RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, human

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIITA-208	ENST00000572665	LIG1	P18858	919 aa		10.8	□□□□□ -0.68
CIITA-208	ENST00000572665	APOBR	Q0VD83	1088 aa		10.8	□□□□□ -0.68
CIITA-208	ENST00000572665	VPS53	Q5VIR6	699 aa		10.8	□□□□□ -0.68
CIITA-208	ENST00000572665	IGF2-AS	Q6U949	168 aa		10.8	□□□□□ -0.68
CIITA-208	ENST00000572665	CXCL17	Q6UXB2	119 aa		10.8	□□□□□ -0.68
CIITA-208	ENST00000572665	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	10.8	□□□□□ -0.68
CIITA-208	ENST00000572665	RNF207	Q6ZRF8	634 aa		10.8	□□□□□ -0.68
CIITA-208	ENST00000572665	RPUSD2	Q8IZ73	545 aa	Known RBP	10.8	□□□□□ -0.68
CIITA-208	ENST00000572665	DNER	Q8NFT8	737 aa		10.8	□□□□□ -0.68
CIITA-208	ENST00000572665	FBXO27	Q8NI29	283 aa		10.8	□□□□□ -0.68
CIITA-208	ENST00000572665	MORC4	Q8TE76	937 aa		10.8	□□□□□ -0.68
CIITA-208	ENST00000572665	CHMP4C	Q96CF2	233 aa		10.8	□□□□□ -0.68
CIITA-208	ENST00000572665	WDR89	Q96FK6	387 aa	Predicted RBP	10.8	□□□□□ -0.68
CIITA-208	ENST00000572665	WDR19	Q8NEZ3	1342 aa		10.8	□□□□□ -0.68
CIITA-208	ENST00000572665		A0A0D9SFI3	127 aa		10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	FOXP2	O15409	715 aa		10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	ADCY6	O43306	1168 aa		10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	KPNA6	O60684	536 aa		10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	CD4	P01730	458 aa		10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	PDHB	P11177	359 aa		10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	ALDH5A1	P51649	535 aa	Predicted RBP	10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	BEX3	Q00994	111 aa		10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	ARID5A	Q03989	594 aa		10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	NMI	Q13287	307 aa	Predicted RBP	10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	BAAT	Q14032	418 aa	Predicted RBP	10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	MPP2	Q14168	576 aa		10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	RAB30	Q15771	203 aa		10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	DUSP28	Q4G0W2	176 aa		10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	MUM1L1	Q5H9M0	696 aa		10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	TAPT1	Q6NXT6	567 aa		10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	EEPD1	Q7L9B9	569 aa		10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	DGKH	Q86XP1	1220 aa		10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	FBXO16	Q8IX29	292 aa	Predicted RBP	10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	TIFA	Q96CG3	184 aa		10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	FAM227B	Q96M60	508 aa		10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	WDR11	Q9BZH6	1224 aa		10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	LNPK	Q9C0E8	428 aa		10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	MRPL18	Q9H0U6	180 aa	Known RBP	10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	HIPK3	Q9H422	1215 aa		10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	IL23A	Q9NPF7	189 aa		10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	INCENP	Q9NQS7	918 aa		10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	DIAPH3	Q9NSV4	1193 aa		10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	CTNNA3	Q9UI47	895 aa		10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	MSRA	Q9UJ68	235 aa		10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	PCDHA4	Q9UN74	947 aa		10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	FRMPD2	Q68DX3	1309 aa	Predicted RBP	10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	LAMA4	Q16363	1823 aa		10.79	□□□□□ -0.68
CIITA-208	ENST00000572665	CTAGE5	O15320	804 aa		10.78	□□□□□ -0.68
CIITA-208	ENST00000572665	FGB	P02675	491 aa		10.78	□□□□□ -0.68
CIITA-208	ENST00000572665	PFKM	P08237	780 aa		10.78	□□□□□ -0.68
CIITA-208	ENST00000572665	CSF2RA	P15509	400 aa		10.78	□□□□□ -0.68
CIITA-208	ENST00000572665	ATF4	P18848	351 aa	Predicted RBP	10.78	□□□□□ -0.68
CIITA-208	ENST00000572665	SDS	P20132	328 aa		10.78	□□□□□ -0.68
CIITA-208	ENST00000572665	CALML3	P27482	149 aa		10.78	□□□□□ -0.68
CIITA-208	ENST00000572665	DNAJA1	P31689	397 aa	Known RBP	10.78	□□□□□ -0.68
CIITA-208	ENST00000572665	SLC16A2	P36021	539 aa		10.78	□□□□□ -0.68
CIITA-208	ENST00000572665	EPHB4	P54760	987 aa		10.78	□□□□□ -0.68
CIITA-208	ENST00000572665	SNAP25	P60880	206 aa		10.78	□□□□□ -0.68
CIITA-208	ENST00000572665	RPL6	Q02878	288 aa	Known RBP	10.78	□□□□□ -0.68
CIITA-208	ENST00000572665	ZNF543	Q08ER8	600 aa		10.78	□□□□□ -0.68
CIITA-208	ENST00000572665	PPP2R5B	Q15173	497 aa		10.78	□□□□□ -0.68
CIITA-208	ENST00000572665	SF3A1	Q15459	793 aa	Known RBP	10.78	□□□□□ -0.68
CIITA-208	ENST00000572665	TMEM240	Q5SV17	173 aa		10.78	□□□□□ -0.68
CIITA-208	ENST00000572665	ACAD11	Q709F0	780 aa		10.78	□□□□□ -0.68
CIITA-208	ENST00000572665	CHD1L	Q86WJ1	897 aa		10.78	□□□□□ -0.68
CIITA-208	ENST00000572665	SLITRK4	Q8IW52	837 aa		10.78	□□□□□ -0.68
CIITA-208	ENST00000572665	SCFD2	Q8WU76	684 aa		10.78	□□□□□ -0.68
CIITA-208	ENST00000572665	MYLIP	Q8WY64	445 aa		10.78	□□□□□ -0.68
CIITA-208	ENST00000572665	NKD1	Q969G9	470 aa		10.78	□□□□□ -0.68
CIITA-208	ENST00000572665	SCARF2	Q96GP6	870 aa	Predicted RBP	10.78	□□□□□ -0.68
CIITA-208	ENST00000572665	RUSC1	Q9BVN2	902 aa		10.78	□□□□□ -0.68
CIITA-208	ENST00000572665	TMPRSS13	Q9BYE2	586 aa		10.78	□□□□□ -0.68
CIITA-208	ENST00000572665	TTYH1	Q9H313	450 aa	Predicted RBP	10.78	□□□□□ -0.68
CIITA-208	ENST00000572665	KAT14	Q9H8E8	782 aa		10.78	□□□□□ -0.68
CIITA-208	ENST00000572665	MYH6	P13533	1939 aa		10.78	□□□□□ -0.68
CIITA-208	ENST00000572665	BPNT1	O95861	308 aa		10.77	□□□□□ -0.69
CIITA-208	ENST00000572665	SPATA31C1	P0DKV0	1188 aa		10.77	□□□□□ -0.69
CIITA-208	ENST00000572665	SNHG28	P0DPA3	235 aa		10.77	□□□□□ -0.69
CIITA-208	ENST00000572665	HAND2	P61296	217 aa		10.77	□□□□□ -0.69
CIITA-208	ENST00000572665	GRIK4	Q16099	956 aa		10.77	□□□□□ -0.69
CIITA-208	ENST00000572665	IMMT	Q16891	758 aa	Known RBP	10.77	□□□□□ -0.69
CIITA-208	ENST00000572665	ASPRV1	Q53RT3	343 aa		10.77	□□□□□ -0.69
CIITA-208	ENST00000572665	EXOSC6	Q5RKV6	272 aa	Known RBP	10.77	□□□□□ -0.69
CIITA-208	ENST00000572665	ZNF365	Q70YC5	407 aa		10.77	□□□□□ -0.69
CIITA-208	ENST00000572665	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	10.77	□□□□□ -0.69
CIITA-208	ENST00000572665	REC114	Q7Z4M0	266 aa		10.77	□□□□□ -0.69
CIITA-208	ENST00000572665	MCF2L2	Q86YR7	1114 aa		10.77	□□□□□ -0.69
CIITA-208	ENST00000572665	SMC5	Q8IY18	1101 aa		10.77	□□□□□ -0.69
CIITA-208	ENST00000572665	OR6J1	Q8NGC5	347 aa		10.77	□□□□□ -0.69
CIITA-208	ENST00000572665	HERVK_113	Q902F9	699 aa		10.77	□□□□□ -0.69
CIITA-208	ENST00000572665	MTG1	Q9BT17	334 aa	Predicted RBP	10.77	□□□□□ -0.69
CIITA-208	ENST00000572665	KRT23	Q9C075	422 aa		10.77	□□□□□ -0.69
CIITA-208	ENST00000572665	CNNM2	Q9H8M5	875 aa		10.77	□□□□□ -0.69
CIITA-208	ENST00000572665	PCDHGC5	Q9Y5F6	944 aa		10.77	□□□□□ -0.69
CIITA-208	ENST00000572665	LCT	P09848	1927 aa		10.77	□□□□□ -0.69
CIITA-208	ENST00000572665	ASTN1	O14525	1302 aa		10.77	□□□□□ -0.69
CIITA-208	ENST00000572665	MEGF11	A6BM72	1044 aa		10.76	□□□□□ -0.69
CIITA-208	ENST00000572665	NFIB	O00712	420 aa		10.76	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms