RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 SLC9A9Q8IVB4 645 aa20.84■□□□□ 0.93
VPS28-213ENST00000530983 FMNL3Q8IVF7 1028 aa20.84■□□□□ 0.93
VPS28-213ENST00000530983 DAW1Q8N136 415 aa20.84■□□□□ 0.93
VPS28-213ENST00000530983 GPATCH11Q8N954 259 aa20.84■□□□□ 0.93
VPS28-213ENST00000530983 RDH13Q8NBN7 331 aa20.84■□□□□ 0.93
VPS28-213ENST00000530983 ACER1Q8TDN7 264 aa20.84■□□□□ 0.93
VPS28-213ENST00000530983 HOOK2Q96ED9 719 aa20.84■□□□□ 0.93
VPS28-213ENST00000530983 CNOT8Q9UFF9 292 aaKnown RBP20.84■□□□□ 0.93
VPS28-213ENST00000530983 SYNPO2Q9UMS6 1093 aa20.84■□□□□ 0.93
VPS28-213ENST00000530983 PPFIA2O75334 1257 aa20.84■□□□□ 0.93
VPS28-213ENST00000530983 TMOD1P28289 359 aa20.84■□□□□ 0.93
VPS28-213ENST00000530983 PPP2R2AP63151 447 aa20.84■□□□□ 0.93
VPS28-213ENST00000530983 DR1Q01658 176 aa20.84■□□□□ 0.93
VPS28-213ENST00000530983 ZNF211Q13398 564 aaPredicted RBP20.84■□□□□ 0.93
VPS28-213ENST00000530983 B3GNT9Q6UX72 402 aa20.84■□□□□ 0.93
VPS28-213ENST00000530983 CCDC91Q7Z6B0 441 aa20.84■□□□□ 0.93
VPS28-213ENST00000530983 ZNF622Q969S3 477 aaKnown RBP eCLIP20.84■□□□□ 0.932e-11■■■■■ 40.7
VPS28-213ENST00000530983 FMO2Q99518 471 aa20.84■□□□□ 0.93
VPS28-213ENST00000530983 LXNQ9BS40 222 aa20.84■□□□□ 0.93
VPS28-213ENST00000530983 ZNF577Q9BSK1 485 aa20.84■□□□□ 0.93
VPS28-213ENST00000530983 RAB17Q9H0T7 212 aa20.84■□□□□ 0.93
VPS28-213ENST00000530983 QTRT2Q9H974 415 aaKnown RBP20.84■□□□□ 0.93
VPS28-213ENST00000530983 NOVA2Q9UNW9 492 aaKnown RBP20.84■□□□□ 0.93
VPS28-213ENST00000530983 HIP1RO75146 1068 aa20.83■□□□□ 0.93
VPS28-213ENST00000530983 VIL1P09327 827 aaKnown RBP20.83■□□□□ 0.93
VPS28-213ENST00000530983 FNTAP49354 379 aa20.83■□□□□ 0.93
VPS28-213ENST00000530983 DLG4P78352 724 aa20.83■□□□□ 0.93
VPS28-213ENST00000530983 DUPD1Q68J44 220 aa20.83■□□□□ 0.93
VPS28-213ENST00000530983 TEX2Q8IWB9 1127 aa20.83■□□□□ 0.93
VPS28-213ENST00000530983 SLC20A1Q8WUM9 679 aa20.83■□□□□ 0.93
VPS28-213ENST00000530983 CYFIP2Q96F07 1278 aa20.83■□□□□ 0.93
VPS28-213ENST00000530983 ZDHHC18Q9NUE0 388 aa20.83■□□□□ 0.93
VPS28-213ENST00000530983 DAAM1Q9Y4D1 1078 aa20.83■□□□□ 0.93
VPS28-213ENST00000530983 TRAPPC3O43617 180 aa20.83■□□□□ 0.92
VPS28-213ENST00000530983 FSBPO95073 299 aa20.83■□□□□ 0.92
VPS28-213ENST00000530983 MNAT1P51948 309 aa20.83■□□□□ 0.92
VPS28-213ENST00000530983 GSCP56915 257 aaPredicted RBP20.83■□□□□ 0.92
VPS28-213ENST00000530983 COL23A1Q86Y22 540 aaPredicted RBP20.83■□□□□ 0.92
VPS28-213ENST00000530983 PRMT6Q96LA8 375 aaPredicted RBP20.83■□□□□ 0.92
VPS28-213ENST00000530983 NAP1L3Q99457 506 aaPredicted RBP20.83■□□□□ 0.92
VPS28-213ENST00000530983 AGPAT1Q99943 283 aa20.83■□□□□ 0.92
VPS28-213ENST00000530983 WDR11Q9BZH6 1224 aa20.83■□□□□ 0.92
VPS28-213ENST00000530983 GGA2Q9UJY4 613 aa20.83■□□□□ 0.92
VPS28-213ENST00000530983 BCS1LQ9Y276 419 aa20.83■□□□□ 0.92
VPS28-213ENST00000530983 ATP8A1Q9Y2Q0 1164 aa20.83■□□□□ 0.92
VPS28-213ENST00000530983 VCAM1P19320 739 aa20.82■□□□□ 0.92
VPS28-213ENST00000530983 RFX1P22670 979 aa20.82■□□□□ 0.92
VPS28-213ENST00000530983 TRAF1Q13077 416 aa20.82■□□□□ 0.92
VPS28-213ENST00000530983 ODF2Q5BJF6 829 aa20.82■□□□□ 0.92
VPS28-213ENST00000530983 SYCP3Q8IZU3 236 aa20.82■□□□□ 0.92
VPS28-213ENST00000530983 GLG1Q92896 1179 aa20.82■□□□□ 0.92
VPS28-213ENST00000530983 ERP44Q9BS26 406 aa20.82■□□□□ 0.92
VPS28-213ENST00000530983 TMOD4Q9NZQ9 345 aa20.82■□□□□ 0.92
VPS28-213ENST00000530983 CAPN7Q9Y6W3 813 aa20.82■□□□□ 0.92
VPS28-213ENST00000530983 COL2A1P02458 1487 aaPredicted RBP20.82■□□□□ 0.92
VPS28-213ENST00000530983 GMNCA6NCL1 334 aa20.82■□□□□ 0.92
VPS28-213ENST00000530983 HADHBP55084 474 aaKnown RBP20.82■□□□□ 0.92
VPS28-213ENST00000530983 MAGOHP61326 146 aaKnown RBP20.82■□□□□ 0.92
VPS28-213ENST00000530983 PPP2R5EQ16537 467 aa20.82■□□□□ 0.92
VPS28-213ENST00000530983 KRT71Q3SY84 523 aa20.82■□□□□ 0.92
VPS28-213ENST00000530983 C6orf89Q6UWU4 347 aa20.82■□□□□ 0.92
VPS28-213ENST00000530983 CNPY4Q8N129 248 aa20.82■□□□□ 0.92
VPS28-213ENST00000530983 MAGOHBQ96A72 148 aaKnown RBP20.82■□□□□ 0.92
VPS28-213ENST00000530983 RANBP17Q9H2T7 1088 aaKnown RBP20.82■□□□□ 0.92
VPS28-213ENST00000530983 TMX2Q9Y320 296 aa20.82■□□□□ 0.92
VPS28-213ENST00000530983 ALG6Q9Y672 507 aa20.82■□□□□ 0.92
VPS28-213ENST00000530983 GOLGA6L10A0A0M3HER8 536 aa20.81■□□□□ 0.92
VPS28-213ENST00000530983 ARHGEF35A5YM69 484 aa20.81■□□□□ 0.92
VPS28-213ENST00000530983 MMP10P09238 476 aa20.81■□□□□ 0.92
VPS28-213ENST00000530983 SPDYCQ5MJ68 293 aa20.81■□□□□ 0.92
VPS28-213ENST00000530983 AADACL2Q6P093 401 aa20.81■□□□□ 0.92
VPS28-213ENST00000530983 RHOT2Q8IXI1 618 aa20.81■□□□□ 0.92
VPS28-213ENST00000530983 PRPF38AQ8NAV1 312 aaKnown RBP20.81■□□□□ 0.92
VPS28-213ENST00000530983 EPB41L4BQ9H329 900 aa20.81■□□□□ 0.92
VPS28-213ENST00000530983 ARHGEF10LQ9HCE6 1279 aa20.81■□□□□ 0.92
VPS28-213ENST00000530983 EMSYQ7Z589 1322 aa20.81■□□□□ 0.92
VPS28-213ENST00000530983 TISP43B9A030 160 aa20.81■□□□□ 0.92
VPS28-213ENST00000530983 PAEPP09466 180 aa20.81■□□□□ 0.92
VPS28-213ENST00000530983 ARHGEF19Q8IW93 802 aa20.81■□□□□ 0.92
VPS28-213ENST00000530983 TEKT3Q9BXF9 490 aa20.81■□□□□ 0.92
VPS28-213ENST00000530983 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.81■□□□□ 0.92
VPS28-213ENST00000530983 UBE2TQ9NPD8 197 aaPredicted RBP20.81■□□□□ 0.92
VPS28-213ENST00000530983 K7ENM7 598 aa20.8■□□□□ 0.92
VPS28-213ENST00000530983 IPO5O00410 1097 aaKnown RBP20.8■□□□□ 0.92
VPS28-213ENST00000530983 BCRP11274 1271 aa20.8■□□□□ 0.92
VPS28-213ENST00000530983 SETQ01105 290 aaPredicted RBP20.8■□□□□ 0.92
VPS28-213ENST00000530983 PPP3CAQ08209 521 aa20.8■□□□□ 0.92
VPS28-213ENST00000530983 MYBPC2Q14324 1141 aa20.8■□□□□ 0.92
VPS28-213ENST00000530983 CC2D2BQ6DHV5 1058 aa20.8■□□□□ 0.92
VPS28-213ENST00000530983 JAMLQ86YT9 394 aa20.8■□□□□ 0.92
VPS28-213ENST00000530983 C3orf20Q8ND61 904 aa20.8■□□□□ 0.92
VPS28-213ENST00000530983 PCIF1Q9H4Z3 704 aa20.8■□□□□ 0.92
VPS28-213ENST00000530983 FAM187AA6NFU0 413 aa20.79■□□□□ 0.92
VPS28-213ENST00000530983 FTLP02792 175 aaPredicted RBP20.79■□□□□ 0.92
VPS28-213ENST00000530983 IFT88Q13099 833 aa20.79■□□□□ 0.92
VPS28-213ENST00000530983 DHX34Q14147 1143 aaKnown RBP20.79■□□□□ 0.92
VPS28-213ENST00000530983 C11orf63Q6NUN7 778 aa20.79■□□□□ 0.92
VPS28-213ENST00000530983 KRT35Q92764 455 aa20.79■□□□□ 0.92
VPS28-213ENST00000530983 TLCD1Q96CP7 247 aa20.79■□□□□ 0.92
VPS28-213ENST00000530983 PSMD1Q99460 953 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms