RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 TMTC3Q6ZXV5 915 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 SRBD1Q8N5C6 995 aaKnown RBP8.31□□□□□ -1.08
SCN9A-201ENST00000303354 CCNYL1Q8N7R7 359 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 STRIP2Q9ULQ0 834 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 TIMM13Q9Y5L4 95 aaPredicted RBP8.31□□□□□ -1.08
SCN9A-201ENST00000303354 A8MX80 341 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 GH1P01241 217 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 PHEXP78562 749 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 ART3Q13508 389 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 MAP7Q14244 749 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 NBPF12Q5TAG4 269 aaPredicted RBP8.31□□□□□ -1.08
SCN9A-201ENST00000303354 LINC00301Q8NCQ3 95 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 SDCCAG3Q96C92 435 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 PABPC5Q96DU9 382 aaKnown RBP8.31□□□□□ -1.08
SCN9A-201ENST00000303354 SENP6Q9GZR1 1112 aaPredicted RBP8.31□□□□□ -1.08
SCN9A-201ENST00000303354 SNX24Q9Y343 169 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 FAM95CA0A1B0GW59 222 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 GSG1L2A8MUP6 293 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 PALMO75781 387 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 PDCD7Q8N8D1 485 aaKnown RBP8.31□□□□□ -1.08
SCN9A-201ENST00000303354 GPRC5AQ8NFJ5 357 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 KAT2BQ92831 832 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 JPH1Q9HDC5 661 aaPredicted RBP8.31□□□□□ -1.08
SCN9A-201ENST00000303354 KCNQ5Q9NR82 932 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 STK17AQ9UEE5 414 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 ATP7BP35670 1465 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 ZSCAN9O15535 394 aaPredicted RBP8.31□□□□□ -1.08
SCN9A-201ENST00000303354 KIZQ2M2Z5 673 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 SCYL3Q8IZE3 742 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 C1orf54Q8WWF1 131 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 NOVA2Q9UNW9 492 aaKnown RBP8.31□□□□□ -1.08
SCN9A-201ENST00000303354 ARHGEF37A1IGU5 675 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 MAP3K7O43318 606 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 NR3C1P04150 777 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 SERPING1P05155 500 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 WDR72Q3MJ13 1102 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 AK8Q96MA6 479 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 INTS2Q9H0H0 1204 aaKnown RBP8.31□□□□□ -1.08
SCN9A-201ENST00000303354 OSBPL5Q9H0X9 879 aaPredicted RBP8.31□□□□□ -1.08
SCN9A-201ENST00000303354 CAPN7Q9Y6W3 813 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 PTK2BQ14289 1009 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 ZNF235Q14590 738 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 PFKFB3Q16875 520 aaPredicted RBP8.31□□□□□ -1.08
SCN9A-201ENST00000303354 VMP1Q96GC9 406 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 SMYD3Q9H7B4 428 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 GPR108Q9NPR9 543 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 PBRM1Q86U86 1689 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 ARHGDIAP52565 204 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 ALKBH2Q6NS38 261 aa8.31□□□□□ -1.08
SCN9A-201ENST00000303354 GBA2Q9HCG7 927 aaPredicted RBP8.31□□□□□ -1.08
SCN9A-201ENST00000303354 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.31□□□□□ -1.08
SCN9A-201ENST00000303354 LAD1O00515 517 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 NDUFB5O43674 189 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 CYP2C9P11712 490 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 SYTL3Q4VX76 610 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 TTC23LQ6PF05 361 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 FOXR1Q6PIV2 292 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 SLC30A10Q6XR72 485 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 C1orf131Q8NDD1 294 aaKnown RBP8.3□□□□□ -1.08
SCN9A-201ENST00000303354 APPL2Q8NEU8 664 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 PIP4K2CQ8TBX8 421 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 VCXQ9H320 206 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 LY9Q9HBG7 655 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 INTS9Q9NV88 658 aaKnown RBP8.3□□□□□ -1.08
SCN9A-201ENST00000303354 JCADQ9P266 1359 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 ZMYM4Q5VZL5 1548 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.3□□□□□ -1.08
SCN9A-201ENST00000303354 EMSYQ7Z589 1322 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 ZNF286BP0CG31 522 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 PCP11498 1178 aaKnown RBP8.3□□□□□ -1.08
SCN9A-201ENST00000303354 PRAMEP78395 509 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 SURF1Q15526 300 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 RNF180Q86T96 592 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 CERS4Q9HA82 394 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 SCHIP1Q9P0W5 487 aaPredicted RBP8.3□□□□□ -1.08
SCN9A-201ENST00000303354 HSPA4LO95757 839 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 POMCP01189 267 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 GYS2P54840 703 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 DHX9Q08211 1270 aaKnown RBP8.3□□□□□ -1.08
SCN9A-201ENST00000303354 LRRC74AQ0VAA2 488 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 SDE2Q6IQ49 451 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 DHTKD1Q96HY7 919 aaPredicted RBP8.3□□□□□ -1.08
SCN9A-201ENST00000303354 MAGI2Q86UL8 1455 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 APOEP02649 317 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 EEF1B2P24534 225 aaKnown RBP8.3□□□□□ -1.08
SCN9A-201ENST00000303354 ALDH1A3P47895 512 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 KCNH2Q12809 1159 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 SGO1Q5FBB7 561 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 DDIASQ8IXT1 998 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 GOLPH3LQ9H4A5 285 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 SPATA31A1Q5TZJ5 1347 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 CASTOR2A6NHX0 329 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 NDUFB10O96000 172 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 TCF7P36402 384 aaPredicted RBP8.3□□□□□ -1.08
SCN9A-201ENST00000303354 SOX10P56693 466 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 TTC8Q8TAM2 541 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 NUP85Q9BW27 656 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 ASNSD1Q9NWL6 643 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 ERBB4Q15303 1308 aa8.3□□□□□ -1.08
SCN9A-201ENST00000303354 CLNS1AP54105 237 aaKnown RBP8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms