RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 SPINK2P20155 84 aa10.46□□□□□ -0.74
USP28-205ENST00000537706 RDXP35241 583 aaKnown RBP10.46□□□□□ -0.74
USP28-205ENST00000537706 FNTBP49356 437 aa10.46□□□□□ -0.74
USP28-205ENST00000537706 HNRNPUQ00839 825 aaKnown RBP eCLIP10.46□□□□□ -0.74
USP28-205ENST00000537706 TMEM173Q86WV6 379 aaPredicted RBP10.46□□□□□ -0.74
USP28-205ENST00000537706 ZNF707Q96C28 371 aaPredicted RBP10.46□□□□□ -0.74
USP28-205ENST00000537706 SCLT1Q96NL6 688 aa10.46□□□□□ -0.74
USP28-205ENST00000537706 RPS6KC1Q96S38 1066 aa10.46□□□□□ -0.74
USP28-205ENST00000537706 HERC2P3Q9BVR0 1158 aa10.46□□□□□ -0.74
USP28-205ENST00000537706 INPP5FQ9Y2H2 1132 aa10.46□□□□□ -0.74
USP28-205ENST00000537706 FAN1Q9Y2M0 1017 aa10.46□□□□□ -0.74
USP28-205ENST00000537706 NEUROG3Q9Y4Z2 214 aa10.46□□□□□ -0.74
USP28-205ENST00000537706 PPP1R11O60927 126 aaPredicted RBP10.45□□□□□ -0.74
USP28-205ENST00000537706 ATP9AO75110 1047 aa10.45□□□□□ -0.74
USP28-205ENST00000537706 FGAP02671 866 aa10.45□□□□□ -0.74
USP28-205ENST00000537706 SOD2P04179 222 aa10.45□□□□□ -0.74
USP28-205ENST00000537706 ALDH2P05091 517 aa10.45□□□□□ -0.74
USP28-205ENST00000537706 TMOD1P28289 359 aa10.45□□□□□ -0.74
USP28-205ENST00000537706 SLC11A1P49279 550 aa10.45□□□□□ -0.74
USP28-205ENST00000537706 HAND2P61296 217 aa10.45□□□□□ -0.74
USP28-205ENST00000537706 C19orf57Q0VDD7 668 aa10.45□□□□□ -0.74
USP28-205ENST00000537706 ZNF598Q86UK7 904 aaKnown RBP10.45□□□□□ -0.74
USP28-205ENST00000537706 METTL13Q8N6R0 699 aa10.45□□□□□ -0.74
USP28-205ENST00000537706 GLIS3Q8NEA6 775 aa10.45□□□□□ -0.74
USP28-205ENST00000537706 ST13P5Q8NFI4 369 aaPredicted RBP10.45□□□□□ -0.74
USP28-205ENST00000537706 DNASE1L2Q92874 299 aa10.45□□□□□ -0.74
USP28-205ENST00000537706 ZSCAN10Q96SZ4 725 aaPredicted RBP10.45□□□□□ -0.74
USP28-205ENST00000537706 PCYT2Q99447 389 aa10.45□□□□□ -0.74
USP28-205ENST00000537706 TBC1D13Q9NVG8 400 aa10.45□□□□□ -0.74
USP28-205ENST00000537706 PCDHGA5Q9Y5G8 931 aa10.45□□□□□ -0.74
USP28-205ENST00000537706 ZMYM6O95789 1325 aa10.45□□□□□ -0.74
USP28-205ENST00000537706 PNMA6FA0A0J9YX94 578 aa10.45□□□□□ -0.74
USP28-205ENST00000537706 BACH1O14867 736 aa10.45□□□□□ -0.74
USP28-205ENST00000537706 TEX28O15482 410 aa10.45□□□□□ -0.74
USP28-205ENST00000537706 LILRB3O75022 631 aa10.45□□□□□ -0.74
USP28-205ENST00000537706 EPN2O95208 641 aa10.45□□□□□ -0.74
USP28-205ENST00000537706 MYBP10242 640 aa10.45□□□□□ -0.74
USP28-205ENST00000537706 GLUD2P49448 558 aa10.45□□□□□ -0.74
USP28-205ENST00000537706 CREMQ03060 361 aa10.45□□□□□ -0.74
USP28-205ENST00000537706 KXD1Q9BQD3 176 aa10.45□□□□□ -0.74
USP28-205ENST00000537706 TMEM175Q9BSA9 504 aa10.45□□□□□ -0.74
USP28-205ENST00000537706 LMAN1LQ9HAT1 526 aa10.45□□□□□ -0.74
USP28-205ENST00000537706 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.45□□□□□ -0.74
USP28-205ENST00000537706 VPS45Q9NRW7 570 aa10.45□□□□□ -0.74
USP28-205ENST00000537706 AKT3Q9Y243 479 aa10.45□□□□□ -0.74
USP28-205ENST00000537706 ANKRD11Q6UB99 2663 aaPredicted RBP10.44□□□□□ -0.74
USP28-205ENST00000537706 TTC41PQ6P2S7 1318 aa10.44□□□□□ -0.74
USP28-205ENST00000537706 FOXP2O15409 715 aa10.44□□□□□ -0.74
USP28-205ENST00000537706 XYLBO75191 536 aa10.44□□□□□ -0.74
USP28-205ENST00000537706 GPR32O75388 356 aa10.44□□□□□ -0.74
USP28-205ENST00000537706 PAPLNO95428 1278 aa10.44□□□□□ -0.74
USP28-205ENST00000537706 VTNP04004 478 aa10.44□□□□□ -0.74
USP28-205ENST00000537706 CEACAM1P13688 526 aa10.44□□□□□ -0.74
USP28-205ENST00000537706 EIF4BP23588 611 aaKnown RBP10.44□□□□□ -0.74
USP28-205ENST00000537706 ACTR2P61160 394 aa10.44□□□□□ -0.74
USP28-205ENST00000537706 LRRC32Q14392 662 aa10.44□□□□□ -0.74
USP28-205ENST00000537706 VPS53Q5VIR6 699 aa10.44□□□□□ -0.74
USP28-205ENST00000537706 C19orf48Q6RUI8 117 aa10.44□□□□□ -0.74
USP28-205ENST00000537706 CACNA2D4Q7Z3S7 1137 aa10.44□□□□□ -0.74
USP28-205ENST00000537706 BCL7CQ8WUZ0 217 aaPredicted RBP10.44□□□□□ -0.74
USP28-205ENST00000537706 PGBD4Q96DM1 585 aa10.44□□□□□ -0.74
USP28-205ENST00000537706 PIGSQ96S52 555 aa10.44□□□□□ -0.74
USP28-205ENST00000537706 UBAC1Q9BSL1 405 aa10.44□□□□□ -0.74
USP28-205ENST00000537706 CHST12Q9NRB3 414 aa10.44□□□□□ -0.74
USP28-205ENST00000537706 HELLSQ9NRZ9 838 aa10.44□□□□□ -0.74
USP28-205ENST00000537706 KANSL3Q9P2N6 904 aa10.44□□□□□ -0.74
USP28-205ENST00000537706 RAB27AP51159 221 aa10.43□□□□□ -0.74
USP28-205ENST00000537706 SATB1Q01826 763 aa10.43□□□□□ -0.74
USP28-205ENST00000537706 SH3PXD2AQ5TCZ1 1133 aa10.43□□□□□ -0.74
USP28-205ENST00000537706 TSHZ3Q63HK5 1081 aa10.43□□□□□ -0.74
USP28-205ENST00000537706 CKAP2LQ8IYA6 745 aa10.43□□□□□ -0.74
USP28-205ENST00000537706 SPEM1Q8N4L4 309 aa10.43□□□□□ -0.74
USP28-205ENST00000537706 RXFP1Q9HBX9 757 aa10.43□□□□□ -0.74
USP28-205ENST00000537706 HEBP1Q9NRV9 189 aa10.43□□□□□ -0.74
USP28-205ENST00000537706 CEP131Q9UPN4 1083 aa10.43□□□□□ -0.74
USP28-205ENST00000537706 MSRB2Q9Y3D2 182 aa10.43□□□□□ -0.74
USP28-205ENST00000537706 MAGEB2O15479 319 aa10.43□□□□□ -0.74
USP28-205ENST00000537706 ECI2O75521 394 aa10.43□□□□□ -0.74
USP28-205ENST00000537706 ZMYND10O75800 440 aa10.43□□□□□ -0.74
USP28-205ENST00000537706 NCLP19338 710 aaKnown RBP10.43□□□□□ -0.74
USP28-205ENST00000537706 CSRP1P21291 193 aaKnown RBP10.43□□□□□ -0.74
USP28-205ENST00000537706 NLRP11P59045 1033 aaKnown RBP10.43□□□□□ -0.74
USP28-205ENST00000537706 SRSF5Q13243 272 aaKnown RBP10.43□□□□□ -0.74
USP28-205ENST00000537706 IFIT1BQ5T764 474 aaKnown RBP10.43□□□□□ -0.74
USP28-205ENST00000537706 LIN9Q5TKA1 542 aa10.43□□□□□ -0.74
USP28-205ENST00000537706 HEATR6Q6AI08 1181 aaKnown RBP10.43□□□□□ -0.74
USP28-205ENST00000537706 GRASPQ7Z6J2 395 aaPredicted RBP10.43□□□□□ -0.74
USP28-205ENST00000537706 WDR5BQ86VZ2 330 aa10.43□□□□□ -0.74
USP28-205ENST00000537706 PALB2Q86YC2 1186 aa10.43□□□□□ -0.74
USP28-205ENST00000537706 SIRT2Q8IXJ6 389 aa10.43□□□□□ -0.74
USP28-205ENST00000537706 STAG2Q8N3U4 1231 aa10.43□□□□□ -0.74
USP28-205ENST00000537706 FAM3CQ92520 227 aa10.43□□□□□ -0.74
USP28-205ENST00000537706 FGF13Q92913 245 aa10.43□□□□□ -0.74
USP28-205ENST00000537706 EDEM2Q9BV94 578 aa10.43□□□□□ -0.74
USP28-205ENST00000537706 VN1R3Q9BXE9 311 aa10.43□□□□□ -0.74
USP28-205ENST00000537706 JADE2Q9NQC1 790 aa10.43□□□□□ -0.74
USP28-205ENST00000537706 DDX19BQ9UMR2 479 aa10.43□□□□□ -0.74
USP28-205ENST00000537706 WASF3Q9UPY6 502 aa10.43□□□□□ -0.74
USP28-205ENST00000537706 LAMA4Q16363 1823 aa10.42□□□□□ -0.74
USP28-205ENST00000537706 NFASCO94856 1347 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms