RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Rhox12Q4TU81 186 aa16.58■□□□□ 0.25
Ccdc88b-201ENSMUST00000113440 Q8BWG4 1187 aa16.58■□□□□ 0.25
Ccdc88b-201ENSMUST00000113440 Cep57Q8CEE0 500 aa16.58■□□□□ 0.25
Ccdc88b-201ENSMUST00000113440 Cdc26Q99JP4 85 aa16.58■□□□□ 0.25
Ccdc88b-201ENSMUST00000113440 Abcf2Q99LE6 628 aaKnown RBP16.58■□□□□ 0.25
Ccdc88b-201ENSMUST00000113440 Bcs1lQ9CZP5 418 aa16.58■□□□□ 0.25
Ccdc88b-201ENSMUST00000113440 Atp6v1e2Q9D593 226 aa16.58■□□□□ 0.25
Ccdc88b-201ENSMUST00000113440 IydQ9DCX8 285 aa16.58■□□□□ 0.25
Ccdc88b-201ENSMUST00000113440 Orc3Q9JK30 715 aaKnown RBP16.58■□□□□ 0.25
Ccdc88b-201ENSMUST00000113440 Usp21Q9QZL6 566 aa16.58■□□□□ 0.25
Ccdc88b-201ENSMUST00000113440 Slc26a4Q9R155 780 aa16.58■□□□□ 0.25
Ccdc88b-201ENSMUST00000113440 Zfp94E9Q6Y4 486 aa16.58■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Kif5aP33175 1027 aa16.58■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Hcls1P49710 486 aaKnown RBP16.58■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Skap1Q3UUV5 355 aa16.58■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Pacsin1Q61644 441 aa16.58■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Zcwpw1Q6IR42 630 aa16.58■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Skiv2lQ6NZR5 1244 aa16.58■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Uba6Q8C7R4 1053 aa16.58■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 GanQ8CA72 597 aa16.58■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Ppp1r11Q8K1L5 131 aa16.58■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Hspbp1Q99P31 357 aaKnown RBP16.58■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 BcamQ9R069 622 aa16.58■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 LnpkQ7TQ95 425 aa16.58■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Fnbp1Q80TY0 616 aa16.58■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Arhgap42B2RQE8 841 aa16.58■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Reep2Q8VCD6 254 aa16.58■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Snx10Q9CWT3 201 aa16.58■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 ErmapQ9JLN5 566 aa16.58■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Mtmr9Q9Z2D0 545 aa16.58■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Gm28036V9GXJ1 658 aa16.58■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Mon2Q80TL7 1715 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 C5P06684 1680 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 DtnbO70585 659 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Nub1P54729 614 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Syne3Q4FZC9 975 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Zbtb8osQ505B7 168 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Ezh2Q61188 746 aaKnown RBP16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Ush1gQ80T11 461 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Champ1Q8K327 802 aaKnown RBP16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Slc40a1Q9JHI9 570 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Ifi202Q9R002 445 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Pstpip1P97814 415 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Stx2Q00262 289 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Acot5Q6Q2Z6 421 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Rmdn1Q9DCV4 305 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Cdc42ep4Q9JM96 349 aaKnown RBP16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Magea6O89010 325 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Kcnma1Q08460 1209 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Cnga4Q3UW12 575 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Fbxo41Q6NS60 873 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Magea3Q6T340 320 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Ipo5Q8BKC5 1097 aaKnown RBP16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Xab2Q9DCD2 855 aaKnown RBP16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Slc13a1Q9JHI4 594 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Cacna2d1O08532 1103 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Psmc6P62334 389 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Upf3bQ3ULL6 472 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Gprin1Q3UNH4 932 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Sh3gl3Q62421 347 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Ankrd6Q69ZU8 712 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Znf12Q7TSI0 686 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Q8C1R3 189 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 4933409G03RikQ8C5U0 320 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Setd3Q91WC0 594 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Trim42Q9D2H5 723 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Inpp4aQ9EPW0 939 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Kcnh7Q9ER47 1195 aa16.57■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Atp8b5A3FIN4 1183 aa16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Per2O54943 1257 aa16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 LxnP70202 222 aa16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Yipf3Q3UDR8 347 aa16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Ago4Q8CJF8 861 aa16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Ints9Q8K114 658 aaKnown RBP16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Kremen1Q99N43 473 aa16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Osbpl9A2A8Z1 736 aa16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Plekha5E9Q6H8 1269 aa16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Gm21962L7N280 338 aa16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 AurkbO70126 345 aa16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Xirp1O70373 1129 aa16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Cog7Q3UM29 770 aa16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Ago2Q8CJG0 860 aaKnown RBP16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Castor1Q9CWQ8 331 aa16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Pcsk1nQ9QXV0 258 aa16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Zranb2Q9R020 330 aaKnown RBP16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Nfx1B1AY10 1114 aaKnown RBP16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Avpr1aQ62463 423 aa16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Papd7Q6PB75 542 aa16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 SrlQ7TQ48 910 aa16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Impg2Q80XH2 1243 aa16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Setdb2Q8C267 713 aa16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Usp27Q8CEG8 438 aa16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Taco1Q8K0Z7 294 aaKnown RBP16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Uap1Q91YN5 522 aa16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 CacybpQ9CXW3 229 aa16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Krt17Q9QWL7 433 aa16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Mt-CybP00158 381 aa16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Atp13a4Q5XF90 1193 aa16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Thap3Q8BJ25 218 aa16.56■□□□□ 0.24
Ccdc88b-201ENSMUST00000113440 Syne4Q8CII8 388 aa16.56■□□□□ 0.24
Retrieved 100 of 22,080 RNA–protein pairs in 15.1 ms