RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 CABP7Q86V35 215 aa10.8□□□□□ -0.68
YBX3-212ENST00000542002 IFNLR1Q8IU57 520 aaPredicted RBP10.8□□□□□ -0.68
YBX3-212ENST00000542002 TMEM192Q8IY95 271 aa10.8□□□□□ -0.68
YBX3-212ENST00000542002 FIBCD1Q8N539 461 aa10.8□□□□□ -0.68
YBX3-212ENST00000542002 GDPD5Q8WTR4 605 aa10.8□□□□□ -0.68
YBX3-212ENST00000542002 CLP1Q92989 425 aaKnown RBP10.8□□□□□ -0.68
YBX3-212ENST00000542002 CHAMP1Q96JM3 812 aa10.8□□□□□ -0.68
YBX3-212ENST00000542002 AK8Q96MA6 479 aa10.8□□□□□ -0.68
YBX3-212ENST00000542002 CASD1Q96PB1 797 aa10.8□□□□□ -0.68
YBX3-212ENST00000542002 INO80BQ9C086 356 aaPredicted RBP10.8□□□□□ -0.68
YBX3-212ENST00000542002 ELAC1Q9H777 363 aaKnown RBP10.8□□□□□ -0.68
YBX3-212ENST00000542002 BLOC1S4Q9NUP1 217 aa10.8□□□□□ -0.68
YBX3-212ENST00000542002 AGPAT5Q9NUQ2 364 aa10.8□□□□□ -0.68
YBX3-212ENST00000542002 TMEM161AQ9NX61 479 aa10.8□□□□□ -0.68
YBX3-212ENST00000542002 PIN4Q9Y237 131 aaKnown RBP10.8□□□□□ -0.68
YBX3-212ENST00000542002 SRPRBQ9Y5M8 271 aaKnown RBP10.8□□□□□ -0.68
YBX3-212ENST00000542002 MTCH2Q9Y6C9 303 aa10.8□□□□□ -0.68
YBX3-212ENST00000542002 STK24Q9Y6E0 443 aa10.8□□□□□ -0.68
YBX3-212ENST00000542002 MICAL3Q7RTP6 2002 aa10.8□□□□□ -0.68
YBX3-212ENST00000542002 ADGRA3Q8IWK6 1321 aa10.8□□□□□ -0.68
YBX3-212ENST00000542002 TBKBP1A7MCY6 615 aa10.79□□□□□ -0.68
YBX3-212ENST00000542002 SFI1A8K8P3 1242 aa10.79□□□□□ -0.68
YBX3-212ENST00000542002 TSPAN1O60635 241 aa10.79□□□□□ -0.68
YBX3-212ENST00000542002 BMP15O95972 392 aa10.79□□□□□ -0.68
YBX3-212ENST00000542002 EDN1P05305 212 aa10.79□□□□□ -0.68
YBX3-212ENST00000542002 HSP90AA1P07900 732 aaKnown RBP10.79□□□□□ -0.68
YBX3-212ENST00000542002 STAG3L1P0CL83 205 aa10.79□□□□□ -0.68
YBX3-212ENST00000542002 POU3F3P20264 500 aaPredicted RBP10.79□□□□□ -0.68
YBX3-212ENST00000542002 SFPQP23246 707 aaKnown RBP eCLIP10.79□□□□□ -0.68
YBX3-212ENST00000542002 LONP1P36776 959 aaKnown RBP10.79□□□□□ -0.68
YBX3-212ENST00000542002 BMPR1AP36894 532 aa10.79□□□□□ -0.68
YBX3-212ENST00000542002 PHKA2P46019 1235 aa10.79□□□□□ -0.68
YBX3-212ENST00000542002 NASPP49321 788 aaPredicted RBP10.79□□□□□ -0.68
YBX3-212ENST00000542002 AFF1P51825 1210 aaKnown RBP10.79□□□□□ -0.68
YBX3-212ENST00000542002 MAPK7Q13164 816 aa10.79□□□□□ -0.68
YBX3-212ENST00000542002 KARSQ15046 597 aaKnown RBP10.79□□□□□ -0.68
YBX3-212ENST00000542002 CCDC85BQ15834 202 aaPredicted RBP10.79□□□□□ -0.68
YBX3-212ENST00000542002 FAM43BQ6ZT52 329 aaPredicted RBP10.79□□□□□ -0.68
YBX3-212ENST00000542002 SYT2Q8N9I0 419 aaPredicted RBP10.79□□□□□ -0.68
YBX3-212ENST00000542002 RNF169Q8NCN4 708 aa10.79□□□□□ -0.68
YBX3-212ENST00000542002 LINC00301Q8NCQ3 95 aa10.79□□□□□ -0.68
YBX3-212ENST00000542002 MCPH1Q8NEM0 835 aa10.79□□□□□ -0.68
YBX3-212ENST00000542002 MAFAQ8NHW3 353 aaPredicted RBP10.79□□□□□ -0.68
YBX3-212ENST00000542002 LPPQ93052 612 aa10.79□□□□□ -0.68
YBX3-212ENST00000542002 CPB2Q96IY4 423 aa10.79□□□□□ -0.68
YBX3-212ENST00000542002 CCDC43Q96MW1 224 aaKnown RBP10.79□□□□□ -0.68
YBX3-212ENST00000542002 KIFC3Q9BVG8 833 aa10.79□□□□□ -0.68
YBX3-212ENST00000542002 TRAIPQ9BWF2 469 aa10.79□□□□□ -0.68
YBX3-212ENST00000542002 EIF2AQ9BY44 585 aaKnown RBP10.79□□□□□ -0.68
YBX3-212ENST00000542002 NFKBIZQ9BYH8 718 aa10.79□□□□□ -0.68
YBX3-212ENST00000542002 PRDM6Q9NQX0 595 aa10.79□□□□□ -0.68
YBX3-212ENST00000542002 TYW1Q9NV66 732 aaKnown RBP10.79□□□□□ -0.68
YBX3-212ENST00000542002 LRFN2Q9ULH4 789 aa10.79□□□□□ -0.68
YBX3-212ENST00000542002 TTC3P53804 2025 aa10.79□□□□□ -0.68
YBX3-212ENST00000542002 LOXHD1Q8IVV2 1947 aa10.78□□□□□ -0.68
YBX3-212ENST00000542002 LRRIQ4A6NIV6 560 aa10.78□□□□□ -0.68
YBX3-212ENST00000542002 INO80B-WBP1J3KQ70 363 aa10.78□□□□□ -0.68
YBX3-212ENST00000542002 ZNF623O75123 536 aa10.78□□□□□ -0.68
YBX3-212ENST00000542002 HIP1RO75146 1068 aa10.78□□□□□ -0.68
YBX3-212ENST00000542002 EOMESO95936 686 aa10.78□□□□□ -0.68
YBX3-212ENST00000542002 F13A1P00488 732 aa10.78□□□□□ -0.68
YBX3-212ENST00000542002 PLA2G4BP0C869 781 aa10.78□□□□□ -0.68
YBX3-212ENST00000542002 ARF4P18085 180 aaPredicted RBP10.78□□□□□ -0.68
YBX3-212ENST00000542002 PLCG1P19174 1290 aa10.78□□□□□ -0.68
YBX3-212ENST00000542002 UBA7P41226 1012 aa10.78□□□□□ -0.68
YBX3-212ENST00000542002 RAD51AP2Q09MP3 1159 aa10.78□□□□□ -0.68
YBX3-212ENST00000542002 CAMK1Q14012 370 aa10.78□□□□□ -0.68
YBX3-212ENST00000542002 TFDP1Q14186 410 aa10.78□□□□□ -0.68
YBX3-212ENST00000542002 CDCA2Q69YH5 1023 aaPredicted RBP10.78□□□□□ -0.68
YBX3-212ENST00000542002 TWF2Q6IBS0 349 aaKnown RBP10.78□□□□□ -0.68
YBX3-212ENST00000542002 MRPL10Q7Z7H8 261 aaKnown RBP10.78□□□□□ -0.68
YBX3-212ENST00000542002 CDR2LQ86X02 465 aaPredicted RBP10.78□□□□□ -0.68
YBX3-212ENST00000542002 CMTR2Q8IYT2 770 aaKnown RBP10.78□□□□□ -0.68
YBX3-212ENST00000542002 SMG8Q8ND04 991 aaKnown RBP10.78□□□□□ -0.68
YBX3-212ENST00000542002 FBXO22Q8NEZ5 403 aa10.78□□□□□ -0.68
YBX3-212ENST00000542002 PPM1EQ8WY54 764 aa10.78□□□□□ -0.68
YBX3-212ENST00000542002 GAS2L1Q99501 681 aaPredicted RBP10.78□□□□□ -0.68
YBX3-212ENST00000542002 PANK2Q9BZ23 570 aa10.78□□□□□ -0.68
YBX3-212ENST00000542002 CCSER1Q9C0I3 900 aa10.78□□□□□ -0.68
YBX3-212ENST00000542002 CCDC113Q9H0I3 377 aa10.78□□□□□ -0.68
YBX3-212ENST00000542002 FZD8Q9H461 694 aa10.78□□□□□ -0.68
YBX3-212ENST00000542002 CWH43Q9H720 699 aa10.78□□□□□ -0.68
YBX3-212ENST00000542002 FAM105AQ9NUU6 356 aa10.78□□□□□ -0.68
YBX3-212ENST00000542002 DACT1Q9NYF0 836 aa10.78□□□□□ -0.68
YBX3-212ENST00000542002 DAXXQ9UER7 740 aaPredicted RBP10.78□□□□□ -0.68
YBX3-212ENST00000542002 PCDHB2Q9Y5E7 798 aa10.78□□□□□ -0.68
YBX3-212ENST00000542002 TRANK1O15050 2925 aa10.78□□□□□ -0.68
YBX3-212ENST00000542002 A0A087X0B3 334 aa10.77□□□□□ -0.69
YBX3-212ENST00000542002 A0A1B0GUA9 196 aa10.77□□□□□ -0.69
YBX3-212ENST00000542002 C19orf67A6NJJ6 358 aa10.77□□□□□ -0.69
YBX3-212ENST00000542002 C5orf67F2Z3F1 127 aa10.77□□□□□ -0.69
YBX3-212ENST00000542002 H3BNC9 293 aa10.77□□□□□ -0.69
YBX3-212ENST00000542002 GRM6O15303 877 aa10.77□□□□□ -0.69
YBX3-212ENST00000542002 OFD1O75665 1012 aa10.77□□□□□ -0.69
YBX3-212ENST00000542002 SSBP05455 408 aaKnown RBP eCLIP10.77□□□□□ -0.69
YBX3-212ENST00000542002 DNAJB1P25685 340 aa10.77□□□□□ -0.69
YBX3-212ENST00000542002 NPTX2P47972 431 aa10.77□□□□□ -0.69
YBX3-212ENST00000542002 GPM6BQ13491 265 aa10.77□□□□□ -0.69
YBX3-212ENST00000542002 MCM6Q14566 821 aa10.77□□□□□ -0.69
YBX3-212ENST00000542002 NAALADL2Q58DX5 795 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms