RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 ZNF653Q96CK0 615 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 CPB2Q96IY4 423 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 TRIM31Q9BZY9 425 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 PDE11AQ9HCR9 933 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.99□□□□□ -0.81
VPS39-205ENST00000562258 FAM208AQ9UK61 1670 aaKnown RBP9.99□□□□□ -0.81
VPS39-205ENST00000562258 CTAGE9A4FU28 777 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 GOLGA6L10A6NI86 522 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 A8MXQ7 604 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 H2AFZP0C0S5 128 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 MFSD10Q14728 455 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 SURF1Q15526 300 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 NAALADL2Q58DX5 795 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 BSPRYQ5W0U4 402 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 H2AFVQ71UI9 128 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 CCDC25Q86WR0 208 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 ATP8B4Q8TF62 1192 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 TEPSINQ96N21 525 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 ACBD3Q9H3P7 528 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 ANKEF1Q9NU02 776 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 C4BP0C0L5 1744 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 PIK3R2O00459 728 aa9.98□□□□□ -0.81
VPS39-205ENST00000562258 CEP104O60308 925 aa9.98□□□□□ -0.81
VPS39-205ENST00000562258 IFNB1P01574 187 aa9.98□□□□□ -0.81
VPS39-205ENST00000562258 LGALS2P05162 132 aa9.98□□□□□ -0.81
VPS39-205ENST00000562258 GJB1P08034 283 aa9.98□□□□□ -0.81
VPS39-205ENST00000562258 CACNB2Q08289 660 aaPredicted RBP9.98□□□□□ -0.81
VPS39-205ENST00000562258 MESDQ14696 234 aa9.98□□□□□ -0.81
VPS39-205ENST00000562258 OTOP1Q7RTM1 612 aa9.98□□□□□ -0.81
VPS39-205ENST00000562258 GPD1LQ8N335 351 aa9.98□□□□□ -0.81
VPS39-205ENST00000562258 YME1L1Q96TA2 773 aa9.98□□□□□ -0.81
VPS39-205ENST00000562258 HSPBP1Q9NZL4 362 aa9.98□□□□□ -0.81
VPS39-205ENST00000562258 BCCIPQ9P287 314 aaKnown RBP eCLIP9.98□□□□□ -0.81
VPS39-205ENST00000562258 AFDNP55196 1824 aaKnown RBP9.98□□□□□ -0.81
VPS39-205ENST00000562258 ZC3H11AO75152 810 aaKnown RBP eCLIP9.98□□□□□ -0.81
VPS39-205ENST00000562258 ZNF18P17022 549 aa9.98□□□□□ -0.81
VPS39-205ENST00000562258 DNAJB2P25686 324 aa9.98□□□□□ -0.81
VPS39-205ENST00000562258 POLR2BP30876 1174 aaKnown RBP9.98□□□□□ -0.81
VPS39-205ENST00000562258 RFC5P40937 340 aa9.98□□□□□ -0.81
VPS39-205ENST00000562258 PTPAQ15257 358 aa9.98□□□□□ -0.81
VPS39-205ENST00000562258 PTGISQ16647 500 aa9.98□□□□□ -0.81
VPS39-205ENST00000562258 CDO1Q16878 200 aa9.98□□□□□ -0.81
VPS39-205ENST00000562258 NFRKBQ6P4R8 1299 aa9.98□□□□□ -0.81
VPS39-205ENST00000562258 PEX26Q7Z412 305 aa9.98□□□□□ -0.81
VPS39-205ENST00000562258 RABGGTAQ92696 567 aa9.98□□□□□ -0.81
VPS39-205ENST00000562258 NAA15Q9BXJ9 866 aaKnown RBP9.98□□□□□ -0.81
VPS39-205ENST00000562258 DNAJC12Q9UKB3 198 aa9.98□□□□□ -0.81
VPS39-205ENST00000562258 COL1A1P02452 1464 aaPredicted RBP9.98□□□□□ -0.81
VPS39-205ENST00000562258 A0A0G2JLL6 359 aaPredicted RBP9.98□□□□□ -0.81
VPS39-205ENST00000562258 RNF8O76064 485 aa9.98□□□□□ -0.81
VPS39-205ENST00000562258 ADORA2BP29275 332 aa9.98□□□□□ -0.81
VPS39-205ENST00000562258 PSEN2P49810 448 aa9.98□□□□□ -0.81
VPS39-205ENST00000562258 BFSP2Q13515 415 aa9.98□□□□□ -0.81
VPS39-205ENST00000562258 AMHR2Q16671 573 aa9.98□□□□□ -0.81
VPS39-205ENST00000562258 PRRT2Q7Z6L0 340 aaPredicted RBP9.98□□□□□ -0.81
VPS39-205ENST00000562258 SIX6OS1Q8N1H7 587 aa9.98□□□□□ -0.81
VPS39-205ENST00000562258 MYH14Q7Z406 1995 aaKnown RBP9.98□□□□□ -0.81
VPS39-205ENST00000562258 PLCH1Q4KWH8 1693 aa9.97□□□□□ -0.81
VPS39-205ENST00000562258 ASAP2O43150 1006 aa9.97□□□□□ -0.81
VPS39-205ENST00000562258 SLITRK3O94933 977 aa9.97□□□□□ -0.81
VPS39-205ENST00000562258 NPTX2P47972 431 aa9.97□□□□□ -0.81
VPS39-205ENST00000562258 RARRES1P49788 294 aa9.97□□□□□ -0.81
VPS39-205ENST00000562258 IFFO1Q0D2I5 559 aa9.97□□□□□ -0.81
VPS39-205ENST00000562258 TCP11X2Q5H9J9 407 aa9.97□□□□□ -0.81
VPS39-205ENST00000562258 DAAM2Q86T65 1068 aa9.97□□□□□ -0.81
VPS39-205ENST00000562258 PRMT7Q9NVM4 692 aaPredicted RBP9.97□□□□□ -0.81
VPS39-205ENST00000562258 ZNF214Q9UL59 606 aaPredicted RBP9.97□□□□□ -0.81
VPS39-205ENST00000562258 ERLIN1O75477 346 aa9.97□□□□□ -0.81
VPS39-205ENST00000562258 ABCD1P33897 745 aa9.97□□□□□ -0.81
VPS39-205ENST00000562258 VPS41P49754 854 aa9.97□□□□□ -0.81
VPS39-205ENST00000562258 BCAR1P56945 870 aa9.97□□□□□ -0.81
VPS39-205ENST00000562258 RBL2Q08999 1139 aa9.97□□□□□ -0.81
VPS39-205ENST00000562258 THEM5Q8N1Q8 247 aa9.97□□□□□ -0.81
VPS39-205ENST00000562258 SYT2Q8N9I0 419 aaPredicted RBP9.97□□□□□ -0.81
VPS39-205ENST00000562258 ZBTB10Q96DT7 871 aa9.97□□□□□ -0.81
VPS39-205ENST00000562258 KIAA1586Q9HCI6 787 aa9.97□□□□□ -0.81
VPS39-205ENST00000562258 NGRNQ9NPE2 291 aaKnown RBP9.97□□□□□ -0.81
VPS39-205ENST00000562258 ODF2LQ9ULJ1 636 aa9.97□□□□□ -0.81
VPS39-205ENST00000562258 ALDH7A1P49419 539 aaKnown RBP9.97□□□□□ -0.81
VPS39-205ENST00000562258 BPIFB4P59827 614 aa9.97□□□□□ -0.81
VPS39-205ENST00000562258 SNRNP35Q16560 246 aaKnown RBP9.97□□□□□ -0.81
VPS39-205ENST00000562258 KAZNQ674X7 775 aa9.97□□□□□ -0.81
VPS39-205ENST00000562258 BTNL9Q6UXG8 535 aa9.97□□□□□ -0.81
VPS39-205ENST00000562258 TMEM169Q96HH4 297 aa9.97□□□□□ -0.81
VPS39-205ENST00000562258 HINFPQ9BQA5 517 aa9.97□□□□□ -0.81
VPS39-205ENST00000562258 PI4K2AQ9BTU6 479 aa9.97□□□□□ -0.81
VPS39-205ENST00000562258 POLR3CQ9BUI4 534 aaPredicted RBP9.97□□□□□ -0.81
VPS39-205ENST00000562258 MIS12Q9H081 205 aa9.97□□□□□ -0.81
VPS39-205ENST00000562258 PCDHB7Q9Y5E2 793 aa9.97□□□□□ -0.81
VPS39-205ENST00000562258 SCN11AQ9UI33 1791 aa9.97□□□□□ -0.81
VPS39-205ENST00000562258 ZC3H4Q9UPT8 1303 aaKnown RBP9.96□□□□□ -0.81
VPS39-205ENST00000562258 MYO1FO00160 1098 aa9.96□□□□□ -0.81
VPS39-205ENST00000562258 POMCP01189 267 aa9.96□□□□□ -0.81
VPS39-205ENST00000562258 ANXA13P27216 316 aa9.96□□□□□ -0.81
VPS39-205ENST00000562258 CASP4P49662 377 aa9.96□□□□□ -0.81
VPS39-205ENST00000562258 VEGFBP49765 207 aa9.96□□□□□ -0.81
VPS39-205ENST00000562258 TSPY1Q01534 308 aa9.96□□□□□ -0.81
VPS39-205ENST00000562258 MKRN4PQ13434 485 aaPredicted RBP9.96□□□□□ -0.81
VPS39-205ENST00000562258 ZNF484Q5JVG2 852 aa9.96□□□□□ -0.81
VPS39-205ENST00000562258 NOTUMQ6P988 496 aa9.96□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms