RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C UBA1P22515 1024 aaKnown RBP1.13□□□□□ -2.23
PCF11YDR228C MRX9Q07349 420 aaKnown RBP1.13□□□□□ -2.23
PCF11YDR228C YOL163WP0CF20 169 aa1.12□□□□□ -2.23
PCF11YDR228C MAS1P10507 462 aa1.12□□□□□ -2.23
PCF11YDR228C PRE7P23724 241 aaKnown RBP1.12□□□□□ -2.23
PCF11YDR228C MNE1P24720 663 aa1.12□□□□□ -2.23
PCF11YDR228C RDS1P25611 832 aa1.12□□□□□ -2.23
PCF11YDR228C YSW1P38280 609 aa1.12□□□□□ -2.23
PCF11YDR228C GDT1P38301 280 aaPredicted RBP1.12□□□□□ -2.23
PCF11YDR228C YHL044WP38727 235 aa1.12□□□□□ -2.23
PCF11YDR228C YIL089WP40500 205 aa1.12□□□□□ -2.23
PCF11YDR228C YOR012WQ12351 137 aa1.12□□□□□ -2.23
PCF11YDR228C RPL6BP05739 176 aaKnown RBP1.12□□□□□ -2.23
PCF11YDR228C SAG1P20840 650 aa1.12□□□□□ -2.23
PCF11YDR228C HMX1P32339 317 aa1.12□□□□□ -2.23
PCF11YDR228C VPH2P32341 215 aa1.12□□□□□ -2.23
PCF11YDR228C PUP2P32379 260 aa1.12□□□□□ -2.23
PCF11YDR228C KTI12P34253 313 aaKnown RBP1.12□□□□□ -2.23
PCF11YDR228C IML3P38265 245 aa1.12□□□□□ -2.23
PCF11YDR228C EDC2P40023 145 aaPredicted RBP1.12□□□□□ -2.23
PCF11YDR228C RPL6AQ02326 176 aaKnown RBP1.12□□□□□ -2.23
PCF11YDR228C PLB3Q08108 686 aa1.12□□□□□ -2.23
PCF11YDR228C GDI1P39958 451 aaKnown RBP1.11□□□□□ -2.23
PCF11YDR228C YNR066CP53752 436 aa1.11□□□□□ -2.23
PCF11YDR228C TFB5Q3E7C1 72 aaPredicted RBP1.11□□□□□ -2.23
PCF11YDR228C CLB6P32943 380 aa1.1□□□□□ -2.23
PCF11YDR228C FYV8P46949 817 aaKnown RBP1.1□□□□□ -2.23
PCF11YDR228C CGI121Q03705 181 aaKnown RBP1.1□□□□□ -2.23
PCF11YDR228C DTD1Q07648 150 aaKnown RBP1.1□□□□□ -2.23
PCF11YDR228C RDL2Q08742 149 aaKnown RBP1.1□□□□□ -2.23
PCF11YDR228C YOR283WQ12040 230 aaKnown RBP1.1□□□□□ -2.23
PCF11YDR228C YPL245WQ12179 454 aaKnown RBP1.1□□□□□ -2.23
PCF11YDR228C SKS1Q12505 502 aa1.1□□□□□ -2.23
PCF11YDR228C CBP2P03874 630 aaPredicted RBP1.09□□□□□ -2.23
PCF11YDR228C PET8P38921 284 aa1.09□□□□□ -2.23
PCF11YDR228C YMR310CQ04867 317 aaPredicted RBP1.09□□□□□ -2.23
PCF11YDR228C YAK1P14680 807 aa1.09□□□□□ -2.24
PCF11YDR228C CAB3P36076 571 aa1.09□□□□□ -2.24
PCF11YDR228C BAT2P47176 376 aaKnown RBP1.09□□□□□ -2.24
PCF11YDR228C SYF2P53277 215 aaPredicted RBP1.09□□□□□ -2.24
PCF11YDR228C HCH1P53834 153 aa1.09□□□□□ -2.24
PCF11YDR228C SXM1Q04175 944 aaKnown RBP1.09□□□□□ -2.24
PCF11YDR228C YLR012CQ07927 99 aa1.09□□□□□ -2.24
PCF11YDR228C TIM22Q12328 207 aa1.09□□□□□ -2.24
PCF11YDR228C SEC28P40509 296 aaKnown RBP1.08□□□□□ -2.24
PCF11YDR228C OSH6Q02201 448 aa1.08□□□□□ -2.24
PCF11YDR228C UBX2Q04228 584 aa1.08□□□□□ -2.24
PCF11YDR228C VPS68Q12016 184 aa1.08□□□□□ -2.24
PCF11YDR228C GLE1Q12315 538 aa1.08□□□□□ -2.24
PCF11YDR228C ZWF1P11412 505 aaKnown RBP1.07□□□□□ -2.24
PCF11YDR228C SPS100P13130 326 aa1.07□□□□□ -2.24
PCF11YDR228C CIN8P27895 1000 aa1.07□□□□□ -2.24
PCF11YDR228C SUR1P33300 382 aa1.07□□□□□ -2.24
PCF11YDR228C MYO3P36006 1272 aa1.07□□□□□ -2.24
PCF11YDR228C AIM29P36154 155 aa1.07□□□□□ -2.24
PCF11YDR228C YER188WP40103 239 aa1.07□□□□□ -2.24
PCF11YDR228C RPA34P47006 233 aaPredicted RBP1.07□□□□□ -2.24
PCF11YDR228C YGR266WP53326 701 aa1.07□□□□□ -2.24
PCF11YDR228C YOR292CQ08743 309 aa1.07□□□□□ -2.24
PCF11YDR228C YAL063C-AQ3E791 96 aa1.07□□□□□ -2.24
PCF11YDR228C HSP82P02829 709 aaKnown RBP1.07□□□□□ -2.24
PCF11YDR228C HXT2P23585 541 aa1.07□□□□□ -2.24
PCF11YDR228C YEL043WP32618 956 aa1.07□□□□□ -2.24
PCF11YDR228C DAD2P36162 133 aa1.07□□□□□ -2.24
PCF11YDR228C BTT1P40314 149 aaPredicted RBP1.07□□□□□ -2.24
PCF11YDR228C YFL040WP43562 540 aa1.07□□□□□ -2.24
PCF11YDR228C SEC13Q04491 297 aaKnown RBP1.07□□□□□ -2.24
PCF11YDR228C HIS3P06633 220 aa1.06□□□□□ -2.24
PCF11YDR228C ADH3P07246 375 aaKnown RBP1.06□□□□□ -2.24
PCF11YDR228C MPE1P35728 441 aaKnown RBP1.06□□□□□ -2.24
PCF11YDR228C ADH5P38113 351 aaKnown RBP1.06□□□□□ -2.24
PCF11YDR228C TAF6P53040 516 aa1.06□□□□□ -2.24
PCF11YDR228C LIF1P53150 421 aa1.06□□□□□ -2.24
PCF11YDR228C RSC1P53236 928 aa1.06□□□□□ -2.24
PCF11YDR228C PRR2Q12310 699 aa1.06□□□□□ -2.24
PCF11YDR228C PFK27Q12471 397 aaPredicted RBP1.06□□□□□ -2.24
PCF11YDR228C GPX1P36014 167 aa1.05□□□□□ -2.24
PCF11YDR228C SYS1P41544 203 aa1.05□□□□□ -2.24
PCF11YDR228C PIR5P46999 287 aa1.05□□□□□ -2.24
PCF11YDR228C PXR1P53335 271 aaPredicted RBP1.05□□□□□ -2.24
PCF11YDR228C YNL143CP53908 130 aa1.05□□□□□ -2.24
PCF11YDR228C RPL26AP05743 127 aaKnown RBP1.05□□□□□ -2.24
PCF11YDR228C PHO80P20052 293 aa1.05□□□□□ -2.24
PCF11YDR228C RBK1P25332 333 aa1.05□□□□□ -2.24
PCF11YDR228C MEI5P32489 222 aa1.05□□□□□ -2.24
PCF11YDR228C SOP4P39543 234 aaPredicted RBP1.05□□□□□ -2.24
PCF11YDR228C YFL064CP43540 174 aa1.05□□□□□ -2.24
PCF11YDR228C RPL26BP53221 127 aaKnown RBP1.05□□□□□ -2.24
PCF11YDR228C VIK1Q12045 647 aa1.05□□□□□ -2.24
PCF11YDR228C RGS2Q99188 309 aa1.05□□□□□ -2.24
PCF11YDR228C STE3P06783 470 aa1.04□□□□□ -2.24
PCF11YDR228C NRG2P38082 220 aa1.04□□□□□ -2.24
PCF11YDR228C MIG2P53035 382 aa1.04□□□□□ -2.24
PCF11YDR228C SSU72P53538 206 aaPredicted RBP1.04□□□□□ -2.24
PCF11YDR228C YLL053CP0CD98 152 aa1.03□□□□□ -2.24
PCF11YDR228C ACB1P31787 87 aa1.03□□□□□ -2.24
PCF11YDR228C GCG1P32656 232 aaKnown RBP1.03□□□□□ -2.24
PCF11YDR228C ALP1P38971 573 aa1.03□□□□□ -2.24
PCF11YDR228C YJR146WP47174 117 aa1.03□□□□□ -2.24
PCF11YDR228C DAN1P47178 298 aa1.03□□□□□ -2.24
Retrieved 100 of 5,963 RNA–protein pairs in 20.4 ms