RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRP42	YDR235W	TFC7	Q12415	435 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	ERP4	Q12450	207 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	MRX4	Q12467	430 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	SFG1	Q12507	346 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	RGS2	Q99188	309 aa		0.46	□□□□□ -2.34
PRP42	YDR235W	TDH2	P00358	332 aa	Known RBP	0.45	□□□□□ -2.34
PRP42	YDR235W	TDH3	P00359	332 aa	Known RBP RIP-Chip data	0.45	□□□□□ -2.34	not detected
PRP42	YDR235W	CBP2	P03874	630 aa	Predicted RBP	0.45	□□□□□ -2.34
PRP42	YDR235W	ERD1	P16151	362 aa		0.45	□□□□□ -2.34
PRP42	YDR235W	KRE1	P17260	313 aa		0.45	□□□□□ -2.34
PRP42	YDR235W	SNF6	P18888	332 aa		0.45	□□□□□ -2.34
PRP42	YDR235W	PUP2	P32379	260 aa		0.45	□□□□□ -2.34
PRP42	YDR235W	MEI5	P32489	222 aa		0.45	□□□□□ -2.34
PRP42	YDR235W	RXT2	P38255	430 aa		0.45	□□□□□ -2.34
PRP42	YDR235W	PEX32	P38292	413 aa		0.45	□□□□□ -2.34
PRP42	YDR235W	MED8	P38304	223 aa		0.45	□□□□□ -2.34
PRP42	YDR235W	CTM1	P38818	585 aa		0.45	□□□□□ -2.34
PRP42	YDR235W	ALP1	P38971	573 aa		0.45	□□□□□ -2.34
PRP42	YDR235W	PRP39	P39682	629 aa	Known RBP	0.45	□□□□□ -2.34
PRP42	YDR235W	YMR134W	P40207	237 aa		0.45	□□□□□ -2.34
PRP42	YDR235W	YNL143C	P53908	130 aa		0.45	□□□□□ -2.34
PRP42	YDR235W	MRX9	Q07349	420 aa	Known RBP	0.45	□□□□□ -2.34
PRP42	YDR235W	DTD1	Q07648	150 aa	Known RBP	0.45	□□□□□ -2.34
PRP42	YDR235W	RDL2	Q08742	149 aa	Known RBP	0.45	□□□□□ -2.34
PRP42	YDR235W	SGT2	Q12118	346 aa	Known RBP	0.45	□□□□□ -2.34
PRP42	YDR235W	TRM10	Q12400	293 aa		0.45	□□□□□ -2.34
PRP42	YDR235W	ERP3	Q12403	225 aa		0.45	□□□□□ -2.34
PRP42	YDR235W	FRE6	Q12473	712 aa		0.45	□□□□□ -2.34
PRP42	YDR235W	SPO24	Q3E752	67 aa		0.45	□□□□□ -2.34
PRP42	YDR235W	CDC42	P19073	191 aa		0.44	□□□□□ -2.34
PRP42	YDR235W	RBK1	P25332	333 aa		0.44	□□□□□ -2.34
PRP42	YDR235W	RSA4	P25382	515 aa	Known RBP	0.44	□□□□□ -2.34
PRP42	YDR235W	DCC1	P25559	380 aa		0.44	□□□□□ -2.34
PRP42	YDR235W	SUR1	P33300	382 aa		0.44	□□□□□ -2.34
PRP42	YDR235W	CSE1	P33307	960 aa		0.44	□□□□□ -2.34
PRP42	YDR235W	ADH5	P38113	351 aa	Known RBP	0.44	□□□□□ -2.34
PRP42	YDR235W	YBL081W	P38180	368 aa	Known RBP	0.44	□□□□□ -2.34
PRP42	YDR235W	MED6	P38782	295 aa		0.44	□□□□□ -2.34
PRP42	YDR235W	YHR122W	P38829	231 aa		0.44	□□□□□ -2.34
PRP42	YDR235W	PET8	P38921	284 aa		0.44	□□□□□ -2.34
PRP42	YDR235W	EDC2	P40023	145 aa	Predicted RBP	0.44	□□□□□ -2.34
PRP42	YDR235W	YER084W	P40057	128 aa		0.44	□□□□□ -2.34
PRP42	YDR235W	YER188W	P40103	239 aa		0.44	□□□□□ -2.34
PRP42	YDR235W	BTT1	P40314	149 aa	Predicted RBP	0.44	□□□□□ -2.34
PRP42	YDR235W	FYV8	P46949	817 aa	Known RBP	0.44	□□□□□ -2.34
PRP42	YDR235W	TAF6	P53040	516 aa		0.44	□□□□□ -2.34
PRP42	YDR235W	YGL114W	P53134	725 aa		0.44	□□□□□ -2.34
PRP42	YDR235W	PXR1	P53335	271 aa	Predicted RBP	0.44	□□□□□ -2.34
PRP42	YDR235W	YNR066C	P53752	436 aa		0.44	□□□□□ -2.34
PRP42	YDR235W	YNL146W	P53906	100 aa		0.44	□□□□□ -2.34
PRP42	YDR235W	AQR1	P53943	586 aa		0.44	□□□□□ -2.34
PRP42	YDR235W	YNL040W	P53960	456 aa	Predicted RBP	0.44	□□□□□ -2.34
PRP42	YDR235W	ACT1	P60010	375 aa	Known RBP	0.44	□□□□□ -2.34
PRP42	YDR235W	PEX30	Q06169	523 aa		0.44	□□□□□ -2.34
PRP42	YDR235W	YPL245W	Q12179	454 aa	Known RBP	0.44	□□□□□ -2.34
PRP42	YDR235W	PRM4	Q12498	284 aa		0.44	□□□□□ -2.34
PRP42	YDR235W	SKS1	Q12505	502 aa		0.44	□□□□□ -2.34
PRP42	YDR235W	YAK1	P14680	807 aa		0.43	□□□□□ -2.34
PRP42	YDR235W	VPS1	P21576	704 aa	Known RBP	0.43	□□□□□ -2.34
PRP42	YDR235W	PRE7	P23724	241 aa	Known RBP	0.43	□□□□□ -2.34
PRP42	YDR235W	VMA5	P31412	392 aa	Known RBP	0.43	□□□□□ -2.34
PRP42	YDR235W	BUD2	P33314	1104 aa		0.43	□□□□□ -2.34
PRP42	YDR235W	LAS1	P36146	502 aa	Predicted RBP	0.43	□□□□□ -2.34
PRP42	YDR235W	CUE3	P53137	624 aa	Known RBP	0.43	□□□□□ -2.34
PRP42	YDR235W	YGR016W	P53209	190 aa		0.43	□□□□□ -2.34
PRP42	YDR235W	RVB1	Q03940	463 aa	Known RBP	0.43	□□□□□ -2.34
PRP42	YDR235W	ARC18	Q05933	178 aa	Known RBP	0.43	□□□□□ -2.34
PRP42	YDR235W	BUR2	Q05949	395 aa		0.43	□□□□□ -2.34
PRP42	YDR235W	DBP9	Q06218	594 aa	Known RBP	0.43	□□□□□ -2.34
PRP42	YDR235W	YOR292C	Q08743	309 aa		0.43	□□□□□ -2.34
PRP42	YDR235W	FEX1	Q08913	375 aa		0.43	□□□□□ -2.34
PRP42	YDR235W	YPL278C	Q08990	100 aa		0.43	□□□□□ -2.34
PRP42	YDR235W	FEX2	Q08991	375 aa		0.43	□□□□□ -2.34
PRP42	YDR235W	VIK1	Q12045	647 aa		0.43	□□□□□ -2.34
PRP42	YDR235W	NBL1	Q3E7Y6	73 aa		0.43	□□□□□ -2.34
PRP42	YDR235W	YOL163W	P0CF20	169 aa		0.42	□□□□□ -2.34
PRP42	YDR235W	TAL1	P15019	335 aa	Known RBP	0.42	□□□□□ -2.34
PRP42	YDR235W	ACB1	P31787	87 aa		0.42	□□□□□ -2.34
PRP42	YDR235W	MRPL6	P32904	214 aa		0.42	□□□□□ -2.34
PRP42	YDR235W	CAB3	P36076	571 aa		0.42	□□□□□ -2.34
PRP42	YDR235W	AIM29	P36154	155 aa		0.42	□□□□□ -2.34
PRP42	YDR235W	SOP4	P39543	234 aa	Predicted RBP	0.42	□□□□□ -2.34
PRP42	YDR235W	YIL089W	P40500	205 aa		0.42	□□□□□ -2.34
PRP42	YDR235W	YIL012W	P40551	113 aa		0.42	□□□□□ -2.34
PRP42	YDR235W	MIG2	P53035	382 aa		0.42	□□□□□ -2.34
PRP42	YDR235W	UFD1	P53044	361 aa		0.42	□□□□□ -2.34
PRP42	YDR235W	SYF2	P53277	215 aa	Predicted RBP	0.42	□□□□□ -2.34
PRP42	YDR235W	YGR168C	P53293	376 aa		0.42	□□□□□ -2.34
PRP42	YDR235W	IRC4	Q03036	179 aa		0.42	□□□□□ -2.34
PRP42	YDR235W	RCF1	Q03713	159 aa		0.42	□□□□□ -2.34
PRP42	YDR235W	UBX2	Q04228	584 aa		0.42	□□□□□ -2.34
PRP42	YDR235W	SEC13	Q04491	297 aa	Known RBP	0.42	□□□□□ -2.34
PRP42	YDR235W	RPL18A	P0CX49	186 aa	Known RBP	0.42	□□□□□ -2.34
PRP42	YDR235W	RPL18B	P0CX50	186 aa	Known RBP	0.42	□□□□□ -2.34
PRP42	YDR235W	POT1	P27796	417 aa	Known RBP RIP-Chip data	0.42	□□□□□ -2.34	not detected
PRP42	YDR235W	IMP1	P28627	190 aa		0.42	□□□□□ -2.34
PRP42	YDR235W	CDC13	P32797	924 aa	Known RBP	0.42	□□□□□ -2.34
PRP42	YDR235W	ZRT1	P32804	376 aa		0.42	□□□□□ -2.34
PRP42	YDR235W	GPX1	P36014	167 aa		0.42	□□□□□ -2.34
PRP42	YDR235W	SIF2	P38262	535 aa		0.42	□□□□□ -2.34

Retrieved 100 of 5,963 RNA–protein pairs in 24.9 ms