Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Gm25239-201ENSMUST00000174915 86 ntBASIC45.7■■■■■ 4.91
Syne4Q8CII8 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC42.44■■■■■ 4.38
Syne4Q8CII8 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC41.84■■■■■ 4.29
Syne4Q8CII8 Gm24109-201ENSMUST00000175489 103 ntBASIC39.78■■■■□ 3.96
Syne4Q8CII8 Gm15042-201ENSMUST00000120212 883 ntBASIC39.55■■■■□ 3.92
Syne4Q8CII8 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC38.61■■■■□ 3.77
Syne4Q8CII8 Gm15045-201ENSMUST00000117359 883 ntBASIC38.6■■■■□ 3.77
Syne4Q8CII8 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC38.57■■■■□ 3.76
Syne4Q8CII8 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC38.55■■■■□ 3.76
Syne4Q8CII8 Gm23366-201ENSMUST00000175022 89 ntBASIC38.12■■■■□ 3.69
Syne4Q8CII8 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC37.93■■■■□ 3.66
Syne4Q8CII8 AC153911.1-202ENSMUST00000218534 1034 ntBASIC37.27■■■■□ 3.56
Syne4Q8CII8 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC37.08■■■■□ 3.53
Syne4Q8CII8 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC36.98■■■■□ 3.51
Syne4Q8CII8 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC36.91■■■■□ 3.5
Syne4Q8CII8 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC36.9■■■■□ 3.5
Syne4Q8CII8 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC36.78■■■■□ 3.48
Syne4Q8CII8 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC36.72■■■■□ 3.47
Syne4Q8CII8 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC36.64■■■■□ 3.46
Syne4Q8CII8 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC36.57■■■■□ 3.44
Syne4Q8CII8 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC36.36■■■■□ 3.41
Syne4Q8CII8 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC36.24■■■■□ 3.39
Syne4Q8CII8 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC36.24■■■■□ 3.39
Syne4Q8CII8 Gm25238-201ENSMUST00000174914 89 ntBASIC36.21■■■■□ 3.39
Syne4Q8CII8 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC36.03■■■■□ 3.36
Syne4Q8CII8 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC35.96■■■■□ 3.35
Syne4Q8CII8 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC35.79■■■■□ 3.32
Syne4Q8CII8 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC35.69■■■■□ 3.3
Syne4Q8CII8 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC35.58■■■■□ 3.29
Syne4Q8CII8 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC35.55■■■■□ 3.28
Syne4Q8CII8 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC35.45■■■■□ 3.27
Syne4Q8CII8 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC35.39■■■■□ 3.26
Syne4Q8CII8 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC35.33■■■■□ 3.25
Syne4Q8CII8 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC35.31■■■■□ 3.24
Syne4Q8CII8 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC35.12■■■■□ 3.21
Syne4Q8CII8 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC35.06■■■■□ 3.2
Syne4Q8CII8 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC35.05■■■■□ 3.2
Syne4Q8CII8 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC34.99■■■■□ 3.19
Syne4Q8CII8 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
Syne4Q8CII8 Gm25262-201ENSMUST00000174934 133 ntBASIC34.89■■■■□ 3.18
Syne4Q8CII8 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC34.75■■■■□ 3.15
Syne4Q8CII8 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC34.7■■■■□ 3.15
Syne4Q8CII8 Gm27325-201ENSMUST00000175467 74 ntBASIC34.6■■■■□ 3.13
Syne4Q8CII8 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC34.55■■■■□ 3.12
Syne4Q8CII8 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC34.46■■■■□ 3.11
Syne4Q8CII8 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC34.37■■■■□ 3.09
Syne4Q8CII8 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC34.34■■■■□ 3.09
Syne4Q8CII8 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC34.29■■■■□ 3.08
Syne4Q8CII8 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC34.27■■■■□ 3.08
Syne4Q8CII8 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC34.25■■■■□ 3.07
Syne4Q8CII8 Rab21-202ENSMUST00000218831 843 ntBASIC34.22■■■■□ 3.07
Syne4Q8CII8 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC34.19■■■■□ 3.06
Syne4Q8CII8 Gm26115-201ENSMUST00000175605 87 ntBASIC34.18■■■■□ 3.06
Syne4Q8CII8 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC34.18■■■■□ 3.06
Syne4Q8CII8 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC34.06■■■■□ 3.04
Syne4Q8CII8 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC34.03■■■■□ 3.04
Syne4Q8CII8 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC34.02■■■■□ 3.04
Syne4Q8CII8 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC33.93■■■■□ 3.02
Syne4Q8CII8 Gm8109-201ENSMUST00000194076 746 ntBASIC33.93■■■■□ 3.02
Syne4Q8CII8 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC33.91■■■■□ 3.02
Syne4Q8CII8 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC33.85■■■■□ 3.01
Syne4Q8CII8 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC33.85■■■■□ 3.01
Syne4Q8CII8 Psd-208ENSMUST00000224556 2034 ntBASIC33.85■■■■□ 3.01
Syne4Q8CII8 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC33.82■■■■□ 3
Syne4Q8CII8 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC33.79■■■■□ 3
Syne4Q8CII8 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC33.75■■■□□ 2.99
Syne4Q8CII8 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC33.61■■■□□ 2.97
Syne4Q8CII8 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC33.53■■■□□ 2.96
Syne4Q8CII8 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC33.52■■■□□ 2.96
Syne4Q8CII8 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
Syne4Q8CII8 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC33.48■■■□□ 2.95
Syne4Q8CII8 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC33.45■■■□□ 2.94
Syne4Q8CII8 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC33.43■■■□□ 2.94
Syne4Q8CII8 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC33.33■■■□□ 2.93
Syne4Q8CII8 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC33.31■■■□□ 2.92
Syne4Q8CII8 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC33.29■■■□□ 2.92
Syne4Q8CII8 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC33.28■■■□□ 2.92
Syne4Q8CII8 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC33.26■■■□□ 2.91
Syne4Q8CII8 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC33.26■■■□□ 2.91
Syne4Q8CII8 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
Syne4Q8CII8 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC33.17■■■□□ 2.9
Syne4Q8CII8 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
Syne4Q8CII8 Gm17082-201ENSMUST00000166043 1091 ntBASIC33.06■■■□□ 2.88
Syne4Q8CII8 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC33.02■■■□□ 2.88
Syne4Q8CII8 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC33■■■□□ 2.87
Syne4Q8CII8 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC32.97■■■□□ 2.87
Syne4Q8CII8 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC32.96■■■□□ 2.87
Syne4Q8CII8 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC32.94■■■□□ 2.86
Syne4Q8CII8 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC32.87■■■□□ 2.85
Syne4Q8CII8 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC32.86■■■□□ 2.85
Syne4Q8CII8 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC32.84■■■□□ 2.85
Syne4Q8CII8 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC32.84■■■□□ 2.85
Syne4Q8CII8 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC32.84■■■□□ 2.85
Syne4Q8CII8 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
Syne4Q8CII8 Gm27322-201ENSMUST00000184007 104 ntBASIC32.81■■■□□ 2.84
Syne4Q8CII8 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
Syne4Q8CII8 Gm24804-201ENSMUST00000174982 85 ntBASIC32.79■■■□□ 2.84
Syne4Q8CII8 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC32.69■■■□□ 2.82
Syne4Q8CII8 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC32.68■■■□□ 2.82
Syne4Q8CII8 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC32.66■■■□□ 2.82
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms