RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 MTMR9Q96QG7 549 aa16.2■□□□□ 0.18
SMARCE1-216ENST00000580419 PPP1R16BQ96T49 567 aa16.2■□□□□ 0.18
SMARCE1-216ENST00000580419 KCNH6Q9H252 994 aa16.2■□□□□ 0.18
SMARCE1-216ENST00000580419 ZMYM2Q9UBW7 1377 aa16.2■□□□□ 0.18
SMARCE1-216ENST00000580419 INPPL1O15357 1258 aa16.19■□□□□ 0.18
SMARCE1-216ENST00000580419 MARCH6O60337 910 aa16.19■□□□□ 0.18
SMARCE1-216ENST00000580419 GTF2F1P35269 517 aaKnown RBP eCLIP16.19■□□□□ 0.18
SMARCE1-216ENST00000580419 ERVFC1P60507 584 aa16.19■□□□□ 0.18
SMARCE1-216ENST00000580419 NR5A1Q13285 461 aa16.19■□□□□ 0.18
SMARCE1-216ENST00000580419 TRIM29Q14134 588 aa16.19■□□□□ 0.18
SMARCE1-216ENST00000580419 EARS2Q5JPH6 523 aaKnown RBP16.19■□□□□ 0.18
SMARCE1-216ENST00000580419 GLB1LQ6UWU2 654 aa16.19■□□□□ 0.18
SMARCE1-216ENST00000580419 FERMT3Q86UX7 667 aa16.19■□□□□ 0.18
SMARCE1-216ENST00000580419 PRPF31Q8WWY3 499 aaKnown RBP16.19■□□□□ 0.18
SMARCE1-216ENST00000580419 UBN1Q9NPG3 1134 aa16.19■□□□□ 0.18
SMARCE1-216ENST00000580419 GJB4Q9NTQ9 266 aa16.19■□□□□ 0.18
SMARCE1-216ENST00000580419 FAM105AQ9NUU6 356 aa16.19■□□□□ 0.18
SMARCE1-216ENST00000580419 KANSL3Q9P2N6 904 aa16.19■□□□□ 0.18
SMARCE1-216ENST00000580419 WRAP73Q9P2S5 460 aaPredicted RBP16.19■□□□□ 0.18
SMARCE1-216ENST00000580419 LIMCH1Q9UPQ0 1083 aa16.19■□□□□ 0.18
SMARCE1-216ENST00000580419 TECTAO75443 2155 aa16.19■□□□□ 0.18
SMARCE1-216ENST00000580419 TMEM150BA6NC51 233 aa16.18■□□□□ 0.18
SMARCE1-216ENST00000580419 LOC730098B7Z3J9 87 aa16.18■□□□□ 0.18
SMARCE1-216ENST00000580419 LINC01565O15544 149 aa16.18■□□□□ 0.18
SMARCE1-216ENST00000580419 NEMFO60524 1076 aa16.18■□□□□ 0.18
SMARCE1-216ENST00000580419 DGAT1O75907 488 aa16.18■□□□□ 0.18
SMARCE1-216ENST00000580419 MUTP22033 750 aa16.18■□□□□ 0.18
SMARCE1-216ENST00000580419 NPEPPSP55786 919 aa16.18■□□□□ 0.18
SMARCE1-216ENST00000580419 LAMTOR4Q0VGL1 99 aa16.18■□□□□ 0.18
SMARCE1-216ENST00000580419 EMC2Q15006 297 aa16.18■□□□□ 0.18
SMARCE1-216ENST00000580419 CALCRLQ16602 461 aa16.18■□□□□ 0.18
SMARCE1-216ENST00000580419 TWF2Q6IBS0 349 aaKnown RBP16.18■□□□□ 0.18
SMARCE1-216ENST00000580419 EP400NLQ6ZTU2 488 aa16.18■□□□□ 0.18
SMARCE1-216ENST00000580419 CATSPER4Q7RTX7 472 aa16.18■□□□□ 0.18
SMARCE1-216ENST00000580419 DIS3L2Q8IYB7 885 aaKnown RBP16.18■□□□□ 0.18
SMARCE1-216ENST00000580419 MRPL43Q8N983 215 aaKnown RBP16.18■□□□□ 0.18
SMARCE1-216ENST00000580419 MICAL1Q8TDZ2 1067 aa16.18■□□□□ 0.18
SMARCE1-216ENST00000580419 IGFLR1Q9H665 355 aa16.18■□□□□ 0.18
SMARCE1-216ENST00000580419 PIN4Q9Y237 131 aaKnown RBP16.18■□□□□ 0.18
SMARCE1-216ENST00000580419 HCN4Q9Y3Q4 1203 aa16.18■□□□□ 0.18
SMARCE1-216ENST00000580419 BTBD18B2RXH4 712 aa16.17■□□□□ 0.18
SMARCE1-216ENST00000580419 LARGE1O95461 756 aa16.17■□□□□ 0.18
SMARCE1-216ENST00000580419 HOXA11P31270 313 aaPredicted RBP16.17■□□□□ 0.18
SMARCE1-216ENST00000580419 BCAR1P56945 870 aa16.17■□□□□ 0.18
SMARCE1-216ENST00000580419 SMC1AQ14683 1233 aaKnown RBP16.17■□□□□ 0.18
SMARCE1-216ENST00000580419 SAFBQ15424 915 aaKnown RBP eCLIP16.17■□□□□ 0.18
SMARCE1-216ENST00000580419 NOMO2Q5JPE7 1267 aa16.17■□□□□ 0.18
SMARCE1-216ENST00000580419 PLA2G4FQ68DD2 849 aa16.17■□□□□ 0.18
SMARCE1-216ENST00000580419 DDX53Q86TM3 631 aaKnown RBP16.17■□□□□ 0.18
SMARCE1-216ENST00000580419 NECAB1Q8N987 351 aa16.17■□□□□ 0.18
SMARCE1-216ENST00000580419 ZSCAN31Q96LW9 406 aaPredicted RBP16.17■□□□□ 0.18
SMARCE1-216ENST00000580419 NLRP4Q96MN2 994 aa16.17■□□□□ 0.18
SMARCE1-216ENST00000580419 MTRQ99707 1265 aa16.17■□□□□ 0.18
SMARCE1-216ENST00000580419 TCF25Q9BQ70 676 aa16.17■□□□□ 0.18
SMARCE1-216ENST00000580419 EIF2AK1Q9BQI3 630 aaKnown RBP16.17■□□□□ 0.18
SMARCE1-216ENST00000580419 PHF7Q9BWX1 381 aaPredicted RBP16.17■□□□□ 0.18
SMARCE1-216ENST00000580419 FOXP1Q9H334 677 aaPredicted RBP16.17■□□□□ 0.18
SMARCE1-216ENST00000580419 TTC12Q9H892 705 aaPredicted RBP16.17■□□□□ 0.18
SMARCE1-216ENST00000580419 SH2B1Q9NRF2 756 aaPredicted RBP16.17■□□□□ 0.18
SMARCE1-216ENST00000580419 RGL1Q9NZL6 768 aa16.17■□□□□ 0.18
SMARCE1-216ENST00000580419 ZDBF2Q9HCK1 2354 aa16.17■□□□□ 0.18
SMARCE1-216ENST00000580419 OFD1O75665 1012 aa16.16■□□□□ 0.18
SMARCE1-216ENST00000580419 C1RP00736 705 aa16.16■□□□□ 0.18
SMARCE1-216ENST00000580419 PLA2G5P39877 138 aa16.16■□□□□ 0.18
SMARCE1-216ENST00000580419 TRAPPC10P48553 1259 aa16.16■□□□□ 0.18
SMARCE1-216ENST00000580419 PTENP60484 403 aa16.16■□□□□ 0.18
SMARCE1-216ENST00000580419 HMGN5P82970 282 aaKnown RBP16.16■□□□□ 0.18
SMARCE1-216ENST00000580419 NCBP1Q09161 790 aaKnown RBP16.16■□□□□ 0.18
SMARCE1-216ENST00000580419 TFDP1Q14186 410 aa16.16■□□□□ 0.18
SMARCE1-216ENST00000580419 XKR9Q5GH70 373 aa16.16■□□□□ 0.18
SMARCE1-216ENST00000580419 NCAPH2Q6IBW4 605 aa16.16■□□□□ 0.18
SMARCE1-216ENST00000580419 BMP8AQ7Z5Y6 402 aa16.16■□□□□ 0.18
SMARCE1-216ENST00000580419 HELQQ8TDG4 1101 aa16.16■□□□□ 0.18
SMARCE1-216ENST00000580419 CASP10Q92851 521 aa16.16■□□□□ 0.18
SMARCE1-216ENST00000580419 TMEM169Q96HH4 297 aa16.16■□□□□ 0.18
SMARCE1-216ENST00000580419 DYDC2Q96IM9 177 aa16.16■□□□□ 0.18
SMARCE1-216ENST00000580419 TMEM175Q9BSA9 504 aa16.16■□□□□ 0.18
SMARCE1-216ENST00000580419 TUFT1Q9NNX1 390 aa16.16■□□□□ 0.18
SMARCE1-216ENST00000580419 HCSTQ9UBK5 93 aa16.16■□□□□ 0.18
SMARCE1-216ENST00000580419 PCDHB2Q9Y5E7 798 aa16.16■□□□□ 0.18
SMARCE1-216ENST00000580419 CSDE1O75534 798 aaKnown RBP16.15■□□□□ 0.18
SMARCE1-216ENST00000580419 NCLP19338 710 aaKnown RBP16.15■□□□□ 0.18
SMARCE1-216ENST00000580419 FGFR4P22455 802 aa16.15■□□□□ 0.18
SMARCE1-216ENST00000580419 ARL2P36404 184 aa16.15■□□□□ 0.18
SMARCE1-216ENST00000580419 ITIH3Q06033 890 aa16.15■□□□□ 0.18
SMARCE1-216ENST00000580419 ANKRD54Q6NXT1 300 aa16.15■□□□□ 0.18
SMARCE1-216ENST00000580419 TMC7Q7Z402 723 aa16.15■□□□□ 0.18
SMARCE1-216ENST00000580419 KSR1Q8IVT5 923 aa16.15■□□□□ 0.18
SMARCE1-216ENST00000580419 TPH2Q8IWU9 490 aa16.15■□□□□ 0.18
SMARCE1-216ENST00000580419 GPR65Q8IYL9 337 aa16.15■□□□□ 0.18
SMARCE1-216ENST00000580419 ZNF579Q8NAF0 562 aaKnown RBP16.15■□□□□ 0.18
SMARCE1-216ENST00000580419 RNF149Q8NC42 400 aa16.15■□□□□ 0.18
SMARCE1-216ENST00000580419 VN1R2Q8NFZ6 395 aa16.15■□□□□ 0.18
SMARCE1-216ENST00000580419 IGSF21Q96ID5 467 aa16.15■□□□□ 0.18
SMARCE1-216ENST00000580419 NECTIN4Q96NY8 510 aa16.15■□□□□ 0.18
SMARCE1-216ENST00000580419 SH2D3AQ9BRG2 576 aa16.15■□□□□ 0.18
SMARCE1-216ENST00000580419 S1PR5Q9H228 398 aa16.15■□□□□ 0.18
SMARCE1-216ENST00000580419 XPNPEP1Q9NQW7 623 aa16.15■□□□□ 0.18
SMARCE1-216ENST00000580419 ENTPD7Q9NQZ7 604 aa16.15■□□□□ 0.18
SMARCE1-216ENST00000580419 TBC1D13Q9NVG8 400 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms