RNA–Protein interactions for RNA: ENST00000595523.5

SHKBP1-206, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-206ENST00000595523 CLLU1OSQ5K130 101 aa12.2□□□□□ -0.46
SHKBP1-206ENST00000595523 UBXN11Q5T124 520 aa12.2□□□□□ -0.46
SHKBP1-206ENST00000595523 KRT79Q5XKE5 535 aa12.2□□□□□ -0.46
SHKBP1-206ENST00000595523 MCPH1Q8NEM0 835 aa12.2□□□□□ -0.46
SHKBP1-206ENST00000595523 LRRC15Q8TF66 581 aa12.2□□□□□ -0.46
SHKBP1-206ENST00000595523 PPM1EQ8WY54 764 aa12.2□□□□□ -0.46
SHKBP1-206ENST00000595523 POLD4Q9HCU8 107 aa12.2□□□□□ -0.46
SHKBP1-206ENST00000595523 DACT1Q9NYF0 836 aa12.2□□□□□ -0.46
SHKBP1-206ENST00000595523 CLIC4Q9Y696 253 aa12.2□□□□□ -0.46
SHKBP1-206ENST00000595523 STK24Q9Y6E0 443 aa12.2□□□□□ -0.46
SHKBP1-206ENST00000595523 C5orf42Q9H799 3197 aa12.2□□□□□ -0.46
SHKBP1-206ENST00000595523 MUC3AQ02505 3323 aa12.2□□□□□ -0.46
SHKBP1-206ENST00000595523 TBKBP1A7MCY6 615 aa12.19□□□□□ -0.46
SHKBP1-206ENST00000595523 MEIS3P2A8K0S8 358 aa12.19□□□□□ -0.46
SHKBP1-206ENST00000595523 TSPAN1O60635 241 aa12.19□□□□□ -0.46
SHKBP1-206ENST00000595523 EYA4O95677 639 aa12.19□□□□□ -0.46
SHKBP1-206ENST00000595523 CTNNB1P35222 781 aa12.19□□□□□ -0.46
SHKBP1-206ENST00000595523 TFDP1Q14186 410 aa12.19□□□□□ -0.46
SHKBP1-206ENST00000595523 TMEM119Q4V9L6 283 aa12.19□□□□□ -0.46
SHKBP1-206ENST00000595523 CDCA2Q69YH5 1023 aaPredicted RBP12.19□□□□□ -0.46
SHKBP1-206ENST00000595523 TWF2Q6IBS0 349 aaKnown RBP12.19□□□□□ -0.46
SHKBP1-206ENST00000595523 LRRC55Q6ZSA7 311 aa12.19□□□□□ -0.46
SHKBP1-206ENST00000595523 MICALL1Q8N3F8 863 aa12.19□□□□□ -0.46
SHKBP1-206ENST00000595523 CASD1Q96PB1 797 aa12.19□□□□□ -0.46
SHKBP1-206ENST00000595523 RUSC1Q9BVN2 902 aa12.19□□□□□ -0.46
SHKBP1-206ENST00000595523 NFKBIZQ9BYH8 718 aa12.19□□□□□ -0.46
SHKBP1-206ENST00000595523 CWH43Q9H720 699 aa12.19□□□□□ -0.46
SHKBP1-206ENST00000595523 TCF20Q9UGU0 1960 aaKnown RBP12.19□□□□□ -0.46
SHKBP1-206ENST00000595523 CITO14578 2027 aa12.18□□□□□ -0.46
SHKBP1-206ENST00000595523 GRM6O15303 877 aa12.18□□□□□ -0.46
SHKBP1-206ENST00000595523 B4GALT5O43286 388 aa12.18□□□□□ -0.46
SHKBP1-206ENST00000595523 GTPBP6O43824 516 aaPredicted RBP12.18□□□□□ -0.46
SHKBP1-206ENST00000595523 EOMESO95936 686 aa12.18□□□□□ -0.46
SHKBP1-206ENST00000595523 BMP15O95972 392 aa12.18□□□□□ -0.46
SHKBP1-206ENST00000595523 EDN1P05305 212 aa12.18□□□□□ -0.46
SHKBP1-206ENST00000595523 MAPK7Q13164 816 aa12.18□□□□□ -0.46
SHKBP1-206ENST00000595523 GPM6BQ13491 265 aa12.18□□□□□ -0.46
SHKBP1-206ENST00000595523 DAW1Q8N136 415 aa12.18□□□□□ -0.46
SHKBP1-206ENST00000595523 RNF169Q8NCN4 708 aa12.18□□□□□ -0.46
SHKBP1-206ENST00000595523 HELQQ8TDG4 1101 aa12.18□□□□□ -0.46
SHKBP1-206ENST00000595523 LPPQ93052 612 aa12.18□□□□□ -0.46
SHKBP1-206ENST00000595523 CPB2Q96IY4 423 aa12.18□□□□□ -0.46
SHKBP1-206ENST00000595523 USP28Q96RU2 1077 aa12.18□□□□□ -0.46
SHKBP1-206ENST00000595523 PLIN2Q99541 437 aa12.18□□□□□ -0.46
SHKBP1-206ENST00000595523 TMEM117Q9H0C3 514 aa12.18□□□□□ -0.46
SHKBP1-206ENST00000595523 FAM105AQ9NUU6 356 aa12.18□□□□□ -0.46
SHKBP1-206ENST00000595523 TYW1Q9NV66 732 aaKnown RBP12.18□□□□□ -0.46
SHKBP1-206ENST00000595523 RNF216Q9NWF9 866 aaPredicted RBP12.18□□□□□ -0.46
SHKBP1-206ENST00000595523 LMCD1Q9NZU5 365 aa12.18□□□□□ -0.46
SHKBP1-206ENST00000595523 DNM3Q9UQ16 869 aa12.18□□□□□ -0.46
SHKBP1-206ENST00000595523 RWDD3Q9Y3V2 267 aa12.18□□□□□ -0.46
SHKBP1-206ENST00000595523 PDCD11Q14690 1871 aaKnown RBP12.18□□□□□ -0.46
SHKBP1-206ENST00000595523 LRRIQ4A6NIV6 560 aa12.17□□□□□ -0.46
SHKBP1-206ENST00000595523 TTLL13PA6NNM8 815 aa12.17□□□□□ -0.46
SHKBP1-206ENST00000595523 INO80B-WBP1J3KQ70 363 aa12.17□□□□□ -0.46
SHKBP1-206ENST00000595523 ZNF623O75123 536 aa12.17□□□□□ -0.46
SHKBP1-206ENST00000595523 ITGB1P05556 798 aa12.17□□□□□ -0.46
SHKBP1-206ENST00000595523 RB1P06400 928 aa12.17□□□□□ -0.46
SHKBP1-206ENST00000595523 ARF4P18085 180 aaPredicted RBP12.17□□□□□ -0.46
SHKBP1-206ENST00000595523 DNAJB1P25685 340 aa12.17□□□□□ -0.46
SHKBP1-206ENST00000595523 MARCKSP29966 332 aaPredicted RBP12.17□□□□□ -0.46
SHKBP1-206ENST00000595523 PKP1Q13835 747 aa12.17□□□□□ -0.46
SHKBP1-206ENST00000595523 CAMK1Q14012 370 aa12.17□□□□□ -0.46
SHKBP1-206ENST00000595523 ZRSR1Q15695 479 aaKnown RBP12.17□□□□□ -0.46
SHKBP1-206ENST00000595523 LONRF3Q496Y0 759 aa12.17□□□□□ -0.46
SHKBP1-206ENST00000595523 RINT1Q6NUQ1 792 aa12.17□□□□□ -0.46
SHKBP1-206ENST00000595523 C1orf186Q6ZWK4 172 aa12.17□□□□□ -0.46
SHKBP1-206ENST00000595523 USP49Q70CQ1 688 aa12.17□□□□□ -0.46
SHKBP1-206ENST00000595523 CABP7Q86V35 215 aa12.17□□□□□ -0.46
SHKBP1-206ENST00000595523 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.17□□□□□ -0.46
SHKBP1-206ENST00000595523 SPRYD3Q8NCJ5 442 aa12.17□□□□□ -0.46
SHKBP1-206ENST00000595523 AK8Q96MA6 479 aa12.17□□□□□ -0.46
SHKBP1-206ENST00000595523 C11orf84Q9BUA3 381 aaPredicted RBP12.17□□□□□ -0.46
SHKBP1-206ENST00000595523 KIFC3Q9BVG8 833 aa12.17□□□□□ -0.46
SHKBP1-206ENST00000595523 PLVAPQ9BX97 442 aa12.17□□□□□ -0.46
SHKBP1-206ENST00000595523 EIF2AQ9BY44 585 aaKnown RBP12.17□□□□□ -0.46
SHKBP1-206ENST00000595523 CCDC113Q9H0I3 377 aa12.17□□□□□ -0.46
SHKBP1-206ENST00000595523 ZSCAN16Q9H4T2 348 aaPredicted RBP12.17□□□□□ -0.46
SHKBP1-206ENST00000595523 FBXO2Q9UK22 296 aaPredicted RBP12.17□□□□□ -0.46
SHKBP1-206ENST00000595523 PCDHB2Q9Y5E7 798 aa12.17□□□□□ -0.46
SHKBP1-206ENST00000595523 HOXA2O43364 376 aa12.16□□□□□ -0.46
SHKBP1-206ENST00000595523 ERLIN2O94905 339 aa12.16□□□□□ -0.46
SHKBP1-206ENST00000595523 LONP1P36776 959 aaKnown RBP12.16□□□□□ -0.46
SHKBP1-206ENST00000595523 NAMPTP43490 491 aa12.16□□□□□ -0.46
SHKBP1-206ENST00000595523 RAB27AP51159 221 aa12.16□□□□□ -0.46
SHKBP1-206ENST00000595523 SLC12A3P55017 1021 aa12.16□□□□□ -0.46
SHKBP1-206ENST00000595523 CEBPZQ03701 1054 aaKnown RBP12.16□□□□□ -0.46
SHKBP1-206ENST00000595523 PCBP1Q15365 356 aaKnown RBP eCLIP12.16□□□□□ -0.46
SHKBP1-206ENST00000595523 SPECC1Q5M775 1068 aa12.16□□□□□ -0.46
SHKBP1-206ENST00000595523 PPP4R3CPQ6ZMV5 832 aa12.16□□□□□ -0.46
SHKBP1-206ENST00000595523 AGMOQ6ZNB7 445 aa12.16□□□□□ -0.46
SHKBP1-206ENST00000595523 MRPL10Q7Z7H8 261 aaKnown RBP12.16□□□□□ -0.46
SHKBP1-206ENST00000595523 SYT2Q8N9I0 419 aaPredicted RBP12.16□□□□□ -0.46
SHKBP1-206ENST00000595523 KLHL23Q8NBE8 558 aa12.16□□□□□ -0.46
SHKBP1-206ENST00000595523 COLGALT1Q8NBJ5 622 aa12.16□□□□□ -0.46
SHKBP1-206ENST00000595523 SMG8Q8ND04 991 aaKnown RBP12.16□□□□□ -0.46
SHKBP1-206ENST00000595523 SLC17A8Q8NDX2 589 aa12.16□□□□□ -0.46
SHKBP1-206ENST00000595523 KIFAP3Q92845 792 aa12.16□□□□□ -0.46
SHKBP1-206ENST00000595523 P2RX5Q93086 422 aa12.16□□□□□ -0.46
SHKBP1-206ENST00000595523 MRPL38Q96DV4 380 aaKnown RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms