RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 PSPC1Q8WXF1 523 aaKnown RBP22.04■■□□□ 1.12
CLN3-250ENST00000636839 PPME1Q9Y570 386 aa22.04■■□□□ 1.12
CLN3-250ENST00000636839 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP22.04■■□□□ 1.12
CLN3-250ENST00000636839 EVPLQ92817 2033 aa22.04■■□□□ 1.12
CLN3-250ENST00000636839 SMIM10L2AP0DMW4 78 aa22.04■■□□□ 1.12
CLN3-250ENST00000636839 SMIM10L2BP0DMW5 78 aa22.04■■□□□ 1.12
CLN3-250ENST00000636839 RPL13P26373 211 aaKnown RBP22.04■■□□□ 1.12
CLN3-250ENST00000636839 HOXD10P28358 340 aa22.04■■□□□ 1.12
CLN3-250ENST00000636839 GNASQ5JWF2 1037 aa22.04■■□□□ 1.12
CLN3-250ENST00000636839 TRIM59Q8IWR1 403 aa22.04■■□□□ 1.12
CLN3-250ENST00000636839 EIF2AK3Q9NZJ5 1116 aaKnown RBP22.04■■□□□ 1.12
CLN3-250ENST00000636839 MYCNP04198 464 aaPredicted RBP22.03■■□□□ 1.12
CLN3-250ENST00000636839 MFSD10Q14728 455 aa22.03■■□□□ 1.12
CLN3-250ENST00000636839 SLC17A8Q8NDX2 589 aa22.03■■□□□ 1.12
CLN3-250ENST00000636839 LMBR1Q8WVP7 490 aa22.03■■□□□ 1.12
CLN3-250ENST00000636839 NLRP4Q96MN2 994 aa22.03■■□□□ 1.12
CLN3-250ENST00000636839 NDST4Q9H3R1 872 aa22.03■■□□□ 1.12
CLN3-250ENST00000636839 THSD7BQ9C0I4 1608 aa22.03■■□□□ 1.12
CLN3-250ENST00000636839 GOLGA8IPA6NC78 632 aa22.02■■□□□ 1.12
CLN3-250ENST00000636839 GOLGA8JA6NMD2 632 aa22.02■■□□□ 1.12
CLN3-250ENST00000636839 GOLGA6L6A8MZA4 724 aa22.02■■□□□ 1.12
CLN3-250ENST00000636839 RNF225M0QZC1 329 aaPredicted RBP22.02■■□□□ 1.12
CLN3-250ENST00000636839 CSDE1O75534 798 aaKnown RBP22.02■■□□□ 1.12
CLN3-250ENST00000636839 ZNF200P98182 395 aaPredicted RBP22.02■■□□□ 1.12
CLN3-250ENST00000636839 PURAQ00577 322 aaKnown RBP22.02■■□□□ 1.12
CLN3-250ENST00000636839 TBX2Q13207 712 aaPredicted RBP22.02■■□□□ 1.12
CLN3-250ENST00000636839 PPP2R5AQ15172 486 aa22.02■■□□□ 1.12
CLN3-250ENST00000636839 MAN2A1Q16706 1144 aa22.02■■□□□ 1.12
CLN3-250ENST00000636839 LINC01465Q8N7H1 131 aa22.02■■□□□ 1.12
CLN3-250ENST00000636839 CPLX3Q8WVH0 158 aa22.02■■□□□ 1.12
CLN3-250ENST00000636839 TCP11Q8WWU5 503 aa22.02■■□□□ 1.12
CLN3-250ENST00000636839 BORCS6Q96GS4 357 aa22.02■■□□□ 1.12
CLN3-250ENST00000636839 K7ERI5 159 aa22.02■■□□□ 1.12
CLN3-250ENST00000636839 VTNP04004 478 aa22.02■■□□□ 1.12
CLN3-250ENST00000636839 PSEN2P49810 448 aa22.02■■□□□ 1.12
CLN3-250ENST00000636839 MARSP56192 900 aaKnown RBP22.02■■□□□ 1.12
CLN3-250ENST00000636839 GJA9P57773 515 aa22.02■■□□□ 1.12
CLN3-250ENST00000636839 NFIL3Q16649 462 aa22.02■■□□□ 1.12
CLN3-250ENST00000636839 ERO1AQ96HE7 468 aa22.02■■□□□ 1.12
CLN3-250ENST00000636839 HAS3O00219 553 aa22.01■■□□□ 1.11
CLN3-250ENST00000636839 EXOC3O60645 756 aa22.01■■□□□ 1.11
CLN3-250ENST00000636839 GNA14O95837 355 aa22.01■■□□□ 1.11
CLN3-250ENST00000636839 RARBP10826 455 aa22.01■■□□□ 1.11
CLN3-250ENST00000636839 CXCL17Q6UXB2 119 aa22.01■■□□□ 1.11
CLN3-250ENST00000636839 SAAL1Q96ER3 474 aa22.01■■□□□ 1.11
CLN3-250ENST00000636839 ZBTB45Q96K62 511 aaPredicted RBP22.01■■□□□ 1.11
CLN3-250ENST00000636839 MINDY3Q9H8M7 445 aa22.01■■□□□ 1.11
CLN3-250ENST00000636839 SAGE1Q9NXZ1 904 aa22.01■■□□□ 1.11
CLN3-250ENST00000636839 HSPBP1Q9NZL4 362 aa22.01■■□□□ 1.11
CLN3-250ENST00000636839 IMPACTQ9P2X3 320 aa22.01■■□□□ 1.11
CLN3-250ENST00000636839 ARMCX3Q9UH62 379 aaPredicted RBP22.01■■□□□ 1.11
CLN3-250ENST00000636839 CASP8AP2Q9UKL3 1982 aa22.01■■□□□ 1.11
CLN3-250ENST00000636839 HNRNPDLO14979 420 aaKnown RBP22.01■■□□□ 1.11
CLN3-250ENST00000636839 GAS2O43903 313 aaKnown RBP22.01■■□□□ 1.11
CLN3-250ENST00000636839 HMGCRP04035 888 aa22.01■■□□□ 1.11
CLN3-250ENST00000636839 ADKP55263 362 aaKnown RBP22.01■■□□□ 1.11
CLN3-250ENST00000636839 MXD4Q14582 209 aaPredicted RBP22.01■■□□□ 1.11
CLN3-250ENST00000636839 FRMD5Q7Z6J6 570 aa22.01■■□□□ 1.11
CLN3-250ENST00000636839 FAM186BQ8IYM0 893 aa22.01■■□□□ 1.11
CLN3-250ENST00000636839 RETREG2Q8NC44 543 aa22.01■■□□□ 1.11
CLN3-250ENST00000636839 GOLGA5Q8TBA6 731 aa22.01■■□□□ 1.11
CLN3-250ENST00000636839 BICD1Q96G01 975 aa22.01■■□□□ 1.11
CLN3-250ENST00000636839 TARS2Q9BW92 718 aaKnown RBP22.01■■□□□ 1.11
CLN3-250ENST00000636839 EXOC7Q9UPT5 735 aa22.01■■□□□ 1.11
CLN3-250ENST00000636839 UTP18Q9Y5J1 556 aaKnown RBP eCLIP22.01■■□□□ 1.11
CLN3-250ENST00000636839 MAGEB2O15479 319 aa22■■□□□ 1.11
CLN3-250ENST00000636839 DNM2P50570 870 aa22■■□□□ 1.11
CLN3-250ENST00000636839 RBL2Q08999 1139 aa22■■□□□ 1.11
CLN3-250ENST00000636839 SYCP1Q15431 976 aa22■■□□□ 1.11
CLN3-250ENST00000636839 BRDTQ58F21 947 aaPredicted RBP22■■□□□ 1.11
CLN3-250ENST00000636839 MAP3K21Q5TCX8 1036 aa22■■□□□ 1.11
CLN3-250ENST00000636839 SLC9A9Q8IVB4 645 aa22■■□□□ 1.11
CLN3-250ENST00000636839 EXOC8Q8IYI6 725 aa22■■□□□ 1.11
CLN3-250ENST00000636839 KIAA0319LQ8IZA0 1049 aa22■■□□□ 1.11
CLN3-250ENST00000636839 HVCN1Q96D96 273 aa22■■□□□ 1.11
CLN3-250ENST00000636839 JPH2Q9BR39 696 aaPredicted RBP22■■□□□ 1.11
CLN3-250ENST00000636839 HAPLN2Q9GZV7 340 aa22■■□□□ 1.11
CLN3-250ENST00000636839 XPNPEP3Q9NQH7 507 aa22■■□□□ 1.11
CLN3-250ENST00000636839 AKT3Q9Y243 479 aa22■■□□□ 1.11
CLN3-250ENST00000636839 COL1A2P08123 1366 aa22■■□□□ 1.11
CLN3-250ENST00000636839 ADAMTS4O75173 837 aa21.99■■□□□ 1.11
CLN3-250ENST00000636839 IQCF3P0C7M6 154 aa21.99■■□□□ 1.11
CLN3-250ENST00000636839 EPB41P11171 864 aaKnown RBP21.99■■□□□ 1.11
CLN3-250ENST00000636839 PSMC2P35998 433 aaKnown RBP21.99■■□□□ 1.11
CLN3-250ENST00000636839 DCAF17Q5H9S7 520 aaPredicted RBP21.99■■□□□ 1.11
CLN3-250ENST00000636839 RUFY4Q6ZNE9 571 aa21.99■■□□□ 1.11
CLN3-250ENST00000636839 LRRC8AQ8IWT6 810 aa21.99■■□□□ 1.11
CLN3-250ENST00000636839 UPF3AQ9H1J1 476 aaKnown RBP21.99■■□□□ 1.11
CLN3-250ENST00000636839 TULP1O00294 542 aaPredicted RBP21.99■■□□□ 1.11
CLN3-250ENST00000636839 SLC16A3O15427 465 aaKnown RBP21.99■■□□□ 1.11
CLN3-250ENST00000636839 TPM2P07951 284 aa21.99■■□□□ 1.11
CLN3-250ENST00000636839 TMEM62Q0P6H9 643 aa21.99■■□□□ 1.11
CLN3-250ENST00000636839 KCNH2Q12809 1159 aa21.99■■□□□ 1.11
CLN3-250ENST00000636839 STRN3Q13033 797 aa21.99■■□□□ 1.11
CLN3-250ENST00000636839 HS1BP3Q53T59 392 aa21.99■■□□□ 1.11
CLN3-250ENST00000636839 CDCA2Q69YH5 1023 aaPredicted RBP21.99■■□□□ 1.11
CLN3-250ENST00000636839 NFRKBQ6P4R8 1299 aa21.99■■□□□ 1.11
CLN3-250ENST00000636839 CCDC113Q9H0I3 377 aa21.99■■□□□ 1.11
CLN3-250ENST00000636839 FAM49AQ9H0Q0 323 aaPredicted RBP21.99■■□□□ 1.11
CLN3-250ENST00000636839 IFT122Q9HBG6 1241 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms