RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 CGNQ9P2M7 1197 aaKnown RBP15.65■□□□□ 0.1
USP39-220ENST00000613444 SUCLA2Q9P2R7 463 aaPredicted RBP15.65■□□□□ 0.1
USP39-220ENST00000613444 LRRIQ4A6NIV6 560 aa15.64■□□□□ 0.09
USP39-220ENST00000613444 GOLGA6L6A8MZA4 724 aa15.64■□□□□ 0.09
USP39-220ENST00000613444 ANKRD63C9JTQ0 380 aa15.64■□□□□ 0.09
USP39-220ENST00000613444 SLC16A3O15427 465 aaKnown RBP15.64■□□□□ 0.09
USP39-220ENST00000613444 HMGCRP04035 888 aa15.64■□□□□ 0.09
USP39-220ENST00000613444 GJB1P08034 283 aa15.64■□□□□ 0.09
USP39-220ENST00000613444 SCP2P22307 547 aa15.64■□□□□ 0.09
USP39-220ENST00000613444 PURAQ00577 322 aaKnown RBP15.64■□□□□ 0.09
USP39-220ENST00000613444 MXD4Q14582 209 aaPredicted RBP15.64■□□□□ 0.09
USP39-220ENST00000613444 KIAA0753Q2KHM9 967 aa15.64■□□□□ 0.09
USP39-220ENST00000613444 VWA3BQ502W6 1294 aa15.64■□□□□ 0.09
USP39-220ENST00000613444 SPECC1LQ69YQ0 1117 aa15.64■□□□□ 0.09
USP39-220ENST00000613444 MTHFD1LQ6UB35 978 aa15.64■□□□□ 0.09
USP39-220ENST00000613444 FRMD5Q7Z6J6 570 aa15.64■□□□□ 0.09
USP39-220ENST00000613444 CBWD1Q9BRT8 395 aa15.64■□□□□ 0.09
USP39-220ENST00000613444 EDN1P05305 212 aa15.63■□□□□ 0.09
USP39-220ENST00000613444 CNGA1P29973 690 aa15.63■□□□□ 0.09
USP39-220ENST00000613444 ABCD1P33897 745 aa15.63■□□□□ 0.09
USP39-220ENST00000613444 HIC1Q14526 733 aa15.63■□□□□ 0.09
USP39-220ENST00000613444 MFSD10Q14728 455 aa15.63■□□□□ 0.09
USP39-220ENST00000613444 ARID5BQ14865 1188 aa15.63■□□□□ 0.09
USP39-220ENST00000613444 CCDC40Q4G0X9 1142 aa15.63■□□□□ 0.09
USP39-220ENST00000613444 DEPTORQ8TB45 409 aa15.63■□□□□ 0.09
USP39-220ENST00000613444 TRIM44Q96DX7 344 aaPredicted RBP15.63■□□□□ 0.09
USP39-220ENST00000613444 MKNK1Q9BUB5 465 aa15.63■□□□□ 0.09
USP39-220ENST00000613444 KCNF1Q9H3M0 494 aa15.63■□□□□ 0.09
USP39-220ENST00000613444 TMEM134Q9H6X4 195 aa15.63■□□□□ 0.09
USP39-220ENST00000613444 EXOC7Q9UPT5 735 aa15.63■□□□□ 0.09
USP39-220ENST00000613444 ITIH6Q6UXX5 1313 aa15.63■□□□□ 0.09
USP39-220ENST00000613444 ADAMTS4O75173 837 aa15.63■□□□□ 0.09
USP39-220ENST00000613444 SMIM10L2AP0DMW4 78 aa15.63■□□□□ 0.09
USP39-220ENST00000613444 SMIM10L2BP0DMW5 78 aa15.63■□□□□ 0.09
USP39-220ENST00000613444 PSEN2P49810 448 aa15.63■□□□□ 0.09
USP39-220ENST00000613444 DNM2P50570 870 aa15.63■□□□□ 0.09
USP39-220ENST00000613444 ADAM17P78536 824 aa15.63■□□□□ 0.09
USP39-220ENST00000613444 UBXN1Q04323 297 aa15.63■□□□□ 0.09
USP39-220ENST00000613444 BRDTQ58F21 947 aaPredicted RBP15.63■□□□□ 0.09
USP39-220ENST00000613444 CEP135Q66GS9 1140 aa15.63■□□□□ 0.09
USP39-220ENST00000613444 METTL13Q8N6R0 699 aa15.63■□□□□ 0.09
USP39-220ENST00000613444 RETREG2Q8NC44 543 aa15.63■□□□□ 0.09
USP39-220ENST00000613444 LMBR1Q8WVP7 490 aa15.63■□□□□ 0.09
USP39-220ENST00000613444 CCDC113Q9H0I3 377 aa15.63■□□□□ 0.09
USP39-220ENST00000613444 NDST4Q9H3R1 872 aa15.63■□□□□ 0.09
USP39-220ENST00000613444 SETD4Q9NVD3 440 aa15.63■□□□□ 0.09
USP39-220ENST00000613444 FRMPD3Q5JV73 1810 aa15.63■□□□□ 0.09
USP39-220ENST00000613444 A0A1W2PQC6 194 aa15.62■□□□□ 0.09
USP39-220ENST00000613444 PGK1P00558 417 aa15.62■□□□□ 0.09
USP39-220ENST00000613444 PIGRP01833 764 aa15.62■□□□□ 0.09
USP39-220ENST00000613444 MYL3P08590 195 aa15.62■□□□□ 0.09
USP39-220ENST00000613444 C6orf222P0C671 652 aaPredicted RBP15.62■□□□□ 0.09
USP39-220ENST00000613444 CYP2J2P51589 502 aa15.62■□□□□ 0.09
USP39-220ENST00000613444 RHPN2Q8IUC4 686 aa15.62■□□□□ 0.09
USP39-220ENST00000613444 ZSWIM2Q8NEG5 633 aa15.62■□□□□ 0.09
USP39-220ENST00000613444 RAET1EQ8TD07 263 aa15.62■□□□□ 0.09
USP39-220ENST00000613444 PPP1R13LQ8WUF5 828 aa15.62■□□□□ 0.09
USP39-220ENST00000613444 ZNF830Q96NB3 372 aaPredicted RBP15.62■□□□□ 0.09
USP39-220ENST00000613444 NRCAMQ92823 1304 aa15.62■□□□□ 0.09
USP39-220ENST00000613444 MBLAC1A4D2B0 266 aaPredicted RBP15.62■□□□□ 0.09
USP39-220ENST00000613444 RRN3P2A6NIE6 340 aa15.62■□□□□ 0.09
USP39-220ENST00000613444 K7ERI5 159 aa15.62■□□□□ 0.09
USP39-220ENST00000613444 RARBP10826 455 aa15.62■□□□□ 0.09
USP39-220ENST00000613444 HSPA6P17066 643 aa15.62■□□□□ 0.09
USP39-220ENST00000613444 HOXC8P31273 242 aa15.62■□□□□ 0.09
USP39-220ENST00000613444 ARMCX5Q6P1M9 558 aa15.62■□□□□ 0.09
USP39-220ENST00000613444 RNF149Q8NC42 400 aa15.62■□□□□ 0.09
USP39-220ENST00000613444 CACTINQ8WUQ7 758 aaKnown RBP15.62■□□□□ 0.09
USP39-220ENST00000613444 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.62■□□□□ 0.09
USP39-220ENST00000613444 HSPBP1Q9NZL4 362 aa15.62■□□□□ 0.09
USP39-220ENST00000613444 ARMCX3Q9UH62 379 aaPredicted RBP15.62■□□□□ 0.09
USP39-220ENST00000613444 TSKSQ9UJT2 592 aa15.62■□□□□ 0.09
USP39-220ENST00000613444 USP20Q9Y2K6 914 aa15.62■□□□□ 0.09
USP39-220ENST00000613444 PHLPP2Q6ZVD8 1323 aa15.61■□□□□ 0.09
USP39-220ENST00000613444 ASAP2O43150 1006 aa15.61■□□□□ 0.09
USP39-220ENST00000613444 SRGAP2CP0DJJ0 459 aa15.61■□□□□ 0.09
USP39-220ENST00000613444 EPB41P11171 864 aaKnown RBP15.61■□□□□ 0.09
USP39-220ENST00000613444 PSMC2P35998 433 aaKnown RBP15.61■□□□□ 0.09
USP39-220ENST00000613444 GNASQ5JWF2 1037 aa15.61■□□□□ 0.09
USP39-220ENST00000613444 KIAA0319LQ8IZA0 1049 aa15.61■□□□□ 0.09
USP39-220ENST00000613444 KLHDC9Q8NEP7 349 aa15.61■□□□□ 0.09
USP39-220ENST00000613444 ERGIC2Q96RQ1 377 aa15.61■□□□□ 0.09
USP39-220ENST00000613444 PCIF1Q9H4Z3 704 aa15.61■□□□□ 0.09
USP39-220ENST00000613444 METTL14Q9HCE5 456 aaKnown RBP15.61■□□□□ 0.09
USP39-220ENST00000613444 STYXL1Q9Y6J8 313 aa15.61■□□□□ 0.09
USP39-220ENST00000613444 MSCO60682 206 aa15.6■□□□□ 0.09
USP39-220ENST00000613444 KPNA6O60684 536 aa15.6■□□□□ 0.09
USP39-220ENST00000613444 MCCD1P59942 119 aaPredicted RBP15.6■□□□□ 0.09
USP39-220ENST00000613444 MAP2K1Q02750 393 aaPredicted RBP15.6■□□□□ 0.09
USP39-220ENST00000613444 POU5F1BQ06416 359 aa15.6■□□□□ 0.09
USP39-220ENST00000613444 CCSAPQ6IQ19 270 aaPredicted RBP15.6■□□□□ 0.09
USP39-220ENST00000613444 LRRC8AQ8IWT6 810 aa15.6■□□□□ 0.09
USP39-220ENST00000613444 FAM186BQ8IYM0 893 aa15.6■□□□□ 0.09
USP39-220ENST00000613444 SLC35C1Q96A29 364 aa15.6■□□□□ 0.09
USP39-220ENST00000613444 NFKBIZQ9BYH8 718 aa15.6■□□□□ 0.09
USP39-220ENST00000613444 IFT122Q9HBG6 1241 aa15.6■□□□□ 0.09
USP39-220ENST00000613444 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.6■□□□□ 0.09
USP39-220ENST00000613444 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.6■□□□□ 0.092e-8■■■□□ 16.1
USP39-220ENST00000613444 TTLL13PA6NNM8 815 aa15.6■□□□□ 0.09
USP39-220ENST00000613444 HNRNPDLO14979 420 aaKnown RBP15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms