RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 GABBR1Q9UBS5 961 aa11.75□□□□□ -0.53
SF3B3-204ENST00000563739 BRPF3Q9ULD4 1205 aa11.75□□□□□ -0.53
SF3B3-204ENST00000563739 AKT3Q9Y243 479 aa11.75□□□□□ -0.53
SF3B3-204ENST00000563739 TDRD15B5MCY1 1934 aaKnown RBP11.75□□□□□ -0.53
SF3B3-204ENST00000563739 SLC27A2O14975 620 aa11.74□□□□□ -0.53
SF3B3-204ENST00000563739 FOSP01100 380 aaPredicted RBP11.74□□□□□ -0.53
SF3B3-204ENST00000563739 OATP04181 439 aa11.74□□□□□ -0.53
SF3B3-204ENST00000563739 DCNP07585 359 aaKnown RBP11.74□□□□□ -0.53
SF3B3-204ENST00000563739 CDC27P30260 824 aa11.74□□□□□ -0.53
SF3B3-204ENST00000563739 NAPAP54920 295 aa11.74□□□□□ -0.53
SF3B3-204ENST00000563739 PRKCEQ02156 737 aa11.74□□□□□ -0.53
SF3B3-204ENST00000563739 JAKMIP3Q5VZ66 844 aa11.74□□□□□ -0.53
SF3B3-204ENST00000563739 B3GNT9Q6UX72 402 aa11.74□□□□□ -0.53
SF3B3-204ENST00000563739 AGMOQ6ZNB7 445 aa11.74□□□□□ -0.53
SF3B3-204ENST00000563739 C15orf39Q6ZRI6 1047 aa11.74□□□□□ -0.53
SF3B3-204ENST00000563739 OTOP3Q7RTS5 596 aa11.74□□□□□ -0.53
SF3B3-204ENST00000563739 TAS1R1Q7RTX1 841 aa11.74□□□□□ -0.53
SF3B3-204ENST00000563739 CABP7Q86V35 215 aa11.74□□□□□ -0.53
SF3B3-204ENST00000563739 ABI1Q8IZP0 508 aa11.74□□□□□ -0.53
SF3B3-204ENST00000563739 ST13P5Q8NFI4 369 aaPredicted RBP11.74□□□□□ -0.53
SF3B3-204ENST00000563739 GJA10Q969M2 543 aa11.74□□□□□ -0.53
SF3B3-204ENST00000563739 RWDD1Q9H446 243 aaPredicted RBP11.74□□□□□ -0.53
SF3B3-204ENST00000563739 BARHL2Q9NY43 387 aa11.74□□□□□ -0.53
SF3B3-204ENST00000563739 WNT16Q9UBV4 365 aa11.74□□□□□ -0.53
SF3B3-204ENST00000563739 CA14Q9ULX7 337 aa11.74□□□□□ -0.53
SF3B3-204ENST00000563739 UNC79Q9P2D8 2635 aa11.74□□□□□ -0.53
SF3B3-204ENST00000563739 VWA8A3KMH1 1905 aa11.74□□□□□ -0.53
SF3B3-204ENST00000563739 SMCO2A6NFE2 343 aa11.73□□□□□ -0.53
SF3B3-204ENST00000563739 CCDC69A6NI79 296 aa11.73□□□□□ -0.53
SF3B3-204ENST00000563739 CLUHO75153 1309 aa11.73□□□□□ -0.53
SF3B3-204ENST00000563739 RFPL2O75678 378 aa11.73□□□□□ -0.53
SF3B3-204ENST00000563739 MCM5P33992 734 aa11.73□□□□□ -0.53
SF3B3-204ENST00000563739 CA8P35219 290 aa11.73□□□□□ -0.53
SF3B3-204ENST00000563739 HTR4Q13639 388 aa11.73□□□□□ -0.53
SF3B3-204ENST00000563739 UBXN11Q5T124 520 aa11.73□□□□□ -0.53
SF3B3-204ENST00000563739 SLC44A3Q8N4M1 653 aa11.73□□□□□ -0.53
SF3B3-204ENST00000563739 GPR152Q8TDT2 470 aa11.73□□□□□ -0.53
SF3B3-204ENST00000563739 TCEANC2Q96MN5 208 aa11.73□□□□□ -0.53
SF3B3-204ENST00000563739 RHOBTB2Q9BYZ6 727 aa11.73□□□□□ -0.53
SF3B3-204ENST00000563739 FOXQ1Q9C009 403 aa11.73□□□□□ -0.53
SF3B3-204ENST00000563739 WDR6Q9NNW5 1121 aaKnown RBP11.73□□□□□ -0.53
SF3B3-204ENST00000563739 MAN1C1Q9NR34 630 aa11.73□□□□□ -0.53
SF3B3-204ENST00000563739 IGSF9Q9P2J2 1179 aa11.73□□□□□ -0.53
SF3B3-204ENST00000563739 FRYQ5TBA9 3013 aa11.72□□□□□ -0.53
SF3B3-204ENST00000563739 A0A087WZ62 844 aa11.72□□□□□ -0.53
SF3B3-204ENST00000563739 SHISA7A6NL88 538 aa11.72□□□□□ -0.53
SF3B3-204ENST00000563739 ANHXE9PGG2 379 aa11.72□□□□□ -0.53
SF3B3-204ENST00000563739 MAGEB2O15479 319 aa11.72□□□□□ -0.53
SF3B3-204ENST00000563739 ZNF623O75123 536 aa11.72□□□□□ -0.53
SF3B3-204ENST00000563739 SSBP05455 408 aaKnown RBP eCLIP11.72□□□□□ -0.53
SF3B3-204ENST00000563739 CALM1P0DP23 149 aa11.72□□□□□ -0.53
SF3B3-204ENST00000563739 CALM2P0DP24 149 aa11.72□□□□□ -0.53
SF3B3-204ENST00000563739 CALM3P0DP25 149 aa11.72□□□□□ -0.53
SF3B3-204ENST00000563739 SRFP11831 508 aa11.72□□□□□ -0.53
SF3B3-204ENST00000563739 ZSCAN20P17040 1043 aaPredicted RBP11.72□□□□□ -0.53
SF3B3-204ENST00000563739 TGM1P22735 817 aa11.72□□□□□ -0.53
SF3B3-204ENST00000563739 CIITAP33076 1130 aa11.72□□□□□ -0.53
SF3B3-204ENST00000563739 ALDH7A1P49419 539 aaKnown RBP11.72□□□□□ -0.53
SF3B3-204ENST00000563739 PUM1Q14671 1186 aaKnown RBP eCLIP11.72□□□□□ -0.53
SF3B3-204ENST00000563739 NECTIN1Q15223 517 aa11.72□□□□□ -0.53
SF3B3-204ENST00000563739 NOMO2Q5JPE7 1267 aa11.72□□□□□ -0.53
SF3B3-204ENST00000563739 PHLDB3Q6NSJ2 640 aa11.72□□□□□ -0.53
SF3B3-204ENST00000563739 CASC1Q6TDU7 716 aa11.72□□□□□ -0.53
SF3B3-204ENST00000563739 NFXL1Q6ZNB6 911 aa11.72□□□□□ -0.53
SF3B3-204ENST00000563739 TEX2Q8IWB9 1127 aa11.72□□□□□ -0.53
SF3B3-204ENST00000563739 CKAP2LQ8IYA6 745 aa11.72□□□□□ -0.53
SF3B3-204ENST00000563739 SMAP1Q8IYB5 467 aaPredicted RBP11.72□□□□□ -0.53
SF3B3-204ENST00000563739 ACSF2Q96CM8 615 aaPredicted RBP11.72□□□□□ -0.53
SF3B3-204ENST00000563739 MAP7D2Q96T17 732 aa11.72□□□□□ -0.53
SF3B3-204ENST00000563739 SH2D3AQ9BRG2 576 aa11.72□□□□□ -0.53
SF3B3-204ENST00000563739 FDXACB1Q9BRP7 624 aaPredicted RBP11.72□□□□□ -0.53
SF3B3-204ENST00000563739 ZNF577Q9BSK1 485 aa11.72□□□□□ -0.53
SF3B3-204ENST00000563739 RPP25Q9BUL9 199 aaKnown RBP11.72□□□□□ -0.53
SF3B3-204ENST00000563739 HERC2P3Q9BVR0 1158 aa11.72□□□□□ -0.53
SF3B3-204ENST00000563739 SEMA4AQ9H3S1 761 aa11.72□□□□□ -0.53
SF3B3-204ENST00000563739 FAM105AQ9NUU6 356 aa11.72□□□□□ -0.53
SF3B3-204ENST00000563739 FBXL21Q9UKT6 434 aa11.72□□□□□ -0.53
SF3B3-204ENST00000563739 INPP5FQ9Y2H2 1132 aa11.72□□□□□ -0.53
SF3B3-204ENST00000563739 PCDHA10Q9Y5I2 948 aa11.72□□□□□ -0.53
SF3B3-204ENST00000563739 MSH4O15457 936 aa11.71□□□□□ -0.53
SF3B3-204ENST00000563739 TEX28O15482 410 aa11.71□□□□□ -0.53
SF3B3-204ENST00000563739 PSAPP07602 524 aa11.71□□□□□ -0.53
SF3B3-204ENST00000563739 MYBP10242 640 aa11.71□□□□□ -0.53
SF3B3-204ENST00000563739 EXOSC10Q01780 885 aaKnown RBP11.71□□□□□ -0.53
SF3B3-204ENST00000563739 TBC1D8BQ0IIM8 1120 aa11.71□□□□□ -0.53
SF3B3-204ENST00000563739 GIT2Q14161 759 aa11.71□□□□□ -0.53
SF3B3-204ENST00000563739 RSPO4Q2I0M5 234 aaPredicted RBP11.71□□□□□ -0.53
SF3B3-204ENST00000563739 CREB3L3Q68CJ9 461 aa11.71□□□□□ -0.53
SF3B3-204ENST00000563739 KSR1Q8IVT5 923 aa11.71□□□□□ -0.53
SF3B3-204ENST00000563739 GBP3Q9H0R5 595 aa11.71□□□□□ -0.53
SF3B3-204ENST00000563739 UNC45AQ9H3U1 944 aa11.71□□□□□ -0.53
SF3B3-204ENST00000563739 MINDY3Q9H8M7 445 aa11.71□□□□□ -0.53
SF3B3-204ENST00000563739 ARHGEF3Q9NR81 526 aa11.71□□□□□ -0.53
SF3B3-204ENST00000563739 SLC12A7Q9Y666 1083 aa11.71□□□□□ -0.53
SF3B3-204ENST00000563739 V9GY48 417 aaPredicted RBP11.71□□□□□ -0.53
SF3B3-204ENST00000563739 NID2Q14112 1375 aa11.7□□□□□ -0.54
SF3B3-204ENST00000563739 ESYT2A0FGR8 921 aa11.7□□□□□ -0.54
SF3B3-204ENST00000563739 hCG_1984214I3L0E3 225 aa11.7□□□□□ -0.54
SF3B3-204ENST00000563739 NRP1O14786 923 aa11.7□□□□□ -0.54
SF3B3-204ENST00000563739 INPPL1O15357 1258 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms