RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.87□□□□□ -0.35
RTN3-209ENST00000538995 MED24O75448 989 aa12.86□□□□□ -0.35
RTN3-209ENST00000538995 SRGAP2CP0DJJ0 459 aa12.86□□□□□ -0.35
RTN3-209ENST00000538995 AXLP30530 894 aa12.86□□□□□ -0.35
RTN3-209ENST00000538995 ARL2P36404 184 aa12.86□□□□□ -0.35
RTN3-209ENST00000538995 TECP42680 631 aa12.86□□□□□ -0.35
RTN3-209ENST00000538995 KCNQ1P51787 676 aa12.86□□□□□ -0.35
RTN3-209ENST00000538995 PTENP60484 403 aa12.86□□□□□ -0.35
RTN3-209ENST00000538995 CAMK1Q14012 370 aa12.86□□□□□ -0.35
RTN3-209ENST00000538995 PUS10Q3MIT2 529 aaKnown RBP12.86□□□□□ -0.35
RTN3-209ENST00000538995 RILPL1Q5EBL4 403 aa12.86□□□□□ -0.35
RTN3-209ENST00000538995 CLLU1OSQ5K130 101 aa12.86□□□□□ -0.35
RTN3-209ENST00000538995 PDE12Q6L8Q7 609 aaKnown RBP12.86□□□□□ -0.35
RTN3-209ENST00000538995 C4orf32Q8N8J7 132 aa12.86□□□□□ -0.35
RTN3-209ENST00000538995 RNF169Q8NCN4 708 aa12.86□□□□□ -0.35
RTN3-209ENST00000538995 MCPH1Q8NEM0 835 aa12.86□□□□□ -0.35
RTN3-209ENST00000538995 PIGOQ8TEQ8 1089 aa12.86□□□□□ -0.35
RTN3-209ENST00000538995 POF1BQ8WVV4 589 aa12.86□□□□□ -0.35
RTN3-209ENST00000538995 CCDC51Q96ER9 411 aa12.86□□□□□ -0.35
RTN3-209ENST00000538995 BMP2KQ9NSY1 1161 aaPredicted RBP12.86□□□□□ -0.35
RTN3-209ENST00000538995 FAM105AQ9NUU6 356 aa12.86□□□□□ -0.35
RTN3-209ENST00000538995 ARID2Q68CP9 1835 aa12.85□□□□□ -0.35
RTN3-209ENST00000538995 FSD2A1L4K1 749 aa12.85□□□□□ -0.35
RTN3-209ENST00000538995 TNFRSF10AO00220 468 aa12.85□□□□□ -0.35
RTN3-209ENST00000538995 FGF18O76093 207 aa12.85□□□□□ -0.35
RTN3-209ENST00000538995 ERLIN2O94905 339 aa12.85□□□□□ -0.35
RTN3-209ENST00000538995 KCNA5P22460 613 aa12.85□□□□□ -0.35
RTN3-209ENST00000538995 GJB2P29033 226 aa12.85□□□□□ -0.35
RTN3-209ENST00000538995 PRPHP41219 470 aa12.85□□□□□ -0.35
RTN3-209ENST00000538995 TOB1P50616 345 aaPredicted RBP12.85□□□□□ -0.35
RTN3-209ENST00000538995 PLCB3Q01970 1234 aa12.85□□□□□ -0.35
RTN3-209ENST00000538995 PDIA5Q14554 519 aa12.85□□□□□ -0.35
RTN3-209ENST00000538995 CTC1Q2NKJ3 1217 aa12.85□□□□□ -0.35
RTN3-209ENST00000538995 GLB1LQ6UWU2 654 aa12.85□□□□□ -0.35
RTN3-209ENST00000538995 THNSL1Q8IYQ7 743 aa12.85□□□□□ -0.35
RTN3-209ENST00000538995 IGSF22Q8N9C0 903 aa12.85□□□□□ -0.35
RTN3-209ENST00000538995 PGBD4Q96DM1 585 aa12.85□□□□□ -0.35
RTN3-209ENST00000538995 ZNF558Q96NG5 402 aa12.85□□□□□ -0.35
RTN3-209ENST00000538995 MINDY3Q9H8M7 445 aa12.85□□□□□ -0.35
RTN3-209ENST00000538995 SMC3Q9UQE7 1217 aa12.85□□□□□ -0.35
RTN3-209ENST00000538995 FNDC1Q4ZHG4 1894 aaPredicted RBP12.85□□□□□ -0.35
RTN3-209ENST00000538995 KIAA1671Q9BY89 1806 aa12.84□□□□□ -0.35
RTN3-209ENST00000538995 H3BQV1 296 aa12.84□□□□□ -0.35
RTN3-209ENST00000538995 USO1O60763 962 aaKnown RBP12.84□□□□□ -0.35
RTN3-209ENST00000538995 GLRA2P23416 452 aa12.84□□□□□ -0.35
RTN3-209ENST00000538995 DNAJB1P25685 340 aa12.84□□□□□ -0.35
RTN3-209ENST00000538995 HOXA11P31270 313 aaPredicted RBP12.84□□□□□ -0.35
RTN3-209ENST00000538995 NCBP1Q09161 790 aaKnown RBP12.84□□□□□ -0.35
RTN3-209ENST00000538995 HYAL1Q12794 435 aa12.84□□□□□ -0.35
RTN3-209ENST00000538995 PTGDRQ13258 359 aa12.84□□□□□ -0.35
RTN3-209ENST00000538995 CAPSQ13938 189 aa12.84□□□□□ -0.35
RTN3-209ENST00000538995 NBR1Q14596 966 aa12.84□□□□□ -0.35
RTN3-209ENST00000538995 MCTP1Q6DN14 999 aa12.84□□□□□ -0.35
RTN3-209ENST00000538995 POTEGQ6S5H5 508 aa12.84□□□□□ -0.35
RTN3-209ENST00000538995 KCNT2Q6UVM3 1135 aa12.84□□□□□ -0.35
RTN3-209ENST00000538995 LRRC55Q6ZSA7 311 aa12.84□□□□□ -0.35
RTN3-209ENST00000538995 MRPL10Q7Z7H8 261 aaKnown RBP12.84□□□□□ -0.35
RTN3-209ENST00000538995 CNNM3Q8NE01 707 aa12.84□□□□□ -0.35
RTN3-209ENST00000538995 HELQQ8TDG4 1101 aa12.84□□□□□ -0.35
RTN3-209ENST00000538995 ASAP3Q8TDY4 903 aa12.84□□□□□ -0.35
RTN3-209ENST00000538995 POLR3FQ9H1D9 316 aaPredicted RBP12.84□□□□□ -0.35
RTN3-209ENST00000538995 TLR9Q9NR96 1032 aa12.84□□□□□ -0.35
RTN3-209ENST00000538995 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.84□□□□□ -0.35
RTN3-209ENST00000538995 HCSTQ9UBK5 93 aa12.84□□□□□ -0.35
RTN3-209ENST00000538995 LRWD1Q9UFC0 647 aa12.84□□□□□ -0.35
RTN3-209ENST00000538995 PUF60Q9UHX1 559 aaKnown RBP12.84□□□□□ -0.35
RTN3-209ENST00000538995 FAM50BQ9Y247 325 aa12.84□□□□□ -0.35
RTN3-209ENST00000538995 PCDHB6Q9Y5E3 794 aa12.84□□□□□ -0.35
RTN3-209ENST00000538995 PCDHB2Q9Y5E7 798 aa12.84□□□□□ -0.35
RTN3-209ENST00000538995 CNTNAP2Q9UHC6 1331 aa12.84□□□□□ -0.35
RTN3-209ENST00000538995 ARHGEF35A5YM69 484 aa12.83□□□□□ -0.36
RTN3-209ENST00000538995 INO80B-WBP1J3KQ70 363 aa12.83□□□□□ -0.36
RTN3-209ENST00000538995 TSPAN1O60635 241 aa12.83□□□□□ -0.36
RTN3-209ENST00000538995 CCT6AP40227 531 aaKnown RBP12.83□□□□□ -0.36
RTN3-209ENST00000538995 MBTD1Q05BQ5 628 aa12.83□□□□□ -0.36
RTN3-209ENST00000538995 NOMO2Q5JPE7 1267 aa12.83□□□□□ -0.36
RTN3-209ENST00000538995 CDCA2Q69YH5 1023 aaPredicted RBP12.83□□□□□ -0.36
RTN3-209ENST00000538995 NOTUMQ6P988 496 aa12.83□□□□□ -0.36
RTN3-209ENST00000538995 MRPS27Q92552 414 aaKnown RBP12.83□□□□□ -0.36
RTN3-209ENST00000538995 CDCA3Q99618 268 aaPredicted RBP12.83□□□□□ -0.36
RTN3-209ENST00000538995 UBN1Q9NPG3 1134 aa12.83□□□□□ -0.36
RTN3-209ENST00000538995 CLDND1Q9NY35 253 aa12.83□□□□□ -0.36
RTN3-209ENST00000538995 SPG21Q9NZD8 308 aa12.83□□□□□ -0.36
RTN3-209ENST00000538995 DAXXQ9UER7 740 aaPredicted RBP12.83□□□□□ -0.36
RTN3-209ENST00000538995 MYO7AQ13402 2215 aa12.82□□□□□ -0.36
RTN3-209ENST00000538995 FSCN2O14926 492 aa12.82□□□□□ -0.36
RTN3-209ENST00000538995 CYP11B2P19099 503 aa12.82□□□□□ -0.36
RTN3-209ENST00000538995 NCLP19338 710 aaKnown RBP12.82□□□□□ -0.36
RTN3-209ENST00000538995 IRS1P35568 1242 aa12.82□□□□□ -0.36
RTN3-209ENST00000538995 ALDH7A1P49419 539 aaKnown RBP12.82□□□□□ -0.36
RTN3-209ENST00000538995 ATP2C1P98194 919 aaPredicted RBP12.82□□□□□ -0.36
RTN3-209ENST00000538995 KRT17Q04695 432 aa12.82□□□□□ -0.36
RTN3-209ENST00000538995 CUL4AQ13619 759 aa12.82□□□□□ -0.36
RTN3-209ENST00000538995 AMHR2Q16671 573 aa12.82□□□□□ -0.36
RTN3-209ENST00000538995 UBXN11Q5T124 520 aa12.82□□□□□ -0.36
RTN3-209ENST00000538995 KRT79Q5XKE5 535 aa12.82□□□□□ -0.36
RTN3-209ENST00000538995 PADI6Q6TGC4 694 aa12.82□□□□□ -0.36
RTN3-209ENST00000538995 DTHD1Q6ZMT9 781 aa12.82□□□□□ -0.36
RTN3-209ENST00000538995 SLC39A11Q8N1S5 342 aa12.82□□□□□ -0.36
RTN3-209ENST00000538995 KCTD17Q8N5Z5 321 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms