RNA–Protein interactions for RNA: ENST00000535789.1

ATL3-202, Transcript of atlastin GTPase 3, humanhuman

TSL 4

Gene ATL3, Length 828 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3-202ENST00000535789 PLVAPQ9BX97 442 aa18.23■□□□□ 0.51
ATL3-202ENST00000535789 TMEM117Q9H0C3 514 aa18.23■□□□□ 0.51
ATL3-202ENST00000535789 POLR3FQ9H1D9 316 aaPredicted RBP18.23■□□□□ 0.51
ATL3-202ENST00000535789 CHST12Q9NRB3 414 aa18.23■□□□□ 0.51
ATL3-202ENST00000535789 B4GALT3O60512 393 aa18.22■□□□□ 0.51
ATL3-202ENST00000535789 TSPAN1O60635 241 aa18.22■□□□□ 0.51
ATL3-202ENST00000535789 XRCC6P12956 609 aaKnown RBP eCLIP18.22■□□□□ 0.51
ATL3-202ENST00000535789 PBX3P40426 434 aa18.22■□□□□ 0.51
ATL3-202ENST00000535789 PRPHP41219 470 aa18.22■□□□□ 0.51
ATL3-202ENST00000535789 BECN1Q14457 450 aa18.22■□□□□ 0.51
ATL3-202ENST00000535789 COL19A1Q14993 1142 aa18.22■□□□□ 0.51
ATL3-202ENST00000535789 LONRF3Q496Y0 759 aa18.22■□□□□ 0.51
ATL3-202ENST00000535789 TWF2Q6IBS0 349 aaKnown RBP18.22■□□□□ 0.51
ATL3-202ENST00000535789 KCNK18Q7Z418 384 aa18.22■□□□□ 0.51
ATL3-202ENST00000535789 EXOC8Q8IYI6 725 aa18.22■□□□□ 0.51
ATL3-202ENST00000535789 RNF169Q8NCN4 708 aa18.22■□□□□ 0.51
ATL3-202ENST00000535789 FAM105AQ9NUU6 356 aa18.22■□□□□ 0.51
ATL3-202ENST00000535789 LRWD1Q9UFC0 647 aa18.22■□□□□ 0.51
ATL3-202ENST00000535789 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.22■□□□□ 0.51
ATL3-202ENST00000535789 H3BQV1 296 aa18.21■□□□□ 0.51
ATL3-202ENST00000535789 EDN1P05305 212 aa18.21■□□□□ 0.51
ATL3-202ENST00000535789 GTF2F1P35269 517 aaKnown RBP eCLIP18.21■□□□□ 0.51
ATL3-202ENST00000535789 CCT6AP40227 531 aaKnown RBP18.21■□□□□ 0.51
ATL3-202ENST00000535789 TIGD5Q53EQ6 642 aa18.21■□□□□ 0.51
ATL3-202ENST00000535789 RILPL1Q5EBL4 403 aa18.21■□□□□ 0.51
ATL3-202ENST00000535789 LARP1BQ659C4 914 aaKnown RBP18.21■□□□□ 0.51
ATL3-202ENST00000535789 MAEAQ7L5Y9 396 aa18.21■□□□□ 0.51
ATL3-202ENST00000535789 ADGRD2Q7Z7M1 963 aa18.21■□□□□ 0.51
ATL3-202ENST00000535789 SNX29Q8TEQ0 813 aa18.21■□□□□ 0.51
ATL3-202ENST00000535789 NACC1Q96RE7 527 aa18.21■□□□□ 0.51
ATL3-202ENST00000535789 INO80BQ9C086 356 aaPredicted RBP18.21■□□□□ 0.51
ATL3-202ENST00000535789 LMAN2LQ9H0V9 348 aa18.21■□□□□ 0.51
ATL3-202ENST00000535789 NSUN3Q9H649 340 aaKnown RBP18.21■□□□□ 0.51
ATL3-202ENST00000535789 DACT1Q9NYF0 836 aa18.21■□□□□ 0.51
ATL3-202ENST00000535789 CITO14578 2027 aa18.21■□□□□ 0.51
ATL3-202ENST00000535789 PLXNA3P51805 1871 aa18.2■□□□□ 0.5
ATL3-202ENST00000535789 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP18.2■□□□□ 0.5
ATL3-202ENST00000535789 LAD1O00515 517 aa18.2■□□□□ 0.5
ATL3-202ENST00000535789 ASAP2O43150 1006 aa18.2■□□□□ 0.5
ATL3-202ENST00000535789 B4GALT5O43286 388 aa18.2■□□□□ 0.5
ATL3-202ENST00000535789 AFF1P51825 1210 aaKnown RBP18.2■□□□□ 0.5
ATL3-202ENST00000535789 MRPS5P82675 430 aaKnown RBP18.2■□□□□ 0.5
ATL3-202ENST00000535789 MXD4Q14582 209 aaPredicted RBP18.2■□□□□ 0.5
ATL3-202ENST00000535789 PTPROQ16827 1216 aa18.2■□□□□ 0.5
ATL3-202ENST00000535789 HAUS3Q68CZ6 603 aa18.2■□□□□ 0.5
ATL3-202ENST00000535789 PADI6Q6TGC4 694 aa18.2■□□□□ 0.5
ATL3-202ENST00000535789 AGMOQ6ZNB7 445 aa18.2■□□□□ 0.5
ATL3-202ENST00000535789 LRRC43Q8N309 656 aa18.2■□□□□ 0.5
ATL3-202ENST00000535789 ERMNQ8TAM6 284 aa18.2■□□□□ 0.5
ATL3-202ENST00000535789 LRRC15Q8TF66 581 aa18.2■□□□□ 0.5
ATL3-202ENST00000535789 CPB2Q96IY4 423 aa18.2■□□□□ 0.5
ATL3-202ENST00000535789 CCDC43Q96MW1 224 aaKnown RBP18.2■□□□□ 0.5
ATL3-202ENST00000535789 EIF2AQ9BY44 585 aaKnown RBP18.2■□□□□ 0.5
ATL3-202ENST00000535789 UBE2ZQ9H832 354 aaPredicted RBP18.2■□□□□ 0.5
ATL3-202ENST00000535789 POLD4Q9HCU8 107 aa18.2■□□□□ 0.5
ATL3-202ENST00000535789 DDX19AQ9NUU7 478 aaKnown RBP18.2■□□□□ 0.5
ATL3-202ENST00000535789 TTLL13PA6NNM8 815 aa18.19■□□□□ 0.5
ATL3-202ENST00000535789 E9PMD0 336 aa18.19■□□□□ 0.5
ATL3-202ENST00000535789 ZNF623O75123 536 aa18.19■□□□□ 0.5
ATL3-202ENST00000535789 EOMESO95936 686 aa18.19■□□□□ 0.5
ATL3-202ENST00000535789 BMP1P13497 986 aa18.19■□□□□ 0.5
ATL3-202ENST00000535789 MUTP22033 750 aa18.19■□□□□ 0.5
ATL3-202ENST00000535789 GRIN1Q05586 938 aa18.19■□□□□ 0.5
ATL3-202ENST00000535789 POU5F1BQ06416 359 aa18.19■□□□□ 0.5
ATL3-202ENST00000535789 HYAL1Q12794 435 aa18.19■□□□□ 0.5
ATL3-202ENST00000535789 PDIA5Q14554 519 aa18.19■□□□□ 0.5
ATL3-202ENST00000535789 CDCA2Q69YH5 1023 aaPredicted RBP18.19■□□□□ 0.5
ATL3-202ENST00000535789 SMG8Q8ND04 991 aaKnown RBP18.19■□□□□ 0.5
ATL3-202ENST00000535789 POF1BQ8WVV4 589 aa18.19■□□□□ 0.5
ATL3-202ENST00000535789 HLA-CQ95604 372 aa18.19■□□□□ 0.5
ATL3-202ENST00000535789 IPO9Q96P70 1041 aaKnown RBP18.19■□□□□ 0.5
ATL3-202ENST00000535789 NECAB3Q96P71 396 aaPredicted RBP18.19■□□□□ 0.5
ATL3-202ENST00000535789 PNMA5Q96PV4 448 aa18.19■□□□□ 0.5
ATL3-202ENST00000535789 NFKBIZQ9BYH8 718 aa18.19■□□□□ 0.5
ATL3-202ENST00000535789 BHMT2Q9H2M3 363 aa18.19■□□□□ 0.5
ATL3-202ENST00000535789 COG5Q9UP83 839 aa18.19■□□□□ 0.5
ATL3-202ENST00000535789 KIAA1024Q9UPX6 916 aa18.19■□□□□ 0.5
ATL3-202ENST00000535789 PCDHB2Q9Y5E7 798 aa18.19■□□□□ 0.5
ATL3-202ENST00000535789 VWA8A3KMH1 1905 aa18.18■□□□□ 0.5
ATL3-202ENST00000535789 HOXA2O43364 376 aa18.18■□□□□ 0.5
ATL3-202ENST00000535789 FGF18O76093 207 aa18.18■□□□□ 0.5
ATL3-202ENST00000535789 ARF4P18085 180 aaPredicted RBP18.18■□□□□ 0.5
ATL3-202ENST00000535789 CYP11B2P19099 503 aa18.18■□□□□ 0.5
ATL3-202ENST00000535789 LTBRP36941 435 aa18.18■□□□□ 0.5
ATL3-202ENST00000535789 NAALADL2Q58DX5 795 aa18.18■□□□□ 0.5
ATL3-202ENST00000535789 MRPL10Q7Z7H8 261 aaKnown RBP18.18■□□□□ 0.5
ATL3-202ENST00000535789 TMEM173Q86WV6 379 aaPredicted RBP18.18■□□□□ 0.5
ATL3-202ENST00000535789 CDR2LQ86X02 465 aaPredicted RBP18.18■□□□□ 0.5
ATL3-202ENST00000535789 RNF216Q9NWF9 866 aaPredicted RBP18.18■□□□□ 0.5
ATL3-202ENST00000535789 VPS37CA5D8V6 355 aaPredicted RBP18.17■□□□□ 0.5
ATL3-202ENST00000535789 ARHGEF35A5YM69 484 aa18.17■□□□□ 0.5
ATL3-202ENST00000535789 INO80B-WBP1J3KQ70 363 aa18.17■□□□□ 0.5
ATL3-202ENST00000535789 LINC01565O15544 149 aa18.17■□□□□ 0.5
ATL3-202ENST00000535789 OFD1O75665 1012 aa18.17■□□□□ 0.5
ATL3-202ENST00000535789 LAG3P18627 525 aa18.17■□□□□ 0.5
ATL3-202ENST00000535789 RAB27AP51159 221 aa18.17■□□□□ 0.5
ATL3-202ENST00000535789 ERVFC1P60507 584 aa18.17■□□□□ 0.5
ATL3-202ENST00000535789 DLX2Q07687 328 aaPredicted RBP18.17■□□□□ 0.5
ATL3-202ENST00000535789 RESTQ13127 1097 aa18.17■□□□□ 0.5
ATL3-202ENST00000535789 SPOUT1Q5T280 376 aaKnown RBP18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms