RNA–Protein interactions for RNA: ENST00000528768.5

USF1-208, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-208ENST00000528768 A0A0G2JMZ2 1700 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 NPHP3-ACAD11A0A0J9YXS1 232 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 ARHGEF35A5YM69 484 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 RNF225M0QZC1 329 aaPredicted RBP12.86□□□□□ -0.35
USF1-208ENST00000528768 AKR1B10O60218 316 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 FGBP02675 491 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 CSF2RAP15509 400 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 NR2F2P24468 414 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 CST5P28325 142 aaPredicted RBP12.86□□□□□ -0.35
USF1-208ENST00000528768 DSG3P32926 999 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 CDK7P50613 346 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 VAV2P52735 878 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 CYP4A11Q02928 519 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 CKAP4Q07065 602 aaKnown RBP12.86□□□□□ -0.35
USF1-208ENST00000528768 ALCAMQ13740 583 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 PLS1Q14651 629 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 KCTD2Q14681 263 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 BMS1Q14692 1282 aaKnown RBP12.86□□□□□ -0.35
USF1-208ENST00000528768 ERCC6LQ2NKX8 1250 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 SFMBT2Q5VUG0 894 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 IQCEQ6IPM2 695 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 TMCO3Q6UWJ1 677 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 MIER3Q7Z3K6 550 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 SFR1Q86XK3 245 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 FMNL3Q8IVF7 1028 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 TRIM59Q8IWR1 403 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 DYDC2Q96IM9 177 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 NECAB3Q96P71 396 aaPredicted RBP12.86□□□□□ -0.35
USF1-208ENST00000528768 SEZ6LQ9BYH1 1024 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 KCTD10Q9H3F6 313 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 SPC25Q9HBM1 224 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 FAM207AQ9NSI2 230 aaPredicted RBP12.86□□□□□ -0.35
USF1-208ENST00000528768 TBC1D22BQ9NU19 505 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 AGPAT5Q9NUQ2 364 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.86□□□□□ -0.35
USF1-208ENST00000528768 ARMCX3Q9UH62 379 aaPredicted RBP12.86□□□□□ -0.35
USF1-208ENST00000528768 GUCA1BQ9UMX6 200 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 PCDHB13Q9Y5F0 798 aa12.86□□□□□ -0.35
USF1-208ENST00000528768 V9GYY5 206 aaPredicted RBP12.86□□□□□ -0.35
USF1-208ENST00000528768 A0A0U1RQG5 324 aaPredicted RBP12.85□□□□□ -0.35
USF1-208ENST00000528768 SSU72P8A0A1W2PR75 194 aa12.85□□□□□ -0.35
USF1-208ENST00000528768 IPO5O00410 1097 aaKnown RBP12.85□□□□□ -0.35
USF1-208ENST00000528768 ATP8B1O43520 1251 aa12.85□□□□□ -0.35
USF1-208ENST00000528768 TACC1O75410 805 aa12.85□□□□□ -0.35
USF1-208ENST00000528768 FLOT1O75955 427 aa12.85□□□□□ -0.35
USF1-208ENST00000528768 GCNT3O95395 438 aa12.85□□□□□ -0.35
USF1-208ENST00000528768 ZNF865P0CJ78 1059 aaPredicted RBP12.85□□□□□ -0.35
USF1-208ENST00000528768 ARHGAP25P42331 645 aa12.85□□□□□ -0.35
USF1-208ENST00000528768 CHMP4BP1P59074 171 aa12.85□□□□□ -0.35
USF1-208ENST00000528768 CACNB1Q02641 598 aaPredicted RBP12.85□□□□□ -0.35
USF1-208ENST00000528768 CTTNQ14247 550 aaKnown RBP12.85□□□□□ -0.35
USF1-208ENST00000528768 SKIV2LQ15477 1246 aaKnown RBP12.85□□□□□ -0.35
USF1-208ENST00000528768 NFIL3Q16649 462 aa12.85□□□□□ -0.35
USF1-208ENST00000528768 PCNX4Q63HM2 1172 aa12.85□□□□□ -0.35
USF1-208ENST00000528768 RINT1Q6NUQ1 792 aa12.85□□□□□ -0.35
USF1-208ENST00000528768 PDXDC1Q6P996 788 aa12.85□□□□□ -0.35
USF1-208ENST00000528768 WDR59Q6PJI9 974 aa12.85□□□□□ -0.35
USF1-208ENST00000528768 RRAGAQ7L523 313 aa12.85□□□□□ -0.35
USF1-208ENST00000528768 EPM2AIP1Q7L775 607 aaPredicted RBP12.85□□□□□ -0.35
USF1-208ENST00000528768 HS2ST1Q7LGA3 356 aa12.85□□□□□ -0.35
USF1-208ENST00000528768 MYCT1Q8N699 235 aa12.85□□□□□ -0.35
USF1-208ENST00000528768 KLHDC9Q8NEP7 349 aa12.85□□□□□ -0.35
USF1-208ENST00000528768 EEF2KMTQ96G04 330 aa12.85□□□□□ -0.35
USF1-208ENST00000528768 RPGRIP1Q96KN7 1286 aa12.85□□□□□ -0.35
USF1-208ENST00000528768 CCDC43Q96MW1 224 aaKnown RBP12.85□□□□□ -0.35
USF1-208ENST00000528768 ALS2CR12Q96Q35 445 aa12.85□□□□□ -0.35
USF1-208ENST00000528768 UIMC1Q96RL1 719 aa12.85□□□□□ -0.35
USF1-208ENST00000528768 MMP19Q99542 508 aa12.85□□□□□ -0.35
USF1-208ENST00000528768 TIPINQ9BVW5 301 aa12.85□□□□□ -0.35
USF1-208ENST00000528768 LSM14BQ9BX40 385 aaKnown RBP12.85□□□□□ -0.35
USF1-208ENST00000528768 NKX2-4Q9H2Z4 354 aa12.85□□□□□ -0.35
USF1-208ENST00000528768 EPHX3Q9H6B9 360 aa12.85□□□□□ -0.35
USF1-208ENST00000528768 PARVGQ9HBI0 331 aa12.85□□□□□ -0.35
USF1-208ENST00000528768 PPP1R9AQ9ULJ8 1098 aa12.85□□□□□ -0.35
USF1-208ENST00000528768 DAAM1Q9Y4D1 1078 aa12.85□□□□□ -0.35
USF1-208ENST00000528768 PCDHA11Q9Y5I1 949 aa12.85□□□□□ -0.35
USF1-208ENST00000528768 SMCHD1A6NHR9 2005 aa12.84□□□□□ -0.35
USF1-208ENST00000528768 ANO9A1A5B4 782 aa12.84□□□□□ -0.35
USF1-208ENST00000528768 CTAGE15A4D2H0 777 aa12.84□□□□□ -0.35
USF1-208ENST00000528768 ARVCFO00192 962 aa12.84□□□□□ -0.35
USF1-208ENST00000528768 EML1O00423 815 aa12.84□□□□□ -0.35
USF1-208ENST00000528768 CHMP2AO43633 222 aa12.84□□□□□ -0.35
USF1-208ENST00000528768 DKC1O60832 514 aaKnown RBP eCLIP12.84□□□□□ -0.35
USF1-208ENST00000528768 DUSP11O75319 330 aaKnown RBP12.84□□□□□ -0.35
USF1-208ENST00000528768 SLITRK3O94933 977 aa12.84□□□□□ -0.35
USF1-208ENST00000528768 AFPP02771 609 aaKnown RBP12.84□□□□□ -0.35
USF1-208ENST00000528768 SERPING1P05155 500 aa12.84□□□□□ -0.35
USF1-208ENST00000528768 P4HBP07237 508 aaKnown RBP12.84□□□□□ -0.35
USF1-208ENST00000528768 CTAGE8P0CG41 777 aa12.84□□□□□ -0.35
USF1-208ENST00000528768 ALAS1P13196 640 aa12.84□□□□□ -0.35
USF1-208ENST00000528768 MCM3P25205 808 aa12.84□□□□□ -0.35
USF1-208ENST00000528768 KLK7P49862 253 aa12.84□□□□□ -0.35
USF1-208ENST00000528768 PSMC6P62333 389 aa12.84□□□□□ -0.35
USF1-208ENST00000528768 RAD51AP2Q09MP3 1159 aa12.84□□□□□ -0.35
USF1-208ENST00000528768 MAPK8IP2Q13387 824 aaPredicted RBP12.84□□□□□ -0.35
USF1-208ENST00000528768 KCNA10Q16322 511 aa12.84□□□□□ -0.35
USF1-208ENST00000528768 ZNF792Q3KQV3 632 aa12.84□□□□□ -0.35
USF1-208ENST00000528768 TEX35Q5T0J7 233 aa12.84□□□□□ -0.35
USF1-208ENST00000528768 PPP2R2DQ66LE6 453 aa12.84□□□□□ -0.35
USF1-208ENST00000528768 CCSAPQ6IQ19 270 aaPredicted RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms