RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 TRAF7Q6Q0C0 670 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 ADCK1Q86TW2 530 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 TMEM206Q9H813 350 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 KRT37O76014 449 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 IGDCC4Q8TDY8 1250 aa10.5□□□□□ -0.73
COL6A3-201ENST00000295550 FOXN1O15353 648 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 TEX33O43247 280 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 RSRC2Q7L4I2 434 aaKnown RBP10.49□□□□□ -0.73
COL6A3-201ENST00000295550 SPATA17Q96L03 361 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 CHCHD3Q9NX63 227 aaKnown RBP10.49□□□□□ -0.73
COL6A3-201ENST00000295550 COASYQ13057 564 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 NAA30Q147X3 362 aaPredicted RBP10.49□□□□□ -0.73
COL6A3-201ENST00000295550 FAM161BQ96MY7 647 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 COPEO14579 308 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 NBNO60934 754 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 ATXN8OSP0DMR3 200 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 CASP1P29466 404 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 CYP2C19P33261 490 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 SNX19Q92543 992 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 TTC17Q96AE7 1141 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 EHD2Q9NZN4 543 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 MYH1P12882 1939 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 MYH2Q9UKX2 1941 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 MYH4Q9Y623 1939 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 TESPA1A2RU30 521 aaPredicted RBP10.49□□□□□ -0.73
COL6A3-201ENST00000295550 GOLGA8SH3BPF8 625 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 PRPSAP2O60256 369 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 TTC26A0AVF1 554 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 H0Y626 953 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 PJA2O43164 708 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 TRIM16O95361 564 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 GRAPQ13588 217 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 USP17L2Q6R6M4 530 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 GRAPLQ8TC17 118 aaPredicted RBP10.49□□□□□ -0.73
COL6A3-201ENST00000295550 FAM95CA0A1B0GW59 222 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 ZBED1O96006 694 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 FMR1Q06787 632 aaKnown RBP eCLIP10.49□□□□□ -0.73
COL6A3-201ENST00000295550 KRT39Q6A163 491 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 SH3RF3Q8TEJ3 882 aaPredicted RBP10.49□□□□□ -0.73
COL6A3-201ENST00000295550 PXDNQ92626 1479 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 FUCA2Q9BTY2 467 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 HDAC6Q9UBN7 1215 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 DCTN4Q9UJW0 460 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 NMT2O60551 498 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 FDPSP14324 419 aaKnown RBP10.49□□□□□ -0.73
COL6A3-201ENST00000295550 VCAM1P19320 739 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 CEP78Q5JTW2 689 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 RHOT2Q8IXI1 618 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 GUCY1A2P33402 732 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 PLEKHM3Q6ZWE6 761 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 ASCC2Q9H1I8 757 aaPredicted RBP10.49□□□□□ -0.73
COL6A3-201ENST00000295550 ADNPQ9H2P0 1102 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 HPS5Q9UPZ3 1129 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 ZBTB5O15062 677 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 BLVRAP53004 296 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 SYDE2Q5VT97 1194 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 BBS5Q8N3I7 341 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 STAMBPL1Q96FJ0 436 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 ZNF577Q9BSK1 485 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 SAYSD1Q9NPB0 183 aa10.49□□□□□ -0.73
COL6A3-201ENST00000295550 USP17L5A8MUK1 530 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 OCM2P0CE71 109 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 OCMP0CE72 109 aaPredicted RBP10.48□□□□□ -0.73
COL6A3-201ENST00000295550 NFRKBQ6P4R8 1299 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 BBOX1O75936 387 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 PPP2R2AP63151 447 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 PDIA6Q15084 440 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 NLRP14Q86W24 1093 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 EPAS1Q99814 870 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 INPP5FQ9Y2H2 1132 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 SLIT3O75094 1523 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 ARL4CP56559 192 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 GFPT1Q06210 699 aaPredicted RBP10.48□□□□□ -0.73
COL6A3-201ENST00000295550 TRIM8Q9BZR9 551 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 CYP19A1P11511 503 aaPredicted RBP10.48□□□□□ -0.73
COL6A3-201ENST00000295550 CUL3Q13618 768 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 EFTUD2Q15029 972 aaKnown RBP eCLIP10.48□□□□□ -0.73
COL6A3-201ENST00000295550 ACBD5Q5T8D3 534 aaPredicted RBP10.48□□□□□ -0.73
COL6A3-201ENST00000295550 FAM47EQ6ZV65 393 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 STX19Q8N4C7 294 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 COG1Q8WTW3 980 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 ENO4A6NNW6 628 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 MED7O43513 233 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 TMCC1O94876 653 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 DLGAP5Q15398 846 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 BRINP3Q76B58 766 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 L2HGDHQ9H9P8 463 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 MLXIPLQ9NP71 852 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 GTSE1Q9NYZ3 720 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 TLR3O15455 904 aaKnown RBP10.48□□□□□ -0.73
COL6A3-201ENST00000295550 SCARF1Q14162 830 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 MRPL47Q9HD33 250 aaKnown RBP10.48□□□□□ -0.73
COL6A3-201ENST00000295550 DNAJC17Q9NVM6 304 aaKnown RBP10.48□□□□□ -0.73
COL6A3-201ENST00000295550 GID8Q9NWU2 228 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 ADD3Q9UEY8 706 aaKnown RBP10.48□□□□□ -0.73
COL6A3-201ENST00000295550 NR3C1P04150 777 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 CYP2D6P10635 497 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 BZW1Q7L1Q6 419 aaKnown RBP10.48□□□□□ -0.73
COL6A3-201ENST00000295550 TMEM47Q9BQJ4 181 aa10.48□□□□□ -0.73
COL6A3-201ENST00000295550 SNX25Q9H3E2 840 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms