH1Q8IUQ4 282 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 TAB3Q8N5C8 712 aaPredicted RBP10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 RDM1Q8NG50 284 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 UPF1Q92900 1129 aaKnown RBP eCLIP10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 FERMT1Q9BQL6 677 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 PDE11AQ9HCR9 933 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 COX16Q9P0S2 106 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 CYP3A7-CYP3A51PA0A087WV96 503 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 CSDE1O75534 798 aaKnown RBP10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 STAM2O75886 525 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 CYP3A7P24462 503 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 PAK2Q13177 524 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 NFRKBQ6P4R8 1299 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 C4orf19Q8IY42 314 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 MRRFQ96E11 262 aaKnown RBP10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 AP1M1Q9BXS5 423 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 EDEM3Q9BZQ6 932 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 IGSF9BQ9UPX0 1349 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 EVI5O60447 810 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 FTLP02792 175 aaPredicted RBP10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 ALDH5A1P51649 535 aaPredicted RBP10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 GPC3P51654 580 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 EFNA5P52803 228 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 SLC7A5Q01650 507 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 KCTD17Q8N5Z5 321 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 HEXIM2Q96MH2 286 aaKnown RBP10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 C11orf70Q9BRQ4 267 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 MROH8Q9H579 483 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 OGFRQ9NZT2 677 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 APEX2Q9UBZ4 518 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 TAF1P21675 1872 aa10.01□□□□□ -0.81
TMEM39A-201ENST00000319172 XIRP1Q702N8 1843 aaKnown RBP10□□□□□ -0.81
TMEM39A-201ENST00000319172 CCDC66A2RUB6 948 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 ATP1A1P05023 1023 aaKnown RBP10□□□□□ -0.81
TMEM39A-201ENST00000319172 PTGER2P43116 358 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 OAZ1P54368 228 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 SURF1Q15526 300 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 EP400NLQ6ZTU2 488 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 FAM149B1Q96BN6 582 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 DNAJC19Q96DA6 116 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 PARD6BQ9BYG5 372 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 GPBP1L1Q9HC44 474 aaPredicted RBP10□□□□□ -0.81
TMEM39A-201ENST00000319172 ERAP1Q9NZ08 941 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 ATP2A1O14983 1001 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 SPATA31C1P0DKV0 1188 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 C10orf76Q5T2E6 689 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 CNOT8Q9UFF9 292 aaKnown RBP10□□□□□ -0.81
TMEM39A-201ENST00000319172 COMMD10Q9Y6G5 202 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 TISP43B9A030 160 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 FZD9O00144 591 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 ZSCAN20P17040 1043 aaPredicted RBP10□□□□□ -0.81
TMEM39A-201ENST00000319172 MXD4Q14582 209 aaPredicted RBP10□□□□□ -0.81
TMEM39A-201ENST00000319172 BRD3Q15059 726 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 KLHDC7AQ5VTJ3 777 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 SAMD3Q8N6K7 520 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 PRPF31Q8WWY3 499 aaKnown RBP10□□□□□ -0.81
TMEM39A-201ENST00000319172 MAGOHBQ96A72 148 aaKnown RBP10□□□□□ -0.81
TMEM39A-201ENST00000319172 POP1Q99575 1024 aaKnown RBP10□□□□□ -0.81
TMEM39A-201ENST00000319172 INTS13Q9NVM9 706 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 RAB20Q9NX57 234 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 ADAM22Q9P0K1 906 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 PTPN22Q9Y2R2 807 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 ATRNL1Q5VV63 1379 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 DAPK3O43293 454 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 HPDP32754 393 aaPredicted RBP10□□□□□ -0.81
TMEM39A-201ENST00000319172 SNX16P57768 344 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 EPC2Q52LR7 807 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 DNAJC24Q6P3W2 148 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 DNERQ8NFT8 737 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 TRAPPC12Q8WVT3 735 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 BBXQ8WY36 941 aaPredicted RBP10□□□□□ -0.81
TMEM39A-201ENST00000319172 MKNK1Q9BUB5 465 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 OLFML3Q9NRN5 406 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 COL20A1Q9P218 1284 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 IKBKGQ9Y6K9 419 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 DUOX1Q9NRD9 1551 aa10□□□□□ -0.81
TMEM39A-201ENST00000319172 NWD2Q9ULI1 1742 aa9.99□□□□□ -0.81
TMEM39A-201ENST00000319172 SIPA1L3O60292 1781 aaPredicted RBP9.99□□□□□ -0.81
TMEM39A-201ENST00000319172 GOLGA6BA6NDN3 693 aa9.99□□□□□ -0.81
TMEM39A-201ENST00000319172 XPOTO43592 962 aaKnown RBP9.99□□□□□ -0.81
TMEM39A-201ENST00000319172 USP2O75604 605 aaPredicted RBP9.99□□□□□ -0.81
TMEM39A-201ENST00000319172 RNF8O76064 485 aa9.99□□□□□ -0.81
TMEM39A-201ENST00000319172 KIAA0754O94854 1291 aa9.99□□□□□ -0.81
TMEM39A-201ENST00000319172 GUCY2CP25092 1073 aa9.99□□□□□ -0.81
TMEM39A-201ENST00000319172 MYO1EQ12965 1108 aa9.99□□□□□ -0.81
TMEM39A-201ENST00000319172 SNX1Q13596 522 aa9.99□□□□□ -0.81
TMEM39A-201ENST00000319172 DUOXA2Q1HG44 320 aa9.99□□□□□ -0.81
TMEM39A-201ENST00000319172 CCDC60Q8IWA6 550 aaPredicted RBP9.99□□□□□ -0.81
TMEM39A-201ENST00000319172 OR6B3Q8NGW1 331 aa9.99□□□□□ -0.81
TMEM39A-201ENST00000319172 UHMK1Q8TAS1 419 aaKnown RBP9.99□□□□□ -0.81
TMEM39A-201ENST00000319172 AFG1LQ8WV93 481 aa9.99□□□□□ -0.81
TMEM39A-201ENST00000319172 FAM81BQ96LP2 452 aa9.99□□□□□ -0.81
TMEM39A-201ENST00000319172 PGRMC1O00264 195 aaKnown RBP9.99□□□□□ -0.81
TMEM39A-201ENST00000319172 HBP1O60381 514 aa9.99□□□□□ -0.81
TMEM39A-201ENST00000319172 HEXIM1O94992 359 aaKnown RBP9.99□□□□□ -0.81
TMEM39A-201ENST00000319172 CTSHP09668 335 aa9.99□□□□□ -0.81
TMEM39A-201ENST00000319172 RFC5P40937 340 aa9.99□□□□□ -0.81
TMEM39A-201ENST00000319172 SLC18A3Q16572 532 aa9.99□□□□□ -0.81
TMEM39A-201ENST00000319172 WDR72Q3MJ13 1102 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms