RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 GFOD2Q3B7J2 385 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 FAM47CQ5HY64 1035 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 ADGRF1Q5T601 910 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 SYDE2Q5VT97 1194 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 ZPBP2Q6X784 338 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 OTOP1Q7RTM1 612 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 RASAL3Q86YV0 1011 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 IRF2BP1Q8IU81 584 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 RTKN2Q8IZC4 609 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 GSTCDQ8NEC7 633 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 COG1Q8WTW3 980 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 SHISA4Q96DD7 197 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 FAM122AQ96E09 287 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 CCDC8Q9H0W5 538 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-208ENST00000551691 PARD6AQ9NPB6 346 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 GFOD1Q9NXC2 390 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 MTMR10Q9NXD2 777 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 KCTD3Q9Y597 815 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 PCDHA9Q9Y5H5 950 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 MRFAP1Q9Y605 127 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 SMG6Q86US8 1419 aaKnown RBP4.71□□□□□ -1.66
LIMA1-208ENST00000551691 POLR2AP24928 1970 aaKnown RBP4.71□□□□□ -1.66
LIMA1-208ENST00000551691 ASTN2O75129 1339 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-208ENST00000551691 WASHC2AQ641Q2 1341 aa4.71□□□□□ -1.66
LIMA1-208ENST00000551691 HMGB1P1B2RPK0 211 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-208ENST00000551691 UBE2Q2LH0YL09 131 aa4.7□□□□□ -1.66
LIMA1-208ENST00000551691 NEMP1O14524 444 aa4.7□□□□□ -1.66
LIMA1-208ENST00000551691 GSTA4O15217 222 aa4.7□□□□□ -1.66
LIMA1-208ENST00000551691 NPHP1O15259 732 aa4.7□□□□□ -1.66
LIMA1-208ENST00000551691 MEFVO15553 781 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-208ENST00000551691 ULK1O75385 1050 aa4.7□□□□□ -1.66
LIMA1-208ENST00000551691 RAD17O75943 681 aa4.7□□□□□ -1.66
LIMA1-208ENST00000551691 CD3EP07766 207 aa4.7□□□□□ -1.66
LIMA1-208ENST00000551691 C6orf222P0C671 652 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-208ENST00000551691 MYBL2P10244 700 aa4.7□□□□□ -1.66
LIMA1-208ENST00000551691 PI3P19957 117 aa4.7□□□□□ -1.66
LIMA1-208ENST00000551691 SEPHS1P49903 392 aa4.7□□□□□ -1.66
LIMA1-208ENST00000551691 SF1Q15637 639 aaKnown RBP4.7□□□□□ -1.66
LIMA1-208ENST00000551691 SEPT7Q16181 437 aaKnown RBP4.7□□□□□ -1.66
LIMA1-208ENST00000551691 PRSS53Q2L4Q9 553 aa4.7□□□□□ -1.66
LIMA1-208ENST00000551691 VMACQ2NL98 169 aa4.7□□□□□ -1.66
LIMA1-208ENST00000551691 MAP9Q49MG5 647 aa4.7□□□□□ -1.66
LIMA1-208ENST00000551691 ATP13A4Q4VNC1 1196 aa4.7□□□□□ -1.66
LIMA1-208ENST00000551691 C14orf80Q86SX3 495 aa4.7□□□□□ -1.66
LIMA1-208ENST00000551691 IFNL3Q8IZI9 196 aa4.7□□□□□ -1.66
LIMA1-208ENST00000551691 LILRA2Q8N149 483 aa4.7□□□□□ -1.66
LIMA1-208ENST00000551691 PHF20Q9BVI0 1012 aa4.7□□□□□ -1.66
LIMA1-208ENST00000551691 PRDM14Q9GZV8 571 aa4.7□□□□□ -1.66
LIMA1-208ENST00000551691 CDH19Q9H159 772 aa4.7□□□□□ -1.66
LIMA1-208ENST00000551691 CYP26B1Q9NR63 512 aa4.7□□□□□ -1.66
LIMA1-208ENST00000551691 IP6K2Q9UHH9 426 aa4.7□□□□□ -1.66
LIMA1-208ENST00000551691 CNOT7Q9UIV1 285 aaKnown RBP4.7□□□□□ -1.66
LIMA1-208ENST00000551691 STXBP5LQ9Y2K9 1186 aa4.7□□□□□ -1.66
LIMA1-208ENST00000551691 LUC7L2Q9Y383 392 aaKnown RBP4.7□□□□□ -1.66
LIMA1-208ENST00000551691 A0A1W2PP64 1363 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 COL15A1P39059 1388 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 ST20-MTHFSA0A0A6YYL1 179 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 SSU72P8A0A1W2PR75 194 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 NOTOA8MTQ0 251 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 STXBP3O00186 592 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 FYB1O15117 783 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 SHOXO15266 292 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 TRIM13O60858 407 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 VAMP4O75379 141 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 FBXO21O94952 628 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 FKBP9O95302 570 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 SRGAP2CP0DJJ0 459 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 NPR1P16066 1061 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 ZSCAN20P17040 1043 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-208ENST00000551691 NOP2P46087 812 aaKnown RBP4.69□□□□□ -1.66
LIMA1-208ENST00000551691 MTHFSP49914 203 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 KPNA1P52294 538 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-208ENST00000551691 EPHB3P54753 998 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 KIR3DS1Q14943 382 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 ABCB5Q2M3G0 1257 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 TBC1D10BQ4KMP7 808 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-208ENST00000551691 PRAMEF18Q5VWM3 479 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 EP400NLQ6ZTU2 488 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 LHFPL2Q6ZUX7 228 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 FKBP9P1Q75LS8 142 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 AMOTL1Q8IY63 956 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 IGSF22Q8N9C0 903 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 CNBD1Q8NA66 436 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 JPH3Q8WXH2 748 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-208ENST00000551691 ZFYVE21Q9BQ24 234 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 G6PC3Q9BUM1 346 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 FOXP3Q9BZS1 431 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 ZNF552Q9H707 407 aaPredicted RBP4.69□□□□□ -1.66
LIMA1-208ENST00000551691 CHST7Q9NS84 486 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 PRR13Q9NZ81 148 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 RCAN3Q9UKA8 241 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 MINPP1Q9UNW1 487 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 ZNF652Q9Y2D9 606 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 PTPN22Q9Y2R2 807 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 PCDHA8Q9Y5H6 950 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 BACE2Q9Y5Z0 518 aa4.69□□□□□ -1.66
LIMA1-208ENST00000551691 TEX51A0A1B0GUA7 166 aa4.68□□□□□ -1.66
LIMA1-208ENST00000551691 M0R2C6 588 aa4.68□□□□□ -1.66
LIMA1-208ENST00000551691 MYO1BO43795 1136 aa4.68□□□□□ -1.66
LIMA1-208ENST00000551691 CREB3O43889 395 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms