RNA–Protein interactions for RNA: ENST00000540891.1

CD9-209, Transcript of CD9 molecule, humanhuman

TSL 3

Gene CD9, Length 642 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD9-209ENST00000540891 NLRC5Q86WI3 1866 aa18.73■□□□□ 0.59
CD9-209ENST00000540891 TBKBP1A7MCY6 615 aa18.72■□□□□ 0.59
CD9-209ENST00000540891 INO80B-WBP1J3KQ70 363 aa18.72■□□□□ 0.59
CD9-209ENST00000540891 TSPAN1O60635 241 aa18.72■□□□□ 0.59
CD9-209ENST00000540891 LONP1P36776 959 aaKnown RBP18.72■□□□□ 0.59
CD9-209ENST00000540891 BMPR1AP36894 532 aa18.72■□□□□ 0.59
CD9-209ENST00000540891 CLLU1OSQ5K130 101 aa18.72■□□□□ 0.59
CD9-209ENST00000540891 CDCA2Q69YH5 1023 aaPredicted RBP18.72■□□□□ 0.59
CD9-209ENST00000540891 TWF2Q6IBS0 349 aaKnown RBP18.72■□□□□ 0.59
CD9-209ENST00000540891 RINT1Q6NUQ1 792 aa18.72■□□□□ 0.59
CD9-209ENST00000540891 C1orf186Q6ZWK4 172 aa18.72■□□□□ 0.59
CD9-209ENST00000540891 CASD1Q96PB1 797 aa18.72■□□□□ 0.59
CD9-209ENST00000540891 FAM105AQ9NUU6 356 aa18.72■□□□□ 0.59
CD9-209ENST00000540891 MORC2Q9Y6X9 1032 aaPredicted RBP18.72■□□□□ 0.59
CD9-209ENST00000540891 LRRIQ4A6NIV6 560 aa18.71■□□□□ 0.59
CD9-209ENST00000540891 H3BNC9 293 aa18.71■□□□□ 0.59
CD9-209ENST00000540891 EOMESO95936 686 aa18.71■□□□□ 0.59
CD9-209ENST00000540891 CTNNB1P35222 781 aa18.71■□□□□ 0.59
CD9-209ENST00000540891 NASPP49321 788 aaPredicted RBP18.71■□□□□ 0.59
CD9-209ENST00000540891 PCBP1Q15365 356 aaKnown RBP eCLIP18.71■□□□□ 0.59
CD9-209ENST00000540891 FOXD4L5Q5VV16 416 aaPredicted RBP18.71■□□□□ 0.59
CD9-209ENST00000540891 LRRC55Q6ZSA7 311 aa18.71■□□□□ 0.59
CD9-209ENST00000540891 USP49Q70CQ1 688 aa18.71■□□□□ 0.59
CD9-209ENST00000540891 DAW1Q8N136 415 aa18.71■□□□□ 0.59
CD9-209ENST00000540891 KCTD17Q8N5Z5 321 aa18.71■□□□□ 0.59
CD9-209ENST00000540891 RNF169Q8NCN4 708 aa18.71■□□□□ 0.59
CD9-209ENST00000540891 FOXD4L4Q8WXT5 416 aaPredicted RBP18.71■□□□□ 0.59
CD9-209ENST00000540891 TMEM117Q9H0C3 514 aa18.71■□□□□ 0.59
CD9-209ENST00000540891 NT5C3AQ9H0P0 336 aa18.71■□□□□ 0.59
CD9-209ENST00000540891 CSRNP2Q9H175 543 aa18.71■□□□□ 0.59
CD9-209ENST00000540891 SRPRBQ9Y5M8 271 aaKnown RBP18.71■□□□□ 0.59
CD9-209ENST00000540891 KIAA1671Q9BY89 1806 aa18.71■□□□□ 0.59
CD9-209ENST00000540891 MEIS3P2A8K0S8 358 aa18.7■□□□□ 0.58
CD9-209ENST00000540891 TRANK1O15050 2925 aa18.7■□□□□ 0.58
CD9-209ENST00000540891 B4GALT5O43286 388 aa18.7■□□□□ 0.58
CD9-209ENST00000540891 SLC26A4O43511 780 aa18.7■□□□□ 0.58
CD9-209ENST00000540891 ZNF623O75123 536 aa18.7■□□□□ 0.58
CD9-209ENST00000540891 ERLIN2O94905 339 aa18.7■□□□□ 0.58
CD9-209ENST00000540891 ZSCAN22P10073 491 aaPredicted RBP18.7■□□□□ 0.58
CD9-209ENST00000540891 UBA7P41226 1012 aa18.7■□□□□ 0.58
CD9-209ENST00000540891 NAMPTP43490 491 aa18.7■□□□□ 0.58
CD9-209ENST00000540891 SLC12A3P55017 1021 aa18.7■□□□□ 0.58
CD9-209ENST00000540891 MAPK7Q13164 816 aa18.7■□□□□ 0.58
CD9-209ENST00000540891 GPM6BQ13491 265 aa18.7■□□□□ 0.58
CD9-209ENST00000540891 SLC39A14Q15043 492 aa18.7■□□□□ 0.58
CD9-209ENST00000540891 KARSQ15046 597 aaKnown RBP18.7■□□□□ 0.58
CD9-209ENST00000540891 SPECC1Q5M775 1068 aa18.7■□□□□ 0.58
CD9-209ENST00000540891 SYT2Q8N9I0 419 aaPredicted RBP18.7■□□□□ 0.58
CD9-209ENST00000540891 LPPQ93052 612 aa18.7■□□□□ 0.58
CD9-209ENST00000540891 CPB2Q96IY4 423 aa18.7■□□□□ 0.58
CD9-209ENST00000540891 CLIC6Q96NY7 704 aa18.7■□□□□ 0.58
CD9-209ENST00000540891 KIFC3Q9BVG8 833 aa18.7■□□□□ 0.58
CD9-209ENST00000540891 CWH43Q9H720 699 aa18.7■□□□□ 0.58
CD9-209ENST00000540891 BLOC1S4Q9NUP1 217 aa18.7■□□□□ 0.58
CD9-209ENST00000540891 RWDD3Q9Y3V2 267 aa18.7■□□□□ 0.58
CD9-209ENST00000540891 HOXA2O43364 376 aa18.69■□□□□ 0.58
CD9-209ENST00000540891 GTPBP6O43824 516 aaPredicted RBP18.69■□□□□ 0.58
CD9-209ENST00000540891 HIP1RO75146 1068 aa18.69■□□□□ 0.58
CD9-209ENST00000540891 F13A1P00488 732 aa18.69■□□□□ 0.58
CD9-209ENST00000540891 RB1P06400 928 aa18.69■□□□□ 0.58
CD9-209ENST00000540891 PLA2G4BP0C869 781 aa18.69■□□□□ 0.58
CD9-209ENST00000540891 PDIA4P13667 645 aaKnown RBP18.69■□□□□ 0.58
CD9-209ENST00000540891 ARF4P18085 180 aaPredicted RBP18.69■□□□□ 0.58
CD9-209ENST00000540891 CCDC85BQ15834 202 aaPredicted RBP18.69■□□□□ 0.58
CD9-209ENST00000540891 LONRF3Q496Y0 759 aa18.69■□□□□ 0.58
CD9-209ENST00000540891 PPP4R3CPQ6ZMV5 832 aa18.69■□□□□ 0.58
CD9-209ENST00000540891 HELQQ8TDG4 1101 aa18.69■□□□□ 0.58
CD9-209ENST00000540891 PPM1EQ8WY54 764 aa18.69■□□□□ 0.58
CD9-209ENST00000540891 KIFAP3Q92845 792 aa18.69■□□□□ 0.58
CD9-209ENST00000540891 EPSTI1Q96J88 318 aa18.69■□□□□ 0.58
CD9-209ENST00000540891 CDK5RAP3Q96JB5 506 aa18.69■□□□□ 0.58
CD9-209ENST00000540891 CCSER1Q9C0I3 900 aa18.69■□□□□ 0.58
CD9-209ENST00000540891 CCDC113Q9H0I3 377 aa18.69■□□□□ 0.58
CD9-209ENST00000540891 FZD8Q9H461 694 aa18.69■□□□□ 0.58
CD9-209ENST00000540891 TYW1Q9NV66 732 aaKnown RBP18.69■□□□□ 0.58
CD9-209ENST00000540891 LMCD1Q9NZU5 365 aa18.69■□□□□ 0.58
CD9-209ENST00000540891 PCDHB2Q9Y5E7 798 aa18.69■□□□□ 0.58
CD9-209ENST00000540891 MYH15Q9Y2K3 1946 aa18.68■□□□□ 0.58
CD9-209ENST00000540891 PRRC2BQ5JSZ5 2229 aaKnown RBP18.68■□□□□ 0.58
CD9-209ENST00000540891 TTLL13PA6NNM8 815 aa18.68■□□□□ 0.58
CD9-209ENST00000540891 EDN1P05305 212 aa18.68■□□□□ 0.58
CD9-209ENST00000540891 SKIP12755 728 aa18.68■□□□□ 0.58
CD9-209ENST00000540891 PLCG1P19174 1290 aa18.68■□□□□ 0.58
CD9-209ENST00000540891 GUCY2CP25092 1073 aa18.68■□□□□ 0.58
CD9-209ENST00000540891 AXLP30530 894 aa18.68■□□□□ 0.58
CD9-209ENST00000540891 RAB27AP51159 221 aa18.68■□□□□ 0.58
CD9-209ENST00000540891 MRPL10Q7Z7H8 261 aaKnown RBP18.68■□□□□ 0.58
CD9-209ENST00000540891 ZBTB8OSQ8IWT0 167 aa18.68■□□□□ 0.58
CD9-209ENST00000540891 MICALL1Q8N3F8 863 aa18.68■□□□□ 0.58
CD9-209ENST00000540891 LINC00301Q8NCQ3 95 aa18.68■□□□□ 0.58
CD9-209ENST00000540891 SMG8Q8ND04 991 aaKnown RBP18.68■□□□□ 0.58
CD9-209ENST00000540891 CALML4Q96GE6 196 aa18.68■□□□□ 0.58
CD9-209ENST00000540891 PLVAPQ9BX97 442 aa18.68■□□□□ 0.58
CD9-209ENST00000540891 EIF2AQ9BY44 585 aaKnown RBP18.68■□□□□ 0.58
CD9-209ENST00000540891 PRDM6Q9NQX0 595 aa18.68■□□□□ 0.58
CD9-209ENST00000540891 TFIP11Q9UBB9 837 aaKnown RBP18.68■□□□□ 0.58
CD9-209ENST00000540891 PRUNE2Q8WUY3 3088 aa18.68■□□□□ 0.58
CD9-209ENST00000540891 GRM6O15303 877 aa18.67■□□□□ 0.58
CD9-209ENST00000540891 SSBP05455 408 aaKnown RBP eCLIP18.67■□□□□ 0.58
CD9-209ENST00000540891 PPP2R5AQ15172 486 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms