RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 TRIP11Q15643 1979 aa12.2□□□□□ -0.46
SYNE2-227ENST00000557307 GPR37L1O60883 481 aa12.2□□□□□ -0.46
SYNE2-227ENST00000557307 SRGAP2CP0DJJ0 459 aa12.2□□□□□ -0.46
SYNE2-227ENST00000557307 XBP1P17861 261 aa12.2□□□□□ -0.46
SYNE2-227ENST00000557307 SFPQP23246 707 aaKnown RBP eCLIP12.2□□□□□ -0.46
SYNE2-227ENST00000557307 HOXA11P31270 313 aaPredicted RBP12.2□□□□□ -0.46
SYNE2-227ENST00000557307 BCAR1P56945 870 aa12.2□□□□□ -0.46
SYNE2-227ENST00000557307 LAMTOR4Q0VGL1 99 aa12.2□□□□□ -0.46
SYNE2-227ENST00000557307 COASYQ13057 564 aa12.2□□□□□ -0.46
SYNE2-227ENST00000557307 NBR1Q14596 966 aa12.2□□□□□ -0.46
SYNE2-227ENST00000557307 XKR9Q5GH70 373 aa12.2□□□□□ -0.46
SYNE2-227ENST00000557307 KANK3Q6NY19 840 aa12.2□□□□□ -0.46
SYNE2-227ENST00000557307 SYCE2Q6PIF2 218 aa12.2□□□□□ -0.46
SYNE2-227ENST00000557307 ZNF280BQ86YH2 543 aa12.2□□□□□ -0.46
SYNE2-227ENST00000557307 TPH2Q8IWU9 490 aa12.2□□□□□ -0.46
SYNE2-227ENST00000557307 ABI1Q8IZP0 508 aa12.2□□□□□ -0.46
SYNE2-227ENST00000557307 MTMR9Q96QG7 549 aa12.2□□□□□ -0.46
SYNE2-227ENST00000557307 EIF2AQ9BY44 585 aaKnown RBP12.2□□□□□ -0.46
SYNE2-227ENST00000557307 NRDE2Q9H7Z3 1164 aa12.2□□□□□ -0.46
SYNE2-227ENST00000557307 ENTPD7Q9NQZ7 604 aa12.2□□□□□ -0.46
SYNE2-227ENST00000557307 AAASQ9NRG9 546 aa12.2□□□□□ -0.46
SYNE2-227ENST00000557307 TBC1D13Q9NVG8 400 aa12.2□□□□□ -0.46
SYNE2-227ENST00000557307 ZNF318Q5VUA4 2279 aa12.2□□□□□ -0.46
SYNE2-227ENST00000557307 HOXA2O43364 376 aa12.19□□□□□ -0.46
SYNE2-227ENST00000557307 NCK2O43639 380 aa12.19□□□□□ -0.46
SYNE2-227ENST00000557307 ZC3H11AO75152 810 aaKnown RBP eCLIP12.19□□□□□ -0.46
SYNE2-227ENST00000557307 OFD1O75665 1012 aa12.19□□□□□ -0.46
SYNE2-227ENST00000557307 DDHD2O94830 711 aa12.19□□□□□ -0.46
SYNE2-227ENST00000557307 EOMESO95936 686 aa12.19□□□□□ -0.46
SYNE2-227ENST00000557307 ATP2B1P20020 1258 aa12.19□□□□□ -0.46
SYNE2-227ENST00000557307 TXKP42681 527 aa12.19□□□□□ -0.46
SYNE2-227ENST00000557307 DNM2P50570 870 aa12.19□□□□□ -0.46
SYNE2-227ENST00000557307 CAPSQ13938 189 aa12.19□□□□□ -0.46
SYNE2-227ENST00000557307 CALCRLQ16602 461 aa12.19□□□□□ -0.46
SYNE2-227ENST00000557307 AMHR2Q16671 573 aa12.19□□□□□ -0.46
SYNE2-227ENST00000557307 ERICH6BQ5W0A0 696 aa12.19□□□□□ -0.46
SYNE2-227ENST00000557307 FERMT3Q86UX7 667 aa12.19□□□□□ -0.46
SYNE2-227ENST00000557307 CDR2LQ86X02 465 aaPredicted RBP12.19□□□□□ -0.46
SYNE2-227ENST00000557307 RNF135Q8IUD6 432 aa12.19□□□□□ -0.46
SYNE2-227ENST00000557307 SMG8Q8ND04 991 aaKnown RBP12.19□□□□□ -0.46
SYNE2-227ENST00000557307 PIGOQ8TEQ8 1089 aa12.19□□□□□ -0.46
SYNE2-227ENST00000557307 SLC7A3Q8WY07 619 aa12.19□□□□□ -0.46
SYNE2-227ENST00000557307 WASF1Q92558 559 aa12.19□□□□□ -0.46
SYNE2-227ENST00000557307 CPB2Q96IY4 423 aa12.19□□□□□ -0.46
SYNE2-227ENST00000557307 HSD17B14Q9BPX1 270 aa12.19□□□□□ -0.46
SYNE2-227ENST00000557307 TRAIPQ9BWF2 469 aa12.19□□□□□ -0.46
SYNE2-227ENST00000557307 GBP3Q9H0R5 595 aa12.19□□□□□ -0.46
SYNE2-227ENST00000557307 RNF39Q9H2S5 420 aa12.19□□□□□ -0.46
SYNE2-227ENST00000557307 TTC12Q9H892 705 aaPredicted RBP12.19□□□□□ -0.46
SYNE2-227ENST00000557307 PRKAG3Q9UGI9 489 aa12.19□□□□□ -0.46
SYNE2-227ENST00000557307 LZTS1Q9Y250 596 aa12.19□□□□□ -0.46
SYNE2-227ENST00000557307 VWA8A3KMH1 1905 aa12.18□□□□□ -0.46
SYNE2-227ENST00000557307 C2orf71A6NGG8 1288 aa12.18□□□□□ -0.46
SYNE2-227ENST00000557307 F8W810 466 aa12.18□□□□□ -0.46
SYNE2-227ENST00000557307 B4GALT5O43286 388 aa12.18□□□□□ -0.46
SYNE2-227ENST00000557307 DCXO43602 365 aa12.18□□□□□ -0.46
SYNE2-227ENST00000557307 MARCH6O60337 910 aa12.18□□□□□ -0.46
SYNE2-227ENST00000557307 NEMFO60524 1076 aa12.18□□□□□ -0.46
SYNE2-227ENST00000557307 TSPAN1O60635 241 aa12.18□□□□□ -0.46
SYNE2-227ENST00000557307 MED24O75448 989 aa12.18□□□□□ -0.46
SYNE2-227ENST00000557307 EDN1P05305 212 aa12.18□□□□□ -0.46
SYNE2-227ENST00000557307 SPATA31C1P0DKV0 1188 aa12.18□□□□□ -0.46
SYNE2-227ENST00000557307 SP100P23497 879 aaPredicted RBP12.18□□□□□ -0.46
SYNE2-227ENST00000557307 RFC5P40937 340 aa12.18□□□□□ -0.46
SYNE2-227ENST00000557307 TECP42680 631 aa12.18□□□□□ -0.46
SYNE2-227ENST00000557307 SLC11A1P49279 550 aa12.18□□□□□ -0.46
SYNE2-227ENST00000557307 RNF149Q8NC42 400 aa12.18□□□□□ -0.46
SYNE2-227ENST00000557307 PSPC1Q8WXF1 523 aaKnown RBP12.18□□□□□ -0.46
SYNE2-227ENST00000557307 SUSD6Q92537 303 aa12.18□□□□□ -0.46
SYNE2-227ENST00000557307 MTRQ99707 1265 aa12.18□□□□□ -0.46
SYNE2-227ENST00000557307 ZBP1Q9H171 429 aa12.18□□□□□ -0.46
SYNE2-227ENST00000557307 S1PR5Q9H228 398 aa12.18□□□□□ -0.46
SYNE2-227ENST00000557307 ZSWIM4Q9H7M6 989 aa12.18□□□□□ -0.46
SYNE2-227ENST00000557307 GPRC5CQ9NQ84 441 aa12.18□□□□□ -0.46
SYNE2-227ENST00000557307 CHST12Q9NRB3 414 aa12.18□□□□□ -0.46
SYNE2-227ENST00000557307 DACT1Q9NYF0 836 aa12.18□□□□□ -0.46
SYNE2-227ENST00000557307 SPG21Q9NZD8 308 aa12.18□□□□□ -0.46
SYNE2-227ENST00000557307 HES2Q9Y543 173 aa12.18□□□□□ -0.46
SYNE2-227ENST00000557307 PCDHB2Q9Y5E7 798 aa12.18□□□□□ -0.46
SYNE2-227ENST00000557307 TTLL13PA6NNM8 815 aa12.17□□□□□ -0.46
SYNE2-227ENST00000557307 LOC730098B7Z3J9 87 aa12.17□□□□□ -0.46
SYNE2-227ENST00000557307 CLASP2O75122 1294 aaKnown RBP12.17□□□□□ -0.46
SYNE2-227ENST00000557307 GALTP07902 379 aa12.17□□□□□ -0.46
SYNE2-227ENST00000557307 WEE2P0C1S8 567 aa12.17□□□□□ -0.46
SYNE2-227ENST00000557307 GLRA2P23416 452 aa12.17□□□□□ -0.46
SYNE2-227ENST00000557307 MCM7P33993 719 aa12.17□□□□□ -0.46
SYNE2-227ENST00000557307 RARRES1P49788 294 aa12.17□□□□□ -0.46
SYNE2-227ENST00000557307 MBTD1Q05BQ5 628 aa12.17□□□□□ -0.46
SYNE2-227ENST00000557307 NOMO2Q5JPE7 1267 aa12.17□□□□□ -0.46
SYNE2-227ENST00000557307 ANKRD54Q6NXT1 300 aa12.17□□□□□ -0.46
SYNE2-227ENST00000557307 MAEAQ7L5Y9 396 aa12.17□□□□□ -0.46
SYNE2-227ENST00000557307 TMC7Q7Z402 723 aa12.17□□□□□ -0.46
SYNE2-227ENST00000557307 SLFN12Q8IYM2 578 aa12.17□□□□□ -0.46
SYNE2-227ENST00000557307 ZNF710Q8N1W2 664 aa12.17□□□□□ -0.46
SYNE2-227ENST00000557307 PPP2R3CQ969Q6 453 aa12.17□□□□□ -0.46
SYNE2-227ENST00000557307 NAP1L4Q99733 375 aaKnown RBP12.17□□□□□ -0.46
SYNE2-227ENST00000557307 CXCL16Q9H2A7 254 aa12.17□□□□□ -0.46
SYNE2-227ENST00000557307 BRMS1Q9HCU9 246 aa12.17□□□□□ -0.46
SYNE2-227ENST00000557307 RNF216Q9NWF9 866 aaPredicted RBP12.17□□□□□ -0.46
SYNE2-227ENST00000557307 MIOSQ9NXC5 875 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms