RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 PLCB3Q01970 1234 aa17.85■□□□□ 0.45
CCDC88C-209ENST00000554872 CUL4AQ13619 759 aa17.85■□□□□ 0.45
CCDC88C-209ENST00000554872 TFDP1Q14186 410 aa17.85■□□□□ 0.45
CCDC88C-209ENST00000554872 CTC1Q2NKJ3 1217 aa17.85■□□□□ 0.45
CCDC88C-209ENST00000554872 LEXMQ3ZCV2 418 aa17.85■□□□□ 0.45
CCDC88C-209ENST00000554872 TWF2Q6IBS0 349 aaKnown RBP17.85■□□□□ 0.45
CCDC88C-209ENST00000554872 PDE12Q6L8Q7 609 aaKnown RBP17.85■□□□□ 0.45
CCDC88C-209ENST00000554872 COLGALT1Q8NBJ5 622 aa17.85■□□□□ 0.45
CCDC88C-209ENST00000554872 ADAMTS19Q8TE59 1207 aa17.85■□□□□ 0.45
CCDC88C-209ENST00000554872 CCDC43Q96MW1 224 aaKnown RBP17.85■□□□□ 0.45
CCDC88C-209ENST00000554872 MINDY3Q9H8M7 445 aa17.85■□□□□ 0.45
CCDC88C-209ENST00000554872 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.85■□□□□ 0.45
CCDC88C-209ENST00000554872 FAM105AQ9NUU6 356 aa17.85■□□□□ 0.45
CCDC88C-209ENST00000554872 TYW1Q9NV66 732 aaKnown RBP17.85■□□□□ 0.45
CCDC88C-209ENST00000554872 BDP1A6H8Y1 2624 aa17.85■□□□□ 0.45
CCDC88C-209ENST00000554872 SRGAP2CP0DJJ0 459 aa17.84■□□□□ 0.45
CCDC88C-209ENST00000554872 HOXA11P31270 313 aaPredicted RBP17.84■□□□□ 0.45
CCDC88C-209ENST00000554872 PPM1AP35813 382 aa17.84■□□□□ 0.45
CCDC88C-209ENST00000554872 PTGDRQ13258 359 aa17.84■□□□□ 0.45
CCDC88C-209ENST00000554872 CAPSQ13938 189 aa17.84■□□□□ 0.45
CCDC88C-209ENST00000554872 LRRC55Q6ZSA7 311 aa17.84■□□□□ 0.45
CCDC88C-209ENST00000554872 MRPL10Q7Z7H8 261 aaKnown RBP17.84■□□□□ 0.45
CCDC88C-209ENST00000554872 PIGOQ8TEQ8 1089 aa17.84■□□□□ 0.45
CCDC88C-209ENST00000554872 PPP2R3CQ969Q6 453 aa17.84■□□□□ 0.45
CCDC88C-209ENST00000554872 ALG13Q9NP73 1137 aaKnown RBP17.84■□□□□ 0.45
CCDC88C-209ENST00000554872 PCDHB6Q9Y5E3 794 aa17.84■□□□□ 0.45
CCDC88C-209ENST00000554872 CNTNAP2Q9UHC6 1331 aa17.83■□□□□ 0.44
CCDC88C-209ENST00000554872 FSD2A1L4K1 749 aa17.83■□□□□ 0.44
CCDC88C-209ENST00000554872 FGF18O76093 207 aa17.83■□□□□ 0.44
CCDC88C-209ENST00000554872 GLRA2P23416 452 aa17.83■□□□□ 0.44
CCDC88C-209ENST00000554872 DNAJB1P25685 340 aa17.83■□□□□ 0.44
CCDC88C-209ENST00000554872 KCNQ1P51787 676 aa17.83■□□□□ 0.44
CCDC88C-209ENST00000554872 NBR1Q14596 966 aa17.83■□□□□ 0.44
CCDC88C-209ENST00000554872 PUS10Q3MIT2 529 aaKnown RBP17.83■□□□□ 0.44
CCDC88C-209ENST00000554872 POTEGQ6S5H5 508 aa17.83■□□□□ 0.44
CCDC88C-209ENST00000554872 KCTD17Q8N5Z5 321 aa17.83■□□□□ 0.44
CCDC88C-209ENST00000554872 POF1BQ8WVV4 589 aa17.83■□□□□ 0.44
CCDC88C-209ENST00000554872 PGBD4Q96DM1 585 aa17.83■□□□□ 0.44
CCDC88C-209ENST00000554872 SMC3Q9UQE7 1217 aa17.83■□□□□ 0.44
CCDC88C-209ENST00000554872 PLXNA4Q9HCM2 1894 aa17.83■□□□□ 0.44
CCDC88C-209ENST00000554872 ZMYM2Q9UBW7 1377 aa17.82■□□□□ 0.44
CCDC88C-209ENST00000554872 ATP2C1P98194 919 aaPredicted RBP17.82■□□□□ 0.44
CCDC88C-209ENST00000554872 MBTD1Q05BQ5 628 aa17.82■□□□□ 0.44
CCDC88C-209ENST00000554872 HYAL1Q12794 435 aa17.82■□□□□ 0.44
CCDC88C-209ENST00000554872 AMHR2Q16671 573 aa17.82■□□□□ 0.44
CCDC88C-209ENST00000554872 CDCA2Q69YH5 1023 aaPredicted RBP17.82■□□□□ 0.44
CCDC88C-209ENST00000554872 KCNT2Q6UVM3 1135 aa17.82■□□□□ 0.44
CCDC88C-209ENST00000554872 CNNM3Q8NE01 707 aa17.82■□□□□ 0.44
CCDC88C-209ENST00000554872 ASAP3Q8TDY4 903 aa17.82■□□□□ 0.44
CCDC88C-209ENST00000554872 ZNF558Q96NG5 402 aa17.82■□□□□ 0.44
CCDC88C-209ENST00000554872 UHRF1Q96T88 793 aaPredicted RBP17.82■□□□□ 0.44
CCDC88C-209ENST00000554872 BMP2KQ9NSY1 1161 aaPredicted RBP17.82■□□□□ 0.44
CCDC88C-209ENST00000554872 LRWD1Q9UFC0 647 aa17.82■□□□□ 0.44
CCDC88C-209ENST00000554872 PCDHB2Q9Y5E7 798 aa17.82■□□□□ 0.44
CCDC88C-209ENST00000554872 H3BQV1 296 aa17.81■□□□□ 0.44
CCDC88C-209ENST00000554872 FSCN2O14926 492 aa17.81■□□□□ 0.44
CCDC88C-209ENST00000554872 INPPL1O15357 1258 aa17.81■□□□□ 0.44
CCDC88C-209ENST00000554872 TSPAN1O60635 241 aa17.81■□□□□ 0.44
CCDC88C-209ENST00000554872 USO1O60763 962 aaKnown RBP17.81■□□□□ 0.44
CCDC88C-209ENST00000554872 ERLIN2O94905 339 aa17.81■□□□□ 0.44
CCDC88C-209ENST00000554872 CYP11B2P19099 503 aa17.81■□□□□ 0.44
CCDC88C-209ENST00000554872 FAM187BQ17R55 369 aa17.81■□□□□ 0.44
CCDC88C-209ENST00000554872 UBXN11Q5T124 520 aa17.81■□□□□ 0.44
CCDC88C-209ENST00000554872 SPOUT1Q5T280 376 aaKnown RBP17.81■□□□□ 0.44
CCDC88C-209ENST00000554872 ARL6IP4Q66PJ3 421 aaKnown RBP17.81■□□□□ 0.44
CCDC88C-209ENST00000554872 NOTUMQ6P988 496 aa17.81■□□□□ 0.44
CCDC88C-209ENST00000554872 GLB1LQ6UWU2 654 aa17.81■□□□□ 0.44
CCDC88C-209ENST00000554872 PPP4R3CPQ6ZMV5 832 aa17.81■□□□□ 0.44
CCDC88C-209ENST00000554872 HELQQ8TDG4 1101 aa17.81■□□□□ 0.44
CCDC88C-209ENST00000554872 PRIMPOLQ96LW4 560 aa17.81■□□□□ 0.44
CCDC88C-209ENST00000554872 POLR3FQ9H1D9 316 aaPredicted RBP17.81■□□□□ 0.44
CCDC88C-209ENST00000554872 TLR9Q9NR96 1032 aa17.81■□□□□ 0.44
CCDC88C-209ENST00000554872 HCSTQ9UBK5 93 aa17.81■□□□□ 0.44
CCDC88C-209ENST00000554872 MYO7AQ13402 2215 aa17.8■□□□□ 0.44
CCDC88C-209ENST00000554872 ARHGEF35A5YM69 484 aa17.8■□□□□ 0.44
CCDC88C-209ENST00000554872 TNFRSF10AO00220 468 aa17.8■□□□□ 0.44
CCDC88C-209ENST00000554872 NCLP19338 710 aaKnown RBP17.8■□□□□ 0.44
CCDC88C-209ENST00000554872 IBSPP21815 317 aaPredicted RBP17.8■□□□□ 0.44
CCDC88C-209ENST00000554872 KCNA5P22460 613 aa17.8■□□□□ 0.44
CCDC88C-209ENST00000554872 CCT6AP40227 531 aaKnown RBP17.8■□□□□ 0.44
CCDC88C-209ENST00000554872 NCBP1Q09161 790 aaKnown RBP17.8■□□□□ 0.44
CCDC88C-209ENST00000554872 MCTP1Q6DN14 999 aa17.8■□□□□ 0.44
CCDC88C-209ENST00000554872 PADI6Q6TGC4 694 aa17.8■□□□□ 0.44
CCDC88C-209ENST00000554872 DTHD1Q6ZMT9 781 aa17.8■□□□□ 0.44
CCDC88C-209ENST00000554872 BRAPQ7Z569 592 aa17.8■□□□□ 0.44
CCDC88C-209ENST00000554872 THNSL1Q8IYQ7 743 aa17.8■□□□□ 0.44
CCDC88C-209ENST00000554872 SLC39A11Q8N1S5 342 aa17.8■□□□□ 0.44
CCDC88C-209ENST00000554872 RNF169Q8NCN4 708 aa17.8■□□□□ 0.44
CCDC88C-209ENST00000554872 MRPS27Q92552 414 aaKnown RBP17.8■□□□□ 0.44
CCDC88C-209ENST00000554872 CDCA3Q99618 268 aaPredicted RBP17.8■□□□□ 0.44
CCDC88C-209ENST00000554872 UBN1Q9NPG3 1134 aa17.8■□□□□ 0.44
CCDC88C-209ENST00000554872 SPG21Q9NZD8 308 aa17.8■□□□□ 0.44
CCDC88C-209ENST00000554872 SLC26A4O43511 780 aa17.79■□□□□ 0.44
CCDC88C-209ENST00000554872 OFD1O75665 1012 aa17.79■□□□□ 0.44
CCDC88C-209ENST00000554872 IRS1P35568 1242 aa17.79■□□□□ 0.44
CCDC88C-209ENST00000554872 LTBRP36941 435 aa17.79■□□□□ 0.44
CCDC88C-209ENST00000554872 IL17AQ16552 155 aa17.79■□□□□ 0.44
CCDC88C-209ENST00000554872 ECM1Q16610 540 aa17.79■□□□□ 0.44
CCDC88C-209ENST00000554872 NOMO2Q5JPE7 1267 aa17.79■□□□□ 0.44
CCDC88C-209ENST00000554872 HYIQ5T013 277 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms