RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 TMEM87AQ8NBN3 555 aa16.66■□□□□ 0.26
CLN3-222ENST00000566083 CASP10Q92851 521 aa16.66■□□□□ 0.26
CLN3-222ENST00000566083 GTF3C6Q969F1 213 aa16.66■□□□□ 0.26
CLN3-222ENST00000566083 SH2D3AQ9BRG2 576 aa16.66■□□□□ 0.26
CLN3-222ENST00000566083 IFT122Q9HBG6 1241 aa16.66■□□□□ 0.26
CLN3-222ENST00000566083 KANSL3Q9P2N6 904 aa16.66■□□□□ 0.26
CLN3-222ENST00000566083 HCSTQ9UBK5 93 aa16.66■□□□□ 0.26
CLN3-222ENST00000566083 PCDHA12Q9UN75 941 aa16.66■□□□□ 0.26
CLN3-222ENST00000566083 PCDHGC5Q9Y5F6 944 aa16.66■□□□□ 0.26
CLN3-222ENST00000566083 CNTNAP2Q9UHC6 1331 aa16.65■□□□□ 0.26
CLN3-222ENST00000566083 LOC730098B7Z3J9 87 aa16.65■□□□□ 0.26
CLN3-222ENST00000566083 CTDNEP1O95476 244 aa16.65■□□□□ 0.26
CLN3-222ENST00000566083 NPEPPSP55786 919 aa16.65■□□□□ 0.26
CLN3-222ENST00000566083 BCAR1P56945 870 aa16.65■□□□□ 0.26
CLN3-222ENST00000566083 RNASELQ05823 741 aaKnown RBP16.65■□□□□ 0.26
CLN3-222ENST00000566083 KCNC3Q14003 757 aa16.65■□□□□ 0.26
CLN3-222ENST00000566083 CBX2Q14781 532 aaPredicted RBP16.65■□□□□ 0.26
CLN3-222ENST00000566083 TPRNQ4KMQ1 711 aa16.65■□□□□ 0.26
CLN3-222ENST00000566083 PLA2G4FQ68DD2 849 aa16.65■□□□□ 0.26
CLN3-222ENST00000566083 ANKRD54Q6NXT1 300 aa16.65■□□□□ 0.26
CLN3-222ENST00000566083 CNNM3Q8NE01 707 aa16.65■□□□□ 0.26
CLN3-222ENST00000566083 OXER1Q8TDS5 423 aa16.65■□□□□ 0.26
CLN3-222ENST00000566083 PRPF31Q8WWY3 499 aaKnown RBP16.65■□□□□ 0.26
CLN3-222ENST00000566083 SUSD6Q92537 303 aa16.65■□□□□ 0.26
CLN3-222ENST00000566083 MFSD14AQ96MC6 490 aa16.65■□□□□ 0.26
CLN3-222ENST00000566083 AGPAT5Q9NUQ2 364 aa16.65■□□□□ 0.26
CLN3-222ENST00000566083 TECP42680 631 aa16.64■□□□□ 0.25
CLN3-222ENST00000566083 XKR9Q5GH70 373 aa16.64■□□□□ 0.25
CLN3-222ENST00000566083 NOMO2Q5JPE7 1267 aa16.64■□□□□ 0.25
CLN3-222ENST00000566083 NCAPH2Q6IBW4 605 aa16.64■□□□□ 0.25
CLN3-222ENST00000566083 POTEDQ86YR6 584 aa16.64■□□□□ 0.25
CLN3-222ENST00000566083 URGCPQ8TCY9 931 aa16.64■□□□□ 0.25
CLN3-222ENST00000566083 UBN1Q9NPG3 1134 aa16.64■□□□□ 0.25
CLN3-222ENST00000566083 IRAK3Q9Y616 596 aa16.64■□□□□ 0.25
CLN3-222ENST00000566083 ZC3H11AO75152 810 aaKnown RBP eCLIP16.63■□□□□ 0.25
CLN3-222ENST00000566083 LYPLA2O95372 231 aa16.63■□□□□ 0.25
CLN3-222ENST00000566083 FDPSP14324 419 aaKnown RBP16.63■□□□□ 0.25
CLN3-222ENST00000566083 AXLP30530 894 aa16.63■□□□□ 0.25
CLN3-222ENST00000566083 NEK4P51957 841 aa16.63■□□□□ 0.25
CLN3-222ENST00000566083 ITIH3Q06033 890 aa16.63■□□□□ 0.25
CLN3-222ENST00000566083 POU5F1BQ06416 359 aa16.63■□□□□ 0.25
CLN3-222ENST00000566083 SPIRE1Q08AE8 756 aa16.63■□□□□ 0.25
CLN3-222ENST00000566083 LAMTOR4Q0VGL1 99 aa16.63■□□□□ 0.25
CLN3-222ENST00000566083 TFDP1Q14186 410 aa16.63■□□□□ 0.25
CLN3-222ENST00000566083 EMC2Q15006 297 aa16.63■□□□□ 0.25
CLN3-222ENST00000566083 CALCRLQ16602 461 aa16.63■□□□□ 0.25
CLN3-222ENST00000566083 ME3Q16798 604 aa16.63■□□□□ 0.25
CLN3-222ENST00000566083 CES5AQ6NT32 575 aa16.63■□□□□ 0.25
CLN3-222ENST00000566083 DDX53Q86TM3 631 aaKnown RBP16.63■□□□□ 0.25
CLN3-222ENST00000566083 FERMT3Q86UX7 667 aa16.63■□□□□ 0.25
CLN3-222ENST00000566083 KSR1Q8IVT5 923 aa16.63■□□□□ 0.25
CLN3-222ENST00000566083 TPH2Q8IWU9 490 aa16.63■□□□□ 0.25
CLN3-222ENST00000566083 EDAQ92838 391 aa16.63■□□□□ 0.25
CLN3-222ENST00000566083 CCDC43Q96MW1 224 aaKnown RBP16.63■□□□□ 0.25
CLN3-222ENST00000566083 NECTIN4Q96NY8 510 aa16.63■□□□□ 0.25
CLN3-222ENST00000566083 MTRQ99707 1265 aa16.63■□□□□ 0.25
CLN3-222ENST00000566083 MUTYHQ9UIF7 546 aa16.63■□□□□ 0.25
CLN3-222ENST00000566083 PCDHB2Q9Y5E7 798 aa16.63■□□□□ 0.25
CLN3-222ENST00000566083 C2orf71A6NGG8 1288 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 HIDE1A8MVS5 230 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 DGAT1O75907 488 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 ERLIN2O94905 339 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 SRGAP2CP0DJJ0 459 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 XRCC6P12956 609 aaKnown RBP eCLIP16.62■□□□□ 0.25
CLN3-222ENST00000566083 PBX3P40426 434 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 NR5A1Q13285 461 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 SAFBQ15424 915 aaKnown RBP eCLIP16.62■□□□□ 0.25
CLN3-222ENST00000566083 MRPL10Q7Z7H8 261 aaKnown RBP16.62■□□□□ 0.25
CLN3-222ENST00000566083 VPS52Q8N1B4 723 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 RNF149Q8NC42 400 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 VN1R2Q8NFZ6 395 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 TNFRSF25Q93038 417 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 TMEM143Q96AN5 459 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 CCDC51Q96ER9 411 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 IGSF21Q96ID5 467 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 DYDC2Q96IM9 177 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 S1PR5Q9H228 398 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 GJB4Q9NTQ9 266 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 ANKEF1Q9NU02 776 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 TBC1D13Q9NVG8 400 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 RGL1Q9NZL6 768 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 NEMFO60524 1076 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 OFD1O75665 1012 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 SLITRK3O94933 977 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 CXCL14O95715 111 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 CYP4A11Q02928 519 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 CTTNQ14247 550 aaKnown RBP16.62■□□□□ 0.25
CLN3-222ENST00000566083 BMP8AQ7Z5Y6 402 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 PPFIBP1Q86W92 1011 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 DIS3L2Q8IYB7 885 aaKnown RBP16.62■□□□□ 0.25
CLN3-222ENST00000566083 NECAB1Q8N987 351 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 NSUN7Q8NE18 718 aaKnown RBP16.62■□□□□ 0.25
CLN3-222ENST00000566083 RPGRIP1Q96KN7 1286 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 FAM193BQ96PV7 902 aaPredicted RBP16.62■□□□□ 0.25
CLN3-222ENST00000566083 HSD17B14Q9BPX1 270 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 EIF2AK1Q9BQI3 630 aaKnown RBP16.62■□□□□ 0.25
CLN3-222ENST00000566083 TTC12Q9H892 705 aaPredicted RBP16.62■□□□□ 0.25
CLN3-222ENST00000566083 RSAD1Q9HA92 442 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 DZANK1Q9NVP4 752 aa16.62■□□□□ 0.25
CLN3-222ENST00000566083 WRAP73Q9P2S5 460 aaPredicted RBP16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms