RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 PCIF1Q9H4Z3 704 aa21.42■■□□□ 1.02
CLIP3-206ENST00000593074 INTUQ9ULD6 942 aa21.42■■□□□ 1.02
CLIP3-206ENST00000593074 PAPPA2Q9BXP8 1791 aa21.42■■□□□ 1.02
CLIP3-206ENST00000593074 UTRNP46939 3433 aa21.41■■□□□ 1.02
CLIP3-206ENST00000593074 DDX3XO00571 662 aaKnown RBP eCLIP21.41■■□□□ 1.02
CLIP3-206ENST00000593074 P4HA2O15460 535 aa21.41■■□□□ 1.02
CLIP3-206ENST00000593074 N4BP1O75113 896 aaKnown RBP21.41■■□□□ 1.02
CLIP3-206ENST00000593074 STBD1O95210 358 aa21.41■■□□□ 1.02
CLIP3-206ENST00000593074 VAMP7P51809 220 aa21.41■■□□□ 1.02
CLIP3-206ENST00000593074 USP50Q70EL3 339 aaPredicted RBP21.41■■□□□ 1.02
CLIP3-206ENST00000593074 ANKRD35Q8N283 1001 aa21.41■■□□□ 1.02
CLIP3-206ENST00000593074 TMEM161BQ8NDZ6 487 aa21.41■■□□□ 1.02
CLIP3-206ENST00000593074 ATP6V0A1Q93050 837 aa21.41■■□□□ 1.02
CLIP3-206ENST00000593074 PSMB7Q99436 277 aa21.41■■□□□ 1.02
CLIP3-206ENST00000593074 SYT11Q9BT88 431 aa21.41■■□□□ 1.02
CLIP3-206ENST00000593074 ZNF862O60290 1169 aa21.41■■□□□ 1.02
CLIP3-206ENST00000593074 DKC1O60832 514 aaKnown RBP eCLIP21.41■■□□□ 1.02
CLIP3-206ENST00000593074 DLG4P78352 724 aa21.41■■□□□ 1.02
CLIP3-206ENST00000593074 SMC1AQ14683 1233 aaKnown RBP21.41■■□□□ 1.02
CLIP3-206ENST00000593074 CCDC181Q5TID7 509 aa21.41■■□□□ 1.02
CLIP3-206ENST00000593074 OTUD6AQ7L8S5 288 aa21.41■■□□□ 1.02
CLIP3-206ENST00000593074 TRMT1LQ7Z2T5 733 aaKnown RBP21.41■■□□□ 1.02
CLIP3-206ENST00000593074 ERO1BQ86YB8 467 aa21.41■■□□□ 1.02
CLIP3-206ENST00000593074 ANKRD13AQ8IZ07 590 aa21.41■■□□□ 1.02
CLIP3-206ENST00000593074 PROCA1Q8NCQ7 364 aaPredicted RBP21.41■■□□□ 1.02
CLIP3-206ENST00000593074 DNERQ8NFT8 737 aa21.41■■□□□ 1.02
CLIP3-206ENST00000593074 SLC30A5Q8TAD4 765 aa21.41■■□□□ 1.02
CLIP3-206ENST00000593074 RUBCNQ92622 972 aa21.41■■□□□ 1.02
CLIP3-206ENST00000593074 JPH1Q9HDC5 661 aaPredicted RBP21.41■■□□□ 1.02
CLIP3-206ENST00000593074 GABBR1Q9UBS5 961 aa21.41■■□□□ 1.02
CLIP3-206ENST00000593074 FBXO40Q9UH90 709 aa21.41■■□□□ 1.02
CLIP3-206ENST00000593074 A0A0G2JMZ2 1700 aa21.4■■□□□ 1.02
CLIP3-206ENST00000593074 SPATA31C2B4DYI2 1134 aa21.4■■□□□ 1.02
CLIP3-206ENST00000593074 IRF6O14896 467 aa21.4■■□□□ 1.02
CLIP3-206ENST00000593074 FTCDO95954 541 aa21.4■■□□□ 1.02
CLIP3-206ENST00000593074 NPTX2P47972 431 aa21.4■■□□□ 1.02
CLIP3-206ENST00000593074 C1orf220Q5T0J3 134 aa21.4■■□□□ 1.02
CLIP3-206ENST00000593074 RIOX2Q8IUF8 465 aa21.4■■□□□ 1.02
CLIP3-206ENST00000593074 MAP4K3Q8IVH8 894 aa21.4■■□□□ 1.02
CLIP3-206ENST00000593074 KIFAP3Q92845 792 aa21.4■■□□□ 1.02
CLIP3-206ENST00000593074 CDCA5Q96FF9 252 aa21.4■■□□□ 1.02
CLIP3-206ENST00000593074 OTUD5Q96G74 571 aa21.4■■□□□ 1.02
CLIP3-206ENST00000593074 SUGCTQ9HAC7 445 aa21.4■■□□□ 1.02
CLIP3-206ENST00000593074 C17orf75Q9HAS0 396 aa21.4■■□□□ 1.02
CLIP3-206ENST00000593074 BTBD7Q9P203 1132 aa21.4■■□□□ 1.02
CLIP3-206ENST00000593074 EXOC7Q9UPT5 735 aa21.4■■□□□ 1.02
CLIP3-206ENST00000593074 PTPRFP10586 1907 aa21.4■■□□□ 1.02
CLIP3-206ENST00000593074 EMSYQ7Z589 1322 aa21.4■■□□□ 1.02
CLIP3-206ENST00000593074 A0A0A6YYK5 440 aaPredicted RBP21.4■■□□□ 1.02
CLIP3-206ENST00000593074 PSAPP07602 524 aa21.4■■□□□ 1.02
CLIP3-206ENST00000593074 PAFAH1B1P43034 410 aa21.4■■□□□ 1.02
CLIP3-206ENST00000593074 DMTNQ08495 405 aa21.4■■□□□ 1.02
CLIP3-206ENST00000593074 DMP1Q13316 513 aaPredicted RBP21.4■■□□□ 1.02
CLIP3-206ENST00000593074 STXBP2Q15833 593 aa21.4■■□□□ 1.02
CLIP3-206ENST00000593074 IFI16Q16666 785 aaKnown RBP21.4■■□□□ 1.02
CLIP3-206ENST00000593074 CCDC70Q6NSX1 233 aa21.4■■□□□ 1.02
CLIP3-206ENST00000593074 LNX1Q8TBB1 728 aaPredicted RBP21.4■■□□□ 1.02
CLIP3-206ENST00000593074 ZC3H15Q8WU90 426 aaKnown RBP21.4■■□□□ 1.02
CLIP3-206ENST00000593074 SPIRE2Q8WWL2 714 aa21.4■■□□□ 1.02
CLIP3-206ENST00000593074 SLC9A2Q9UBY0 812 aa21.4■■□□□ 1.02
CLIP3-206ENST00000593074 TBX20Q9UMR3 447 aa21.4■■□□□ 1.02
CLIP3-206ENST00000593074 A0A0G2JLL6 359 aaPredicted RBP21.39■■□□□ 1.01
CLIP3-206ENST00000593074 CXCL11O14625 94 aa21.39■■□□□ 1.01
CLIP3-206ENST00000593074 PMM2O15305 246 aa21.39■■□□□ 1.01
CLIP3-206ENST00000593074 SMTNP53814 917 aa21.39■■□□□ 1.01
CLIP3-206ENST00000593074 PPP3CAQ08209 521 aa21.39■■□□□ 1.01
CLIP3-206ENST00000593074 TTLL12Q14166 644 aaPredicted RBP21.39■■□□□ 1.01
CLIP3-206ENST00000593074 MAP9Q49MG5 647 aa21.39■■□□□ 1.01
CLIP3-206ENST00000593074 EPC2Q52LR7 807 aa21.39■■□□□ 1.01
CLIP3-206ENST00000593074 PHLDB3Q6NSJ2 640 aa21.39■■□□□ 1.01
CLIP3-206ENST00000593074 PRRT2Q7Z6L0 340 aaPredicted RBP21.39■■□□□ 1.01
CLIP3-206ENST00000593074 LRRC57Q8N9N7 239 aa21.39■■□□□ 1.01
CLIP3-206ENST00000593074 L3MBTL3Q96JM7 780 aaPredicted RBP21.39■■□□□ 1.01
CLIP3-206ENST00000593074 CLMNQ96JQ2 1002 aa21.39■■□□□ 1.01
CLIP3-206ENST00000593074 NTPCRQ9BSD7 190 aaKnown RBP21.39■■□□□ 1.01
CLIP3-206ENST00000593074 DOCK5Q9H7D0 1870 aa21.39■■□□□ 1.01
CLIP3-206ENST00000593074 PFASO15067 1338 aa21.39■■□□□ 1.01
CLIP3-206ENST00000593074 H2AFZP0C0S5 128 aa21.38■■□□□ 1.01
CLIP3-206ENST00000593074 CCDC172P0C7W6 258 aa21.38■■□□□ 1.01
CLIP3-206ENST00000593074 IRX3P78415 501 aaPredicted RBP21.38■■□□□ 1.01
CLIP3-206ENST00000593074 TERF2Q15554 542 aa21.38■■□□□ 1.01
CLIP3-206ENST00000593074 CFAP221Q4G0U5 840 aa21.38■■□□□ 1.01
CLIP3-206ENST00000593074 H2AFVQ71UI9 128 aa21.38■■□□□ 1.01
CLIP3-206ENST00000593074 ZSWIM2Q8NEG5 633 aa21.38■■□□□ 1.01
CLIP3-206ENST00000593074 PLEKHO2Q8TD55 490 aa21.38■■□□□ 1.01
CLIP3-206ENST00000593074 CEP170P1Q96L14 293 aa21.38■■□□□ 1.01
CLIP3-206ENST00000593074 EHD2Q9NZN4 543 aa21.38■■□□□ 1.01
CLIP3-206ENST00000593074 EIF3JO75822 258 aaKnown RBP21.38■■□□□ 1.01
CLIP3-206ENST00000593074 EPHX2P34913 555 aa21.38■■□□□ 1.01
CLIP3-206ENST00000593074 CETN1Q12798 172 aa21.38■■□□□ 1.01
CLIP3-206ENST00000593074 CASP8Q14790 479 aa21.38■■□□□ 1.01
CLIP3-206ENST00000593074 KIF22Q14807 665 aa21.38■■□□□ 1.01
CLIP3-206ENST00000593074 SWSAP1Q6NVH7 229 aa21.38■■□□□ 1.01
CLIP3-206ENST00000593074 PDLIM7Q9NR12 457 aa21.38■■□□□ 1.01
CLIP3-206ENST00000593074 SMARCAL1Q9NZC9 954 aa21.38■■□□□ 1.01
CLIP3-206ENST00000593074 USP20Q9Y2K6 914 aa21.38■■□□□ 1.01
CLIP3-206ENST00000593074 OTOFQ9HC10 1997 aa21.37■■□□□ 1.01
CLIP3-206ENST00000593074 SPDYE5A6NIY4 337 aa21.37■■□□□ 1.01
CLIP3-206ENST00000593074 CCDC169A6NNP5 214 aa21.37■■□□□ 1.01
CLIP3-206ENST00000593074 CES2O00748 559 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms