RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 KCNK3O14649 394 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 CDC40O60508 579 aaKnown RBP eCLIP6.82□□□□□ -1.32
VPS35-201ENST00000299138 PRDM1O75626 825 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 TCEA3O75764 348 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 PYGLP06737 847 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 MECOMQ03112 1051 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 EXOC3L4Q17RC7 722 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 RNF34Q969K3 372 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 PPP1R14BQ96C90 147 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 EFHD1Q9BUP0 239 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 TMEM60Q9H2L4 133 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 FIS1Q9Y3D6 152 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 PCDHB13Q9Y5F0 798 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 ITIH2P19823 946 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 DR1Q01658 176 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 AKIRIN2Q53H80 203 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 ERMARDQ5T6L9 678 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 PLEKHM3Q6ZWE6 761 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 ENOSF1Q7L5Y1 443 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 RAD54LQ92698 747 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 FAM20AQ96MK3 541 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 GINS4Q9BRT9 223 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 WNT8AQ9H1J5 351 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 SLC12A6Q9UHW9 1150 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 ZMYND8Q9ULU4 1186 aaPredicted RBP6.82□□□□□ -1.32
VPS35-201ENST00000299138 C15orf41Q9Y2V0 281 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 EIF3DO15371 548 aaKnown RBP eCLIP6.82□□□□□ -1.32
VPS35-201ENST00000299138 KLHL18O94889 574 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 CHGBP05060 677 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 C2orf54Q08AI8 447 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 FUT2Q10981 343 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 RASGRF1Q13972 1273 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 SCFD2Q8WU76 684 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 PLIN2Q99541 437 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 FAM207AQ9NSI2 230 aaPredicted RBP6.82□□□□□ -1.32
VPS35-201ENST00000299138 SUGT1Q9Y2Z0 365 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 REXO2Q9Y3B8 237 aaKnown RBP6.82□□□□□ -1.32
VPS35-201ENST00000299138 FAM205AQ6ZU69 1335 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 AGPSO00116 658 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 ENC1O14682 589 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 ADCY3O60266 1144 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 TNFAIP3P21580 790 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 CTDSPL2Q05D32 466 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 ASPHQ12797 758 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 TJAP1Q5JTD0 557 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 NANOGNBQ7Z5D8 188 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 ERP44Q9BS26 406 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 ING2Q9H160 280 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 SSU72Q9NP77 194 aaKnown RBP6.82□□□□□ -1.32
VPS35-201ENST00000299138 STX18Q9P2W9 335 aaKnown RBP6.82□□□□□ -1.32
VPS35-201ENST00000299138 EXOC7Q9UPT5 735 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 TTLL1O95922 423 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 MMEP08473 750 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 MYBL1P10243 752 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 GZMAP12544 262 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 PHKA1P46020 1223 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 SCTRP47872 440 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 SERPINB4P48594 390 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 RAB15P59190 212 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 CUL3Q13618 768 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 SLC15A2Q16348 729 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 GSTA3Q16772 222 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 KAZNQ674X7 775 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 WDR59Q6PJI9 974 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 SLC30A9Q6PML9 568 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 LVRNQ6Q4G3 990 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 TRPM8Q7Z2W7 1104 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 VGLL2Q8N8G2 317 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 NEDD1Q8NHV4 660 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 TRAPPC9Q96Q05 1148 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 LACRTQ9GZZ8 138 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 NEUROG2Q9H2A3 272 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 SMYD2Q9NRG4 433 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 TRAF3IP3Q9Y228 551 aa6.82□□□□□ -1.32
VPS35-201ENST00000299138 MYBP10242 640 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 CD44P16070 742 aaKnown RBP6.81□□□□□ -1.32
VPS35-201ENST00000299138 RPL26P61254 145 aaKnown RBP6.81□□□□□ -1.32
VPS35-201ENST00000299138 ACVR2BQ13705 512 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 ZNF34Q8IZ26 560 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 LARGE2Q8N3Y3 721 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 ZKSCAN4Q969J2 545 aaPredicted RBP6.81□□□□□ -1.32
VPS35-201ENST00000299138 CHP1Q99653 195 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 KIF9Q9HAQ2 790 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 TMEM59LQ9UK28 342 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 GDAQ9Y2T3 454 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 CD2APQ9Y5K6 639 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 SNX5Q9Y5X3 404 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 DUOX1Q9NRD9 1551 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 KIAA0391O15091 583 aaKnown RBP6.81□□□□□ -1.32
VPS35-201ENST00000299138 MAPK13O15264 365 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 LZTS3O60299 673 aaPredicted RBP6.81□□□□□ -1.32
VPS35-201ENST00000299138 SLC1A1P43005 524 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 MMP13P45452 471 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 PTPROQ16827 1216 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 PPHLN1Q8NEY8 458 aaKnown RBP6.81□□□□□ -1.32
VPS35-201ENST00000299138 CNKSR1Q969H4 720 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 TLCD1Q96CP7 247 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 TUBGCP3Q96CW5 907 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 TMEM237Q96Q45 408 aa6.81□□□□□ -1.32
VPS35-201ENST00000299138 LSM14BQ9BX40 385 aaKnown RBP6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms