RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 GPC3P51654 580 aa15.66■□□□□ 0.1
LDLR-213ENST00000560502 PRKCEQ02156 737 aa15.66■□□□□ 0.1
LDLR-213ENST00000560502 SIGLEC14Q08ET2 396 aa15.66■□□□□ 0.1
LDLR-213ENST00000560502 UGCGQ16739 394 aa15.66■□□□□ 0.1
LDLR-213ENST00000560502 IER5LQ5T953 404 aa15.66■□□□□ 0.1
LDLR-213ENST00000560502 TRMT1LQ7Z2T5 733 aaKnown RBP15.66■□□□□ 0.1
LDLR-213ENST00000560502 ZNF598Q86UK7 904 aaKnown RBP15.66■□□□□ 0.1
LDLR-213ENST00000560502 FBXL6Q8N531 539 aa15.66■□□□□ 0.1
LDLR-213ENST00000560502 ASIC4Q96FT7 647 aa15.66■□□□□ 0.1
LDLR-213ENST00000560502 ZNF558Q96NG5 402 aa15.66■□□□□ 0.1
LDLR-213ENST00000560502 NGRNQ9NPE2 291 aaKnown RBP15.66■□□□□ 0.1
LDLR-213ENST00000560502 ENTPD7Q9NQZ7 604 aa15.66■□□□□ 0.1
LDLR-213ENST00000560502 DISC1Q9NRI5 854 aa15.66■□□□□ 0.1
LDLR-213ENST00000560502 VPS54Q9P1Q0 977 aa15.66■□□□□ 0.1
LDLR-213ENST00000560502 MYO10Q9HD67 2058 aa15.65■□□□□ 0.1
LDLR-213ENST00000560502 GOLGA6L4A6NEF3 574 aa15.65■□□□□ 0.1
LDLR-213ENST00000560502 BMP15O95972 392 aa15.65■□□□□ 0.1
LDLR-213ENST00000560502 DARSP14868 501 aaKnown RBP15.65■□□□□ 0.1
LDLR-213ENST00000560502 ZSCAN20P17040 1043 aaPredicted RBP15.65■□□□□ 0.1
LDLR-213ENST00000560502 TMOD1P28289 359 aa15.65■□□□□ 0.1
LDLR-213ENST00000560502 PBX3P40426 434 aa15.65■□□□□ 0.1
LDLR-213ENST00000560502 TECP42680 631 aa15.65■□□□□ 0.1
LDLR-213ENST00000560502 TRAPPC10P48553 1259 aa15.65■□□□□ 0.1
LDLR-213ENST00000560502 TARBP2Q15633 366 aaKnown RBP15.65■□□□□ 0.1
LDLR-213ENST00000560502 PTPN21Q16825 1174 aa15.65■□□□□ 0.1
LDLR-213ENST00000560502 FAM173BQ6P4H8 233 aa15.65■□□□□ 0.1
LDLR-213ENST00000560502 SLC39A11Q8N1S5 342 aa15.65■□□□□ 0.1
LDLR-213ENST00000560502 BICD2Q8TD16 824 aa15.65■□□□□ 0.1
LDLR-213ENST00000560502 SLC5A5Q92911 643 aa15.65■□□□□ 0.1
LDLR-213ENST00000560502 CHAMP1Q96JM3 812 aa15.65■□□□□ 0.1
LDLR-213ENST00000560502 USP28Q96RU2 1077 aa15.65■□□□□ 0.1
LDLR-213ENST00000560502 RIT2Q99578 217 aa15.65■□□□□ 0.1
LDLR-213ENST00000560502 GDPD2Q9HCC8 539 aa15.65■□□□□ 0.1
LDLR-213ENST00000560502 GJB4Q9NTQ9 266 aa15.65■□□□□ 0.1
LDLR-213ENST00000560502 PUF60Q9UHX1 559 aaKnown RBP15.65■□□□□ 0.1
LDLR-213ENST00000560502 NOL7Q9UMY1 257 aaKnown RBP15.65■□□□□ 0.1
LDLR-213ENST00000560502 SAMM50Q9Y512 469 aa15.65■□□□□ 0.1
LDLR-213ENST00000560502 A0A0U1RQF3 1178 aa15.64■□□□□ 0.09
LDLR-213ENST00000560502 BTBD18B2RXH4 712 aa15.64■□□□□ 0.09
LDLR-213ENST00000560502 HOXB8P17481 243 aaPredicted RBP15.64■□□□□ 0.09
LDLR-213ENST00000560502 SFNP31947 248 aa15.64■□□□□ 0.09
LDLR-213ENST00000560502 JAK3P52333 1124 aa15.64■□□□□ 0.09
LDLR-213ENST00000560502 NLRP5P59047 1200 aa15.64■□□□□ 0.09
LDLR-213ENST00000560502 TCF15Q12870 199 aa15.64■□□□□ 0.09
LDLR-213ENST00000560502 DENND4AQ7Z401 1863 aa15.64■□□□□ 0.09
LDLR-213ENST00000560502 SUGP1Q8IWZ8 645 aaKnown RBP15.64■□□□□ 0.09
LDLR-213ENST00000560502 ABI1Q8IZP0 508 aa15.64■□□□□ 0.09
LDLR-213ENST00000560502 GPT2Q8TD30 523 aa15.64■□□□□ 0.09
LDLR-213ENST00000560502 ZNF668Q96K58 619 aaPredicted RBP15.64■□□□□ 0.09
LDLR-213ENST00000560502 CEP89Q96ST8 783 aa15.64■□□□□ 0.09
LDLR-213ENST00000560502 PHOX2BQ99453 314 aa15.64■□□□□ 0.09
LDLR-213ENST00000560502 NRBP2Q9NSY0 501 aa15.64■□□□□ 0.09
LDLR-213ENST00000560502 SPG21Q9NZD8 308 aa15.64■□□□□ 0.09
LDLR-213ENST00000560502 KCNJ14Q9UNX9 436 aa15.64■□□□□ 0.09
LDLR-213ENST00000560502 C2orf71A6NGG8 1288 aa15.63■□□□□ 0.09
LDLR-213ENST00000560502 GAS7O60861 476 aa15.63■□□□□ 0.09
LDLR-213ENST00000560502 PPP6R2O75170 966 aa15.63■□□□□ 0.09
LDLR-213ENST00000560502 STBD1O95210 358 aa15.63■□□□□ 0.09
LDLR-213ENST00000560502 EOMESO95936 686 aa15.63■□□□□ 0.09
LDLR-213ENST00000560502 USP11P51784 963 aa15.63■□□□□ 0.09
LDLR-213ENST00000560502 PTPN5P54829 565 aa15.63■□□□□ 0.09
LDLR-213ENST00000560502 KRT17Q04695 432 aa15.63■□□□□ 0.09
LDLR-213ENST00000560502 DRP2Q13474 957 aa15.63■□□□□ 0.09
LDLR-213ENST00000560502 STK38Q15208 465 aa15.63■□□□□ 0.09
LDLR-213ENST00000560502 LLGL2Q6P1M3 1020 aa15.63■□□□□ 0.09
LDLR-213ENST00000560502 B3GNT9Q6UX72 402 aa15.63■□□□□ 0.09
LDLR-213ENST00000560502 LINC00301Q8NCQ3 95 aa15.63■□□□□ 0.09
LDLR-213ENST00000560502 TNFRSF25Q93038 417 aa15.63■□□□□ 0.09
LDLR-213ENST00000560502 PRRX2Q99811 253 aa15.63■□□□□ 0.09
LDLR-213ENST00000560502 UNC45AQ9H3U1 944 aa15.63■□□□□ 0.09
LDLR-213ENST00000560502 TFIP11Q9UBB9 837 aaKnown RBP15.63■□□□□ 0.09
LDLR-213ENST00000560502 PCDHA4Q9UN74 947 aa15.63■□□□□ 0.09
LDLR-213ENST00000560502 IGKV6-21A0A0C4DH24 114 aa15.62■□□□□ 0.09
LDLR-213ENST00000560502 A0A1W2PQ27 194 aa15.62■□□□□ 0.09
LDLR-213ENST00000560502 A0A1W2PQ64 194 aa15.62■□□□□ 0.09
LDLR-213ENST00000560502 A0A1W2PQD8 194 aa15.62■□□□□ 0.09
LDLR-213ENST00000560502 PSMD10O75832 226 aa15.62■□□□□ 0.09
LDLR-213ENST00000560502 LETM1O95202 739 aaPredicted RBP15.62■□□□□ 0.09
LDLR-213ENST00000560502 FGFR4P22455 802 aa15.62■□□□□ 0.09
LDLR-213ENST00000560502 VCPP55072 806 aaKnown RBP15.62■□□□□ 0.09
LDLR-213ENST00000560502 TBC1D8BQ0IIM8 1120 aa15.62■□□□□ 0.09
LDLR-213ENST00000560502 SMC1AQ14683 1233 aaKnown RBP15.62■□□□□ 0.09
LDLR-213ENST00000560502 NPY5RQ15761 445 aa15.62■□□□□ 0.09
LDLR-213ENST00000560502 LRCH2Q5VUJ6 765 aa15.62■□□□□ 0.09
LDLR-213ENST00000560502 TMC7Q7Z402 723 aa15.62■□□□□ 0.09
LDLR-213ENST00000560502 BLIDQ8IZY5 108 aa15.62■□□□□ 0.09
LDLR-213ENST00000560502 MRPL43Q8N983 215 aaKnown RBP15.62■□□□□ 0.09
LDLR-213ENST00000560502 RNF169Q8NCN4 708 aa15.62■□□□□ 0.09
LDLR-213ENST00000560502 RDM1Q8NG50 284 aa15.62■□□□□ 0.09
LDLR-213ENST00000560502 HELQQ8TDG4 1101 aa15.62■□□□□ 0.09
LDLR-213ENST00000560502 CASP10Q92851 521 aa15.62■□□□□ 0.09
LDLR-213ENST00000560502 GJA10Q969M2 543 aa15.62■□□□□ 0.09
LDLR-213ENST00000560502 TRAIPQ9BWF2 469 aa15.62■□□□□ 0.09
LDLR-213ENST00000560502 APOL5Q9BWW9 433 aa15.62■□□□□ 0.09
LDLR-213ENST00000560502 TEKT3Q9BXF9 490 aa15.62■□□□□ 0.09
LDLR-213ENST00000560502 NIFKQ9BYG3 293 aaKnown RBP15.62■□□□□ 0.09
LDLR-213ENST00000560502 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.62■□□□□ 0.09
LDLR-213ENST00000560502 DACT1Q9NYF0 836 aa15.62■□□□□ 0.09
LDLR-213ENST00000560502 CDH22Q9UJ99 828 aa15.62■□□□□ 0.09
LDLR-213ENST00000560502 HCFC2Q9Y5Z7 792 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms