RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 FAM117AQ9C073 453 aa9.42□□□□□ -0.9
CD44-232ENST00000531118 CHMP4BQ9H444 224 aaKnown RBP9.42□□□□□ -0.9
CD44-232ENST00000531118 AZI2Q9H6S1 392 aa9.42□□□□□ -0.9
CD44-232ENST00000531118 SH2B1Q9NRF2 756 aaPredicted RBP9.42□□□□□ -0.9
CD44-232ENST00000531118 GMEB2Q9UKD1 530 aa9.42□□□□□ -0.9
CD44-232ENST00000531118 ANGPTL2Q9UKU9 493 aa9.42□□□□□ -0.9
CD44-232ENST00000531118 GREB1Q4ZG55 1949 aa9.42□□□□□ -0.9
CD44-232ENST00000531118 ASPMQ8IZT6 3477 aa9.41□□□□□ -0.9
CD44-232ENST00000531118 SALL3Q9BXA9 1300 aa9.41□□□□□ -0.9
CD44-232ENST00000531118 LAMTOR5O43504 91 aa9.41□□□□□ -0.9
CD44-232ENST00000531118 BCAR1P56945 870 aa9.41□□□□□ -0.9
CD44-232ENST00000531118 COL9A3Q14050 684 aaPredicted RBP9.41□□□□□ -0.9
CD44-232ENST00000531118 GIT2Q14161 759 aa9.41□□□□□ -0.9
CD44-232ENST00000531118 MCMDC2Q4G0Z9 681 aa9.41□□□□□ -0.9
CD44-232ENST00000531118 DCLRE1AQ6PJP8 1040 aa9.41□□□□□ -0.9
CD44-232ENST00000531118 PPFIBP1Q86W92 1011 aa9.41□□□□□ -0.9
CD44-232ENST00000531118 SLC44A3Q8N4M1 653 aa9.41□□□□□ -0.9
CD44-232ENST00000531118 ZBTB44Q8NCP5 570 aa9.41□□□□□ -0.9
CD44-232ENST00000531118 SMARCC2Q8TAQ2 1214 aa9.41□□□□□ -0.9
CD44-232ENST00000531118 HELQQ8TDG4 1101 aa9.41□□□□□ -0.9
CD44-232ENST00000531118 BCL7CQ8WUZ0 217 aaPredicted RBP9.41□□□□□ -0.9
CD44-232ENST00000531118 STAMQ92783 540 aa9.41□□□□□ -0.9
CD44-232ENST00000531118 COL26A1Q96A83 441 aa9.41□□□□□ -0.9
CD44-232ENST00000531118 MYADMQ96S97 322 aa9.41□□□□□ -0.9
CD44-232ENST00000531118 DCTPP1Q9H773 170 aa9.41□□□□□ -0.9
CD44-232ENST00000531118 JPH1Q9HDC5 661 aaPredicted RBP9.41□□□□□ -0.9
CD44-232ENST00000531118 SLC2A4RGQ9NR83 387 aa9.41□□□□□ -0.9
CD44-232ENST00000531118 SPATA6Q9NWH7 488 aaPredicted RBP9.41□□□□□ -0.9
CD44-232ENST00000531118 COL1A2P08123 1366 aa9.4□□□□□ -0.9
CD44-232ENST00000531118 PALM3A6NDB9 673 aaPredicted RBP9.4□□□□□ -0.9
CD44-232ENST00000531118 ZC3H11AO75152 810 aaKnown RBP eCLIP9.4□□□□□ -0.9
CD44-232ENST00000531118 NR1I2O75469 434 aa9.4□□□□□ -0.9
CD44-232ENST00000531118 ITGB5P18084 799 aa9.4□□□□□ -0.9
CD44-232ENST00000531118 PMLP29590 882 aa9.4□□□□□ -0.9
CD44-232ENST00000531118 CLCN4P51793 760 aa9.4□□□□□ -0.9
CD44-232ENST00000531118 POLGP54098 1239 aaPredicted RBP9.4□□□□□ -0.9
CD44-232ENST00000531118 CSTF1Q05048 431 aaKnown RBP9.4□□□□□ -0.9
CD44-232ENST00000531118 NMIQ13287 307 aaPredicted RBP9.4□□□□□ -0.9
CD44-232ENST00000531118 MTMR1Q13613 665 aa9.4□□□□□ -0.9
CD44-232ENST00000531118 KIZQ2M2Z5 673 aa9.4□□□□□ -0.9
CD44-232ENST00000531118 IFIT1BQ5T764 474 aaKnown RBP9.4□□□□□ -0.9
CD44-232ENST00000531118 ECHDC2Q86YB7 292 aa9.4□□□□□ -0.9
CD44-232ENST00000531118 RNF169Q8NCN4 708 aa9.4□□□□□ -0.9
CD44-232ENST00000531118 CMASQ8NFW8 434 aaPredicted RBP9.4□□□□□ -0.9
CD44-232ENST00000531118 ATRIPQ8WXE1 791 aa9.4□□□□□ -0.9
CD44-232ENST00000531118 NELL1Q92832 810 aa9.4□□□□□ -0.9
CD44-232ENST00000531118 TNPO1Q92973 898 aaKnown RBP9.4□□□□□ -0.9
CD44-232ENST00000531118 EVI5LQ96CN4 794 aa9.4□□□□□ -0.9
CD44-232ENST00000531118 UBAC1Q9BSL1 405 aa9.4□□□□□ -0.9
CD44-232ENST00000531118 VN1R3Q9BXE9 311 aa9.4□□□□□ -0.9
CD44-232ENST00000531118 BCO2Q9BYV7 579 aa9.4□□□□□ -0.9
CD44-232ENST00000531118 RIOX1Q9H6W3 641 aa9.4□□□□□ -0.9
CD44-232ENST00000531118 IL21Q9HBE4 155 aa9.4□□□□□ -0.9
CD44-232ENST00000531118 WDR6Q9NNW5 1121 aaKnown RBP9.4□□□□□ -0.9
CD44-232ENST00000531118 MAN1C1Q9NR34 630 aa9.4□□□□□ -0.9
CD44-232ENST00000531118 ZSCAN32Q9NX65 697 aa9.4□□□□□ -0.9
CD44-232ENST00000531118 SLC9A2Q9UBY0 812 aa9.4□□□□□ -0.9
CD44-232ENST00000531118 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.4□□□□□ -0.9
CD44-232ENST00000531118 SETXQ7Z333 2677 aaKnown RBP9.39□□□□□ -0.91
CD44-232ENST00000531118 F5P12259 2224 aa9.39□□□□□ -0.91
CD44-232ENST00000531118 SPAG17Q6Q759 2223 aa9.39□□□□□ -0.91
CD44-232ENST00000531118 PNMA6FA0A0J9YX94 578 aa9.39□□□□□ -0.91
CD44-232ENST00000531118 CYTH3O43739 400 aa9.39□□□□□ -0.91
CD44-232ENST00000531118 TBC1D4O60343 1298 aa9.39□□□□□ -0.91
CD44-232ENST00000531118 KLRC1P26715 233 aa9.39□□□□□ -0.91
CD44-232ENST00000531118 MAGEA9P43362 315 aa9.39□□□□□ -0.91
CD44-232ENST00000531118 ALDH7A1P49419 539 aaKnown RBP9.39□□□□□ -0.91
CD44-232ENST00000531118 CRYBB1P53674 252 aaPredicted RBP9.39□□□□□ -0.91
CD44-232ENST00000531118 STARD6P59095 220 aa9.39□□□□□ -0.91
CD44-232ENST00000531118 HTR4Q13639 388 aa9.39□□□□□ -0.91
CD44-232ENST00000531118 GRM4Q14833 912 aa9.39□□□□□ -0.91
CD44-232ENST00000531118 WTAPQ15007 396 aa9.39□□□□□ -0.91
CD44-232ENST00000531118 USP17L6PQ6QN14 398 aa9.39□□□□□ -0.91
CD44-232ENST00000531118 PLPPR4Q7Z2D5 763 aa9.39□□□□□ -0.91
CD44-232ENST00000531118 DDX53Q86TM3 631 aaKnown RBP9.39□□□□□ -0.91
CD44-232ENST00000531118 ZNF598Q86UK7 904 aaKnown RBP9.39□□□□□ -0.91
CD44-232ENST00000531118 KIAA0319LQ8IZA0 1049 aa9.39□□□□□ -0.91
CD44-232ENST00000531118 CUL5Q93034 780 aa9.39□□□□□ -0.91
CD44-232ENST00000531118 NXPE3Q969Y0 559 aa9.39□□□□□ -0.91
CD44-232ENST00000531118 IGSF21Q96ID5 467 aa9.39□□□□□ -0.91
CD44-232ENST00000531118 MTRQ99707 1265 aa9.39□□□□□ -0.91
CD44-232ENST00000531118 PRMT8Q9NR22 394 aaPredicted RBP9.39□□□□□ -0.91
CD44-232ENST00000531118 UBIAD1Q9Y5Z9 338 aa9.39□□□□□ -0.91
CD44-232ENST00000531118 SPEGQ15772 3267 aa9.39□□□□□ -0.91
CD44-232ENST00000531118 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.38□□□□□ -0.91
CD44-232ENST00000531118 KANSL1LA0AUZ9 987 aa9.38□□□□□ -0.91
CD44-232ENST00000531118 PIK3CDO00329 1044 aa9.38□□□□□ -0.91
CD44-232ENST00000531118 MEIS2O14770 477 aa9.38□□□□□ -0.91
CD44-232ENST00000531118 ZNF213O14771 459 aa9.38□□□□□ -0.91
CD44-232ENST00000531118 INPPL1O15357 1258 aa9.38□□□□□ -0.91
CD44-232ENST00000531118 C22orf31O95567 290 aa9.38□□□□□ -0.91
CD44-232ENST00000531118 VTNP04004 478 aa9.38□□□□□ -0.91
CD44-232ENST00000531118 STAT5BP51692 787 aa9.38□□□□□ -0.91
CD44-232ENST00000531118 ACTR2P61160 394 aa9.38□□□□□ -0.91
CD44-232ENST00000531118 SHC2P98077 582 aa9.38□□□□□ -0.91
CD44-232ENST00000531118 SPEM2Q0P670 501 aa9.38□□□□□ -0.91
CD44-232ENST00000531118 SEC23AQ15436 765 aa9.38□□□□□ -0.91
CD44-232ENST00000531118 BLOC1S3Q6QNY0 202 aa9.38□□□□□ -0.91
CD44-232ENST00000531118 GET4Q7L5D6 327 aaPredicted RBP9.38□□□□□ -0.91
CD44-232ENST00000531118 SHDQ96IW2 340 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms