RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 RHPN2Q8IUC4 686 aa21.81■■□□□ 1.08
CLN3-262ENST00000637699 KSR1Q8IVT5 923 aa21.81■■□□□ 1.08
CLN3-262ENST00000637699 CEP89Q96ST8 783 aa21.81■■□□□ 1.08
CLN3-262ENST00000637699 TRAIPQ9BWF2 469 aa21.81■■□□□ 1.08
CLN3-262ENST00000637699 MFSD1Q9H3U5 465 aa21.81■■□□□ 1.08
CLN3-262ENST00000637699 FAM105AQ9NUU6 356 aa21.81■■□□□ 1.08
CLN3-262ENST00000637699 DNAJB4Q9UDY4 337 aa21.81■■□□□ 1.08
CLN3-262ENST00000637699 IRAK3Q9Y616 596 aa21.81■■□□□ 1.08
CLN3-262ENST00000637699 NID2Q14112 1375 aa21.81■■□□□ 1.08
CLN3-262ENST00000637699 IGKV6-21A0A0C4DH24 114 aa21.8■■□□□ 1.08
CLN3-262ENST00000637699 GIT2Q14161 759 aa21.8■■□□□ 1.08
CLN3-262ENST00000637699 ASTLQ6HA08 431 aaPredicted RBP21.8■■□□□ 1.08
CLN3-262ENST00000637699 CATSPER4Q7RTX7 472 aa21.8■■□□□ 1.08
CLN3-262ENST00000637699 PLCD3Q8N3E9 789 aa21.8■■□□□ 1.08
CLN3-262ENST00000637699 RDM1Q8NG50 284 aa21.8■■□□□ 1.08
CLN3-262ENST00000637699 NLRP4Q96MN2 994 aa21.8■■□□□ 1.08
CLN3-262ENST00000637699 INO80BQ9C086 356 aaPredicted RBP21.8■■□□□ 1.08
CLN3-262ENST00000637699 NCOA5Q9HCD5 579 aaKnown RBP21.8■■□□□ 1.08
CLN3-262ENST00000637699 USTQ9Y2C2 406 aa21.8■■□□□ 1.08
CLN3-262ENST00000637699 SNX14Q9Y5W7 946 aa21.8■■□□□ 1.08
CLN3-262ENST00000637699 PLXNA3P51805 1871 aa21.79■■□□□ 1.08
CLN3-262ENST00000637699 SPDYE4A6NLX3 237 aa21.79■■□□□ 1.08
CLN3-262ENST00000637699 OFD1O75665 1012 aa21.79■■□□□ 1.08
CLN3-262ENST00000637699 TDP2O95551 362 aa21.79■■□□□ 1.08
CLN3-262ENST00000637699 IFNAR1P17181 557 aa21.79■■□□□ 1.08
CLN3-262ENST00000637699 SLC11A1P49279 550 aa21.79■■□□□ 1.08
CLN3-262ENST00000637699 Q4G0T1 1027 aa21.79■■□□□ 1.08
CLN3-262ENST00000637699 ASCL5Q7RTU5 278 aa21.79■■□□□ 1.08
CLN3-262ENST00000637699 ZNF410Q86VK4 478 aa21.79■■□□□ 1.08
CLN3-262ENST00000637699 RSPH1Q8WYR4 309 aa21.79■■□□□ 1.08
CLN3-262ENST00000637699 KCNB2Q92953 911 aa21.79■■□□□ 1.08
CLN3-262ENST00000637699 VN1R3Q9BXE9 311 aa21.79■■□□□ 1.08
CLN3-262ENST00000637699 VPS13AQ96RL7 3174 aa21.78■■□□□ 1.08
CLN3-262ENST00000637699 CARNS1A5YM72 827 aa21.78■■□□□ 1.08
CLN3-262ENST00000637699 PROB1E7EW31 1015 aa21.78■■□□□ 1.08
CLN3-262ENST00000637699 MAFO75444 373 aaPredicted RBP21.78■■□□□ 1.08
CLN3-262ENST00000637699 SSBP05455 408 aaKnown RBP eCLIP21.78■■□□□ 1.08
CLN3-262ENST00000637699 RPS6KB1P23443 525 aa21.78■■□□□ 1.08
CLN3-262ENST00000637699 ZNF280BQ86YH2 543 aa21.78■■□□□ 1.08
CLN3-262ENST00000637699 SH3GLB2Q9NR46 395 aa21.78■■□□□ 1.08
CLN3-262ENST00000637699 CYP26B1Q9NR63 512 aa21.78■■□□□ 1.08
CLN3-262ENST00000637699 B4GALT3O60512 393 aa21.77■■□□□ 1.08
CLN3-262ENST00000637699 ZNF623O75123 536 aa21.77■■□□□ 1.08
CLN3-262ENST00000637699 KLRC2P26717 231 aa21.77■■□□□ 1.08
CLN3-262ENST00000637699 PDIA3P30101 505 aaKnown RBP21.77■■□□□ 1.08
CLN3-262ENST00000637699 HSPA4P34932 840 aa21.77■■□□□ 1.08
CLN3-262ENST00000637699 RAB27AP51159 221 aa21.77■■□□□ 1.08
CLN3-262ENST00000637699 PTPN14Q15678 1187 aa21.77■■□□□ 1.08
CLN3-262ENST00000637699 PLA2G4FQ68DD2 849 aa21.77■■□□□ 1.08
CLN3-262ENST00000637699 B3GNT9Q6UX72 402 aa21.77■■□□□ 1.08
CLN3-262ENST00000637699 GPR149Q86SP6 731 aa21.77■■□□□ 1.08
CLN3-262ENST00000637699 PPFIBP1Q86W92 1011 aa21.77■■□□□ 1.08
CLN3-262ENST00000637699 FBXL16Q8N461 479 aa21.77■■□□□ 1.08
CLN3-262ENST00000637699 FLCNQ8NFG4 579 aa21.77■■□□□ 1.08
CLN3-262ENST00000637699 ACSF2Q96CM8 615 aaPredicted RBP21.77■■□□□ 1.08
CLN3-262ENST00000637699 PGBD4Q96DM1 585 aa21.77■■□□□ 1.08
CLN3-262ENST00000637699 AGXT2Q9BYV1 514 aa21.77■■□□□ 1.08
CLN3-262ENST00000637699 PCDHA4Q9UN74 947 aa21.77■■□□□ 1.08
CLN3-262ENST00000637699 PCDHB2Q9Y5E7 798 aa21.77■■□□□ 1.08
CLN3-262ENST00000637699 RIF1Q5UIP0 2472 aaKnown RBP21.77■■□□□ 1.07
CLN3-262ENST00000637699 SPTBN4Q9H254 2564 aa21.76■■□□□ 1.07
CLN3-262ENST00000637699 CYP3A7-CYP3A51PA0A087WV96 503 aa21.76■■□□□ 1.07
CLN3-262ENST00000637699 CYP3A7P24462 503 aa21.76■■□□□ 1.07
CLN3-262ENST00000637699 CLCN5P51795 746 aa21.76■■□□□ 1.07
CLN3-262ENST00000637699 ANO5Q75V66 913 aa21.76■■□□□ 1.07
CLN3-262ENST00000637699 URGCPQ8TCY9 931 aa21.76■■□□□ 1.07
CLN3-262ENST00000637699 KLHL5Q96PQ7 755 aa21.76■■□□□ 1.07
CLN3-262ENST00000637699 EMILIN2Q9BXX0 1053 aa21.76■■□□□ 1.07
CLN3-262ENST00000637699 C22orf23Q9BZE7 217 aa21.76■■□□□ 1.07
CLN3-262ENST00000637699 SFXN1Q9H9B4 322 aa21.76■■□□□ 1.07
CLN3-262ENST00000637699 DDHD2O94830 711 aa21.75■■□□□ 1.07
CLN3-262ENST00000637699 NBL1P41271 181 aa21.75■■□□□ 1.07
CLN3-262ENST00000637699 AFF1P51825 1210 aaKnown RBP21.75■■□□□ 1.07
CLN3-262ENST00000637699 PSMC5P62195 406 aa21.75■■□□□ 1.07
CLN3-262ENST00000637699 AGMOQ6ZNB7 445 aa21.75■■□□□ 1.07
CLN3-262ENST00000637699 CCDC149Q6ZUS6 474 aa21.75■■□□□ 1.07
CLN3-262ENST00000637699 OTOP3Q7RTS5 596 aa21.75■■□□□ 1.07
CLN3-262ENST00000637699 ETNPPLQ8TBG4 499 aa21.75■■□□□ 1.07
CLN3-262ENST00000637699 IFT122Q9HBG6 1241 aa21.75■■□□□ 1.07
CLN3-262ENST00000637699 DMDP11532 3685 aa21.75■■□□□ 1.07
CLN3-262ENST00000637699 PRR23AA6NEV1 266 aa21.74■■□□□ 1.07
CLN3-262ENST00000637699 ALDH2P05091 517 aa21.74■■□□□ 1.07
CLN3-262ENST00000637699 CNPP09543 421 aaKnown RBP21.74■■□□□ 1.07
CLN3-262ENST00000637699 CLCN4P51793 760 aa21.74■■□□□ 1.07
CLN3-262ENST00000637699 NPEPPSP55786 919 aa21.74■■□□□ 1.07
CLN3-262ENST00000637699 SSRP1Q08945 709 aaKnown RBP21.74■■□□□ 1.07
CLN3-262ENST00000637699 FRMD5Q7Z6J6 570 aa21.74■■□□□ 1.07
CLN3-262ENST00000637699 TRIM22Q8IYM9 498 aa21.74■■□□□ 1.07
CLN3-262ENST00000637699 BLIDQ8IZY5 108 aa21.74■■□□□ 1.07
CLN3-262ENST00000637699 FAM193BQ96PV7 902 aaPredicted RBP21.74■■□□□ 1.07
CLN3-262ENST00000637699 JPH2Q9BR39 696 aaPredicted RBP21.74■■□□□ 1.07
CLN3-262ENST00000637699 AGPAT5Q9NUQ2 364 aa21.74■■□□□ 1.07
CLN3-262ENST00000637699 FAN1Q9Y2M0 1017 aa21.74■■□□□ 1.07
CLN3-262ENST00000637699 COL4A3BPQ9Y5P4 624 aa21.74■■□□□ 1.07
CLN3-262ENST00000637699 EML1O00423 815 aa21.73■■□□□ 1.07
CLN3-262ENST00000637699 SRGAP2CP0DJJ0 459 aa21.73■■□□□ 1.07
CLN3-262ENST00000637699 TDGQ13569 410 aa21.73■■□□□ 1.07
CLN3-262ENST00000637699 CENPQQ7L2Z9 268 aaPredicted RBP21.73■■□□□ 1.07
CLN3-262ENST00000637699 ZNF579Q8NAF0 562 aaKnown RBP21.73■■□□□ 1.07
CLN3-262ENST00000637699 RSAD1Q9HA92 442 aa21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms